Wall clock time and date at job start Tue Mar 31 2020 20:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.46793 * 2 1 4 4 N 1.46896 * 109.47200 * 239.99480 * 2 1 3 5 5 C 1.53006 * 109.46798 * 119.99153 * 2 1 3 6 6 H 1.08994 * 109.49254 * 59.94303 * 5 2 1 7 7 C 1.53035 * 109.50141 * 299.84020 * 5 2 1 8 8 C 1.53037 * 109.54116 * 178.68621 * 7 5 2 9 9 C 1.52761 * 109.38380 * 61.23840 * 8 7 5 10 10 N 1.46934 * 109.00688 * 305.59151 * 9 8 7 11 11 S 1.65602 * 120.62860 * 233.58344 * 10 9 8 12 12 O 1.42095 * 106.40152 * 163.91270 * 11 10 9 13 13 O 1.42102 * 106.40305 * 30.98824 * 11 10 9 14 14 C 1.76207 * 107.21687 * 277.44908 * 11 10 9 15 15 C 1.37640 * 120.12292 * 114.81434 * 14 11 10 16 16 C 1.38618 * 120.24430 * 179.97438 * 15 14 11 17 17 C 1.38655 * 120.50185 * 0.02562 * 16 15 14 18 18 C 1.37597 * 120.24677 * 0.02562 * 17 16 15 19 19 C 1.40692 * 120.12626 * 294.79671 * 14 11 10 20 20 C 1.41393 * 120.24931 * 359.97438 * 19 14 11 21 21 H 1.08003 * 119.99537 * 328.41316 * 20 19 14 22 22 C 1.39944 * 120.00123 * 148.40719 * 20 19 14 23 23 N 1.30823 * 119.99595 * 164.87165 * 22 20 19 24 24 Si 1.86791 * 120.00134 * 344.87484 * 22 20 19 25 25 H 1.48497 * 109.47469 * 94.31439 * 24 22 20 26 26 H 1.48501 * 109.47353 * 214.31463 * 24 22 20 27 27 H 1.48500 * 109.47033 * 334.31333 * 24 22 20 28 28 C 1.46918 * 118.73658 * 53.30925 * 10 9 8 29 29 H 1.08996 * 109.47533 * 300.00499 * 1 2 3 30 30 H 1.08994 * 109.46756 * 60.00602 * 1 2 3 31 31 H 1.08997 * 109.46462 * 180.02562 * 1 2 3 32 32 H 1.00896 * 110.99860 * 299.99526 * 4 2 1 33 33 H 1.00897 * 110.99799 * 63.95878 * 4 2 1 34 34 H 1.09002 * 109.46261 * 298.70562 * 7 5 2 35 35 H 1.09008 * 109.45854 * 58.67538 * 7 5 2 36 36 H 1.08996 * 109.50420 * 181.32023 * 8 7 5 37 37 H 1.09008 * 109.49215 * 301.41529 * 8 7 5 38 38 H 1.09002 * 109.51033 * 185.71102 * 9 8 7 39 39 H 1.08994 * 109.43148 * 65.42513 * 9 8 7 40 40 H 1.07999 * 119.88115 * 359.97438 * 15 14 11 41 41 H 1.08002 * 119.74898 * 180.02562 * 16 15 14 42 42 H 1.08001 * 119.87588 * 180.27405 * 17 16 15 43 43 H 1.08001 * 120.12638 * 179.97438 * 18 17 16 44 44 H 0.97009 * 119.99867 * 180.02562 * 23 22 20 45 45 H 1.08999 * 109.58906 * 66.43043 * 28 10 9 46 46 H 1.09002 * 109.58670 * 186.85146 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0400 -0.7211 1.2494 6 1 1.6760 -1.7485 1.2504 7 6 1.5335 0.0023 2.4993 8 6 2.0158 -0.7370 3.7494 9 6 3.5432 -0.7412 3.7783 10 7 4.0442 -1.3002 2.5152 11 16 5.1155 -2.5630 2.5175 12 8 5.1044 -3.1010 1.2024 13 8 4.8245 -3.3340 3.6752 14 6 6.7224 -1.8832 2.7634 15 6 7.4286 -2.1761 3.9080 16 6 8.6931 -1.6431 4.1038 17 6 9.2609 -0.8101 3.1518 18 6 8.5727 -0.5030 2.0006 19 6 7.2887 -1.0395 1.7904 20 6 6.5730 -0.7324 0.6102 21 1 5.8920 -1.4565 0.1879 22 6 6.7470 0.5097 -0.0105 23 7 6.3306 0.6919 -1.2372 24 14 7.5738 1.9074 0.9125 25 1 9.0232 1.9248 0.5898 26 1 6.9613 3.1984 0.5083 27 1 7.3943 1.7104 2.3734 28 6 3.5719 -0.7214 1.2501 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.6963 -1.6480 -1.2225 33 1 1.7504 -0.1991 -2.0371 34 1 1.9181 1.0221 2.5096 35 1 0.4437 0.0253 2.4890 36 1 1.6353 -0.2348 4.6387 37 1 1.6520 -1.7644 3.7275 38 1 3.8898 -1.3527 4.6114 39 1 3.9064 0.2797 3.8956 40 1 6.9958 -2.8234 4.6564 41 1 9.2403 -1.8785 5.0047 42 1 10.2486 -0.4040 3.3127 43 1 9.0167 0.1464 1.2605 44 1 6.4515 1.5528 -1.6676 45 1 3.9375 0.3012 1.1570 46 1 3.9376 -1.3197 0.4155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601337913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:59 Heat of formation + Delta-G solvation = -65.822244 kcal Electronic energy + Delta-G solvation = -29563.182026 eV Core-core repulsion = 25771.596756 eV Total energy + Delta-G solvation = -3791.585270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -38.76560 -37.80493 -36.34218 -35.51211 -34.84425 -33.79382 -31.84700 -30.64270 -30.17917 -30.04076 -28.29101 -25.35713 -24.19170 -23.17187 -21.99135 -21.11808 -20.87317 -19.75622 -18.00585 -17.64302 -17.10516 -16.37444 -15.78060 -15.32685 -15.19233 -14.60756 -14.29340 -14.20485 -14.14022 -13.68597 -13.56376 -13.45277 -13.20035 -12.96765 -12.81677 -12.57770 -12.55548 -12.21579 -11.85377 -11.57296 -11.42952 -11.26468 -11.18724 -11.11246 -11.01167 -10.93836 -10.72939 -10.65814 -10.47891 -10.36265 -10.12010 -9.95579 -9.86253 -9.40534 -9.22901 -8.40059 -8.28271 -8.11830 -7.76637 -7.10897 -4.79406 1.50787 2.13570 2.57736 2.97826 3.06158 3.17667 3.80972 3.88008 4.30736 4.65315 4.72279 4.86816 5.08767 5.12527 5.20606 5.25189 5.31028 5.41702 5.49307 5.63886 5.73915 5.80909 5.85343 5.86893 5.95528 5.95819 5.99491 6.06797 6.11466 6.21184 6.24012 6.37268 6.42411 6.46184 6.54768 6.69946 6.82411 6.98578 7.02761 7.14613 7.24465 7.40223 7.43889 7.50072 7.61801 7.73387 7.90046 8.24925 8.39105 8.60931 9.85530 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011516 B = 0.006334 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.786549 B = 4419.219596 C = 5720.207671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.095 3.905 3 H 0.080 0.920 4 N -0.833 5.833 5 C -0.095 4.095 6 H 0.067 0.933 7 C -0.113 4.113 8 C -0.129 4.129 9 C 0.123 3.877 10 N -0.994 5.994 11 S 2.704 3.296 12 O -0.965 6.965 13 O -0.998 6.998 14 C -0.772 4.772 15 C 0.016 3.984 16 C -0.262 4.262 17 C -0.046 4.046 18 C -0.235 4.235 19 C 0.163 3.837 20 C -0.453 4.453 21 H 0.133 0.867 22 C 0.093 3.907 23 N -0.765 5.765 24 Si 0.901 3.099 25 H -0.268 1.268 26 H -0.287 1.287 27 H -0.241 1.241 28 C 0.144 3.856 29 H 0.061 0.939 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.338 0.662 33 H 0.338 0.662 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.289 0.711 45 H 0.065 0.935 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.303 3.412 3.688 10.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.018 4.018 3 H 0.098 0.902 4 N -0.362 5.362 5 C -0.115 4.115 6 H 0.086 0.914 7 C -0.151 4.151 8 C -0.168 4.168 9 C -0.004 4.004 10 N -0.830 5.830 11 S 2.803 3.197 12 O -0.955 6.955 13 O -0.989 6.989 14 C -0.866 4.866 15 C -0.004 4.004 16 C -0.282 4.282 17 C -0.064 4.064 18 C -0.254 4.254 19 C 0.158 3.842 20 C -0.480 4.480 21 H 0.150 0.850 22 C -0.132 4.132 23 N -0.386 5.386 24 Si 0.727 3.273 25 H -0.194 1.194 26 H -0.214 1.214 27 H -0.164 1.164 28 C 0.019 3.981 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.130 0.870 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.123 0.877 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.886 2.784 3.578 9.975 hybrid contribution 0.050 1.312 0.122 1.319 sum -8.836 4.096 3.701 10.418 Atomic orbital electron populations 1.22717 0.98411 1.01717 1.01832 1.21398 0.91186 0.98591 0.90577 0.90163 1.58723 1.67534 1.06099 1.03825 1.21568 0.97499 0.99306 0.93160 0.91410 1.21583 0.99790 0.99428 0.94275 1.21776 0.96129 1.01081 0.97815 1.21180 0.93874 0.99455 0.85844 1.57613 1.59914 1.54147 1.11315 1.01013 0.73546 0.72532 0.72631 1.93498 1.87212 1.76561 1.38277 1.93431 1.85285 1.68176 1.51969 1.29978 1.23298 1.27983 1.05306 1.20385 0.93568 0.93034 0.93397 1.20477 0.98186 1.08239 1.01298 1.20820 0.97345 0.94908 0.93376 1.21217 0.96714 1.08169 0.99296 1.17087 0.90411 0.86956 0.89741 1.20430 1.22056 1.01534 1.03971 0.84958 1.26153 0.92780 1.00314 0.93913 1.69695 1.32666 1.25720 1.10504 0.86486 0.79318 0.78668 0.82847 1.19440 1.21417 1.16450 1.21425 0.91170 1.00515 0.84982 0.91968 0.93108 0.92871 0.84949 0.84933 0.91805 0.92130 0.91300 0.91686 0.89812 0.91937 0.87041 0.88246 0.88431 0.87736 0.90010 0.91703 0.86663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.89 9.13 37.16 0.34 -1.55 16 2 C 0.09 1.22 2.94 -67.71 -0.20 1.02 16 3 H 0.08 1.09 8.14 -51.92 -0.42 0.66 16 4 N -0.83 -11.39 8.58 -4.66 -0.04 -11.43 16 5 C -0.09 -1.37 2.08 -90.50 -0.19 -1.56 16 6 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 7 C -0.11 -1.38 4.86 -26.69 -0.13 -1.51 16 8 C -0.13 -1.64 6.06 -26.83 -0.16 -1.81 16 9 C 0.12 1.92 6.42 -3.93 -0.03 1.89 16 10 N -0.99 -18.78 3.26 -113.77 -0.37 -19.15 16 11 S 2.70 60.15 5.09 -107.50 -0.55 59.60 16 12 O -0.96 -24.02 14.26 -57.17 -0.82 -24.83 16 13 O -1.00 -22.61 15.79 -57.17 -0.90 -23.51 16 14 C -0.77 -18.22 5.96 -38.87 -0.23 -18.45 16 15 C 0.02 0.35 9.54 -39.66 -0.38 -0.03 16 16 C -0.26 -5.46 10.05 -39.29 -0.39 -5.85 16 17 C -0.05 -0.97 10.02 -39.66 -0.40 -1.37 16 18 C -0.23 -5.52 7.09 -38.87 -0.28 -5.80 16 19 C 0.16 4.05 5.09 -106.83 -0.54 3.51 16 20 C -0.45 -11.50 7.32 -37.74 -0.28 -11.77 16 21 H 0.13 3.60 4.34 -52.48 -0.23 3.37 16 22 C 0.09 2.23 5.44 -17.34 -0.09 2.14 16 23 N -0.77 -18.47 13.93 55.55 0.77 -17.70 16 24 Si 0.90 19.29 24.48 -169.99 -4.16 15.13 16 25 H -0.27 -5.64 6.71 56.52 0.38 -5.26 16 26 H -0.29 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.24 -5.33 6.78 56.52 0.38 -4.95 16 28 C 0.14 2.66 3.99 -3.72 -0.01 2.65 16 29 H 0.06 0.59 6.41 -51.93 -0.33 0.25 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.34 4.31 9.00 -39.29 -0.35 3.95 16 33 H 0.34 4.00 9.07 -39.29 -0.36 3.64 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.63 6.37 -51.92 -0.33 0.30 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 38 H 0.08 1.30 7.11 -51.93 -0.37 0.94 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.11 2.25 7.32 -52.49 -0.38 1.86 16 41 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 42 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.10 2.40 4.72 -52.49 -0.25 2.15 16 44 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.12 2.48 5.22 -51.93 -0.27 2.21 16 LS Contribution 359.22 15.07 5.41 5.41 Total: -1.00 -29.20 359.22 -10.32 -39.53 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -6.70 Total: 15.45 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: -2.97 Total: -38.49 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.36 Total: -48.28 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -1.72 Total: -48.35 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.16 Total: 15.13 kcal Atomic # 16 Polarization: 60.15 SS G_CDS: -0.55 Total: 59.60 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.20 -10.32 -39.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.296 kcal (2) G-P(sol) polarization free energy of solvation -29.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds