Wall clock time and date at job start Tue Mar 31 2020 20:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47212 * 2 1 4 4 N 1.46501 * 109.47389 * 120.00567 * 2 1 3 5 5 S 1.65607 * 119.99902 * 262.87596 * 4 2 1 6 6 O 1.42101 * 106.39759 * 311.97863 * 5 4 2 7 7 O 1.42092 * 106.40482 * 179.05755 * 5 4 2 8 8 C 1.76202 * 107.21674 * 65.51598 * 5 4 2 9 9 C 1.37641 * 120.12849 * 244.10378 * 8 5 4 10 10 C 1.38615 * 120.24494 * 179.97438 * 9 8 5 11 11 C 1.38660 * 120.50381 * 0.02562 * 10 9 8 12 12 C 1.37591 * 120.24620 * 359.97438 * 11 10 9 13 13 C 1.40697 * 120.12541 * 64.35942 * 8 5 4 14 14 C 1.41400 * 120.24704 * 0.02562 * 13 8 5 15 15 H 1.07996 * 119.99776 * 330.56210 * 14 13 8 16 16 C 1.39945 * 119.99872 * 150.55411 * 14 13 8 17 17 N 1.30824 * 119.99848 * 344.48760 * 16 14 13 18 18 Si 1.86798 * 119.99974 * 164.48503 * 16 14 13 19 19 H 1.48510 * 109.46717 * 89.99963 * 18 16 14 20 20 H 1.48494 * 109.47313 * 210.00087 * 18 16 14 21 21 H 1.48497 * 109.47003 * 330.00440 * 18 16 14 22 22 C 1.52999 * 109.47108 * 240.00257 * 2 1 3 23 23 H 1.09000 * 109.50979 * 185.07756 * 22 2 1 24 24 C 1.53124 * 109.50202 * 64.99674 * 22 2 1 25 25 C 1.53117 * 109.16086 * 182.40359 * 24 22 2 26 26 C 1.53037 * 109.27932 * 57.65551 * 25 24 22 27 27 N 1.46846 * 109.52464 * 300.82409 * 26 25 24 28 28 C 1.46847 * 111.20018 * 61.73874 * 27 26 25 29 29 H 1.08996 * 109.46628 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46870 * 299.99352 * 1 2 3 31 31 H 1.08993 * 109.46910 * 59.99823 * 1 2 3 32 32 H 0.96996 * 120.00332 * 82.87415 * 4 2 1 33 33 H 1.07998 * 119.87290 * 359.97438 * 9 8 5 34 34 H 1.07997 * 119.74738 * 180.02562 * 10 9 8 35 35 H 1.08003 * 119.87344 * 180.02562 * 11 10 9 36 36 H 1.07999 * 120.12447 * 179.97438 * 12 11 10 37 37 H 0.97006 * 119.99340 * 180.02562 * 17 16 14 38 38 H 1.08991 * 109.52387 * 302.30961 * 24 22 2 39 39 H 1.09003 * 109.51820 * 62.50764 * 24 22 2 40 40 H 1.08996 * 109.50540 * 177.59653 * 25 24 22 41 41 H 1.08999 * 109.50642 * 297.68028 * 25 24 22 42 42 H 1.09006 * 109.46223 * 60.83392 * 26 25 24 43 43 H 1.09000 * 109.46710 * 180.81102 * 26 25 24 44 44 H 1.00906 * 110.99756 * 297.63899 * 27 26 25 45 45 H 1.08999 * 109.46248 * 178.24637 * 28 27 26 46 46 H 1.08997 * 109.46226 * 58.27575 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 16 2.4622 0.1810 2.5324 6 8 3.3077 1.2244 2.0682 7 8 2.8625 -0.7652 3.5140 8 6 1.0083 0.9583 3.1545 9 6 0.9079 2.3310 3.1613 10 6 -0.2349 2.9450 3.6496 11 6 -1.2883 2.1861 4.1365 12 6 -1.2097 0.8125 4.1394 13 6 -0.0521 0.1783 3.6510 14 6 0.0423 -1.2326 3.6546 15 1 0.6340 -1.7360 2.9044 16 6 -0.6310 -1.9765 4.6302 17 7 -1.0901 -1.3847 5.7028 18 14 -0.8742 -3.8143 4.4008 19 1 0.2759 -4.5435 4.9935 20 1 -2.1282 -4.2357 5.0753 21 1 -0.9632 -4.1247 2.9514 22 6 2.0400 -0.7212 -1.2493 23 1 3.1262 -0.8010 -1.2056 24 6 1.6352 0.0691 -2.4968 25 6 2.0968 -0.6897 -3.7441 26 6 1.4817 -2.0909 -3.7396 27 7 1.8991 -2.8064 -2.5271 28 6 1.4264 -2.1215 -1.3172 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 2.0819 -1.6586 1.2053 33 1 1.7225 2.9318 2.7848 34 1 -0.3053 4.0227 3.6507 35 1 -2.1741 2.6752 4.5142 36 1 -2.0311 0.2233 4.5195 37 1 -1.5565 -1.9005 6.3792 38 1 0.5515 0.1830 -2.5201 39 1 2.1056 1.0521 -2.4737 40 1 1.7742 -0.1534 -4.6365 41 1 3.1839 -0.7690 -3.7403 42 1 0.3947 -2.0105 -3.7577 43 1 1.8198 -2.6389 -4.6191 44 1 2.9006 -2.9281 -2.5058 45 1 1.7244 -2.6916 -0.4372 46 1 0.3398 -2.0409 -1.3466 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601337538.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:55 Heat of formation + Delta-G solvation = -93.959163 kcal Electronic energy + Delta-G solvation = -28942.121091 eV Core-core repulsion = 25149.315712 eV Total energy + Delta-G solvation = -3792.805379 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.40755 -39.36542 -38.04174 -36.83251 -36.66358 -35.63688 -32.80130 -32.04233 -31.72181 -31.34594 -29.35518 -27.31223 -25.06111 -24.60220 -23.39840 -22.94571 -22.23639 -20.51095 -20.26492 -19.47675 -18.54525 -17.90016 -17.16452 -17.01989 -16.66171 -16.08132 -16.00668 -15.87905 -15.59943 -15.10910 -14.97961 -14.86578 -14.44426 -14.26918 -13.95108 -13.67913 -13.54190 -13.30239 -13.17155 -13.01376 -12.97273 -12.86561 -12.80620 -12.76880 -12.51828 -12.47682 -12.17742 -12.13550 -11.99893 -11.86666 -11.62262 -11.50455 -11.19877 -11.14790 -11.11647 -10.22929 -9.79382 -9.41065 -9.19969 -8.80391 -6.57255 -0.14666 0.56097 0.99160 1.37959 1.48420 1.53832 2.16581 2.35133 2.64679 3.01151 3.38793 3.48735 3.76759 3.84004 3.90087 3.94717 4.17734 4.26938 4.34189 4.38287 4.47337 4.50722 4.52669 4.60156 4.68158 4.73192 4.79808 4.99837 5.01904 5.02900 5.07968 5.12813 5.15037 5.18413 5.21887 5.31115 5.40769 5.44693 5.54095 5.59059 5.72909 5.82468 6.01930 6.10914 6.13863 6.25164 6.49242 6.54097 6.70424 6.85563 8.18015 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011180 B = 0.004992 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.940181 B = 5607.704661 C = 6711.953026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.160 3.840 3 H 0.079 0.921 4 N -1.104 6.104 5 S 2.716 3.284 6 O -1.012 7.012 7 O -1.002 7.002 8 C -0.786 4.786 9 C -0.015 4.015 10 C -0.251 4.251 11 C -0.074 4.074 12 C -0.184 4.184 13 C 0.174 3.826 14 C -0.474 4.474 15 H 0.094 0.906 16 C 0.042 3.958 17 N -0.807 5.807 18 Si 0.969 3.031 19 H -0.268 1.268 20 H -0.262 1.262 21 H -0.241 1.241 22 C -0.117 4.117 23 H 0.074 0.926 24 C -0.117 4.117 25 C -0.150 4.150 26 C 0.055 3.945 27 N -0.692 5.692 28 C 0.059 3.941 29 H 0.068 0.932 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.418 0.582 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.294 0.706 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.085 0.915 44 H 0.344 0.656 45 H 0.069 0.931 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.460 -1.538 -15.736 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.052 3.948 3 H 0.097 0.903 4 N -0.864 5.864 5 S 2.813 3.187 6 O -1.002 7.002 7 O -0.993 6.993 8 C -0.880 4.880 9 C -0.035 4.035 10 C -0.271 4.271 11 C -0.093 4.093 12 C -0.204 4.204 13 C 0.169 3.831 14 C -0.502 4.502 15 H 0.112 0.888 16 C -0.176 4.176 17 N -0.431 5.431 18 Si 0.789 3.211 19 H -0.193 1.193 20 H -0.186 1.186 21 H -0.164 1.164 22 C -0.139 4.139 23 H 0.092 0.908 24 C -0.155 4.155 25 C -0.189 4.189 26 C -0.074 4.074 27 N -0.320 5.320 28 C -0.071 4.071 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.101 0.899 32 H 0.254 0.746 33 H 0.137 0.863 34 H 0.143 0.857 35 H 0.138 0.862 36 H 0.125 0.875 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.103 0.897 44 H 0.162 0.838 45 H 0.088 0.912 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.679 -1.800 -15.202 15.324 hybrid contribution -0.241 0.145 0.825 0.872 sum 0.437 -1.655 -14.377 14.478 Atomic orbital electron populations 1.22384 0.94975 1.03176 1.02418 1.20766 0.94433 0.95767 0.83784 0.90313 1.55409 1.83759 1.19097 1.28126 1.00406 0.73719 0.72347 0.72220 1.93418 1.66019 1.58836 1.81956 1.93488 1.82920 1.63036 1.59817 1.30087 1.21031 1.03929 1.32942 1.20541 0.96840 0.92522 0.93585 1.20840 0.96044 0.99126 1.11059 1.21202 0.98001 0.94017 0.96093 1.21428 0.98714 0.94124 1.06152 1.17183 0.88608 0.92645 0.84660 1.20085 1.26375 0.91518 1.12222 0.88764 1.26757 0.91732 1.06095 0.93038 1.69841 1.26143 1.41009 1.06096 0.85380 0.78862 0.75799 0.81103 1.19272 1.18599 1.16397 1.22056 1.00749 0.97434 0.93679 0.90803 1.21681 1.02079 0.98636 0.93107 1.22202 1.00878 0.97716 0.98080 1.22082 1.00550 0.92089 0.92689 1.60698 1.19110 1.50112 1.02041 1.22140 1.00670 0.91308 0.92984 0.91286 0.93716 0.89912 0.74593 0.86331 0.85732 0.86197 0.87540 0.89470 0.90735 0.91623 0.90110 0.91943 0.91170 0.89707 0.83827 0.91223 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.78 8.78 71.98 0.63 -4.15 16 2 C 0.16 4.50 2.70 44.99 0.12 4.62 16 3 H 0.08 2.36 7.48 -2.39 -0.02 2.34 16 4 N -1.10 -36.95 4.53 -169.38 -0.77 -37.72 16 5 S 2.72 118.13 4.94 -56.49 -0.28 117.85 16 6 O -1.01 -45.59 16.29 -128.00 -2.09 -47.67 16 7 O -1.00 -50.66 16.64 -128.00 -2.13 -52.79 16 8 C -0.79 -36.90 5.07 22.73 0.12 -36.79 16 9 C -0.02 -0.67 9.54 22.22 0.21 -0.46 16 10 C -0.25 -10.42 10.05 22.46 0.23 -10.19 16 11 C -0.07 -3.22 10.02 22.22 0.22 -3.00 16 12 C -0.18 -9.01 8.66 22.73 0.20 -8.81 16 13 C 0.17 8.69 5.18 -21.29 -0.11 8.58 16 14 C -0.47 -23.43 7.61 23.46 0.18 -23.25 16 15 H 0.09 4.32 5.76 -2.91 -0.02 4.31 16 16 C 0.04 2.02 5.15 85.26 0.44 2.46 16 17 N -0.81 -40.19 11.18 21.83 0.24 -39.94 16 18 Si 0.97 36.12 29.59 68.60 2.03 38.15 16 19 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 20 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 21 H -0.24 -8.36 7.11 99.48 0.71 -7.65 16 22 C -0.12 -2.54 2.31 -10.74 -0.02 -2.57 16 23 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 24 C -0.12 -2.09 5.09 30.67 0.16 -1.93 16 25 C -0.15 -2.14 6.08 30.65 0.19 -1.96 16 26 C 0.06 0.84 6.55 86.33 0.57 1.40 16 27 N -0.69 -12.76 6.87 -514.00 -3.53 -16.29 16 28 C 0.06 1.25 5.23 86.33 0.45 1.70 16 29 H 0.07 1.86 6.32 -2.39 -0.02 1.84 16 30 H 0.04 1.54 6.88 -2.39 -0.02 1.52 16 31 H 0.08 1.87 6.52 -2.39 -0.02 1.85 16 32 H 0.42 12.62 7.06 -96.75 -0.68 11.93 16 33 H 0.12 4.84 7.33 -2.91 -0.02 4.82 16 34 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 35 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 36 H 0.11 5.34 6.48 -2.91 -0.02 5.32 16 37 H 0.29 13.19 8.30 -92.70 -0.77 12.42 16 38 H 0.07 1.29 6.47 -2.39 -0.02 1.27 16 39 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.34 5.70 8.86 -89.69 -0.79 4.90 16 45 H 0.07 1.57 6.78 -2.39 -0.02 1.55 16 46 H 0.08 1.74 6.29 -2.39 -0.02 1.72 16 Total: -1.00 -63.63 364.86 -3.41 -67.03 By element: Atomic # 1 Polarization: 46.18 SS G_CDS: -0.46 Total: 45.72 kcal Atomic # 6 Polarization: -77.92 SS G_CDS: 3.57 Total: -74.35 kcal Atomic # 7 Polarization: -89.90 SS G_CDS: -4.05 Total: -93.95 kcal Atomic # 8 Polarization: -96.25 SS G_CDS: -4.22 Total: -100.46 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Atomic # 16 Polarization: 118.13 SS G_CDS: -0.28 Total: 117.85 kcal Total: -63.63 -3.41 -67.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337538.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.926 kcal (2) G-P(sol) polarization free energy of solvation -63.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds