Wall clock time and date at job start Tue Mar 31 2020 20:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09007 * 109.46793 * 2 1 4 4 N 1.46896 * 109.47200 * 239.99480 * 2 1 3 5 5 C 1.53006 * 109.46798 * 119.99153 * 2 1 3 6 6 H 1.08994 * 109.49254 * 59.94303 * 5 2 1 7 7 C 1.53035 * 109.50141 * 299.84020 * 5 2 1 8 8 C 1.53037 * 109.54116 * 178.68621 * 7 5 2 9 9 C 1.52761 * 109.38380 * 61.23840 * 8 7 5 10 10 N 1.46934 * 109.00688 * 305.59151 * 9 8 7 11 11 S 1.65602 * 120.62860 * 233.58344 * 10 9 8 12 12 O 1.42095 * 106.40152 * 163.91270 * 11 10 9 13 13 O 1.42102 * 106.40305 * 30.98824 * 11 10 9 14 14 C 1.76207 * 107.21687 * 277.44908 * 11 10 9 15 15 C 1.37640 * 120.12292 * 114.81434 * 14 11 10 16 16 C 1.38618 * 120.24430 * 179.97438 * 15 14 11 17 17 C 1.38655 * 120.50185 * 0.02562 * 16 15 14 18 18 C 1.37597 * 120.24677 * 0.02562 * 17 16 15 19 19 C 1.40692 * 120.12626 * 294.79671 * 14 11 10 20 20 C 1.41393 * 120.24931 * 359.97438 * 19 14 11 21 21 H 1.08003 * 119.99537 * 328.41316 * 20 19 14 22 22 C 1.39944 * 120.00123 * 148.40719 * 20 19 14 23 23 N 1.30823 * 119.99595 * 164.87165 * 22 20 19 24 24 Si 1.86791 * 120.00134 * 344.87484 * 22 20 19 25 25 H 1.48497 * 109.47469 * 94.31439 * 24 22 20 26 26 H 1.48501 * 109.47353 * 214.31463 * 24 22 20 27 27 H 1.48500 * 109.47033 * 334.31333 * 24 22 20 28 28 C 1.46918 * 118.73658 * 53.30925 * 10 9 8 29 29 H 1.08996 * 109.47533 * 300.00499 * 1 2 3 30 30 H 1.08994 * 109.46756 * 60.00602 * 1 2 3 31 31 H 1.08997 * 109.46462 * 180.02562 * 1 2 3 32 32 H 1.00896 * 110.99860 * 299.99526 * 4 2 1 33 33 H 1.00897 * 110.99799 * 63.95878 * 4 2 1 34 34 H 1.09002 * 109.46261 * 298.70562 * 7 5 2 35 35 H 1.09008 * 109.45854 * 58.67538 * 7 5 2 36 36 H 1.08996 * 109.50420 * 181.32023 * 8 7 5 37 37 H 1.09008 * 109.49215 * 301.41529 * 8 7 5 38 38 H 1.09002 * 109.51033 * 185.71102 * 9 8 7 39 39 H 1.08994 * 109.43148 * 65.42513 * 9 8 7 40 40 H 1.07999 * 119.88115 * 359.97438 * 15 14 11 41 41 H 1.08002 * 119.74898 * 180.02562 * 16 15 14 42 42 H 1.08001 * 119.87588 * 180.27405 * 17 16 15 43 43 H 1.08001 * 120.12638 * 179.97438 * 18 17 16 44 44 H 0.97009 * 119.99867 * 180.02562 * 23 22 20 45 45 H 1.08999 * 109.58906 * 66.43043 * 28 10 9 46 46 H 1.09002 * 109.58670 * 186.85146 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0400 -0.7211 1.2494 6 1 1.6760 -1.7485 1.2504 7 6 1.5335 0.0023 2.4993 8 6 2.0158 -0.7370 3.7494 9 6 3.5432 -0.7412 3.7783 10 7 4.0442 -1.3002 2.5152 11 16 5.1155 -2.5630 2.5175 12 8 5.1044 -3.1010 1.2024 13 8 4.8245 -3.3340 3.6752 14 6 6.7224 -1.8832 2.7634 15 6 7.4286 -2.1761 3.9080 16 6 8.6931 -1.6431 4.1038 17 6 9.2609 -0.8101 3.1518 18 6 8.5727 -0.5030 2.0006 19 6 7.2887 -1.0395 1.7904 20 6 6.5730 -0.7324 0.6102 21 1 5.8920 -1.4565 0.1879 22 6 6.7470 0.5097 -0.0105 23 7 6.3306 0.6919 -1.2372 24 14 7.5738 1.9074 0.9125 25 1 9.0232 1.9248 0.5898 26 1 6.9613 3.1984 0.5083 27 1 7.3943 1.7104 2.3734 28 6 3.5719 -0.7214 1.2501 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.6963 -1.6480 -1.2225 33 1 1.7504 -0.1991 -2.0371 34 1 1.9181 1.0221 2.5096 35 1 0.4437 0.0253 2.4890 36 1 1.6353 -0.2348 4.6387 37 1 1.6520 -1.7644 3.7275 38 1 3.8898 -1.3527 4.6114 39 1 3.9064 0.2797 3.8956 40 1 6.9958 -2.8234 4.6564 41 1 9.2403 -1.8785 5.0047 42 1 10.2486 -0.4040 3.3127 43 1 9.0167 0.1464 1.2605 44 1 6.4515 1.5528 -1.6676 45 1 3.9375 0.3012 1.1570 46 1 3.9376 -1.3197 0.4155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601337913.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:58 Heat of formation + Delta-G solvation = -86.726678 kcal Electronic energy + Delta-G solvation = -29564.088510 eV Core-core repulsion = 25771.596756 eV Total energy + Delta-G solvation = -3792.491755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.97308 -39.55744 -38.15667 -36.71834 -36.65344 -35.59060 -33.10322 -32.41068 -31.79216 -31.39718 -29.26601 -27.15800 -25.42084 -24.41189 -23.72427 -22.89728 -22.02526 -20.91340 -19.68964 -19.43214 -18.69399 -18.06452 -17.18506 -16.91275 -16.74940 -15.90292 -15.78716 -15.67913 -15.36436 -15.32475 -15.20027 -14.71147 -14.58114 -14.47295 -13.99532 -13.98850 -13.80638 -13.61755 -13.50846 -13.15610 -13.03315 -12.95999 -12.72013 -12.68866 -12.46412 -12.41612 -12.24853 -12.09316 -11.82665 -11.69760 -11.63115 -11.25878 -11.20838 -11.15794 -10.98289 -9.97903 -9.71251 -9.55226 -9.35063 -8.91395 -6.65990 -0.20626 0.36525 0.80381 1.24434 1.35608 1.45129 2.07811 2.25538 2.53603 2.97902 3.35087 3.61266 3.62864 3.87957 3.98014 4.11134 4.16773 4.22440 4.28794 4.31096 4.47706 4.54066 4.56703 4.62717 4.66033 4.71077 4.73782 4.93779 4.97357 5.01073 5.04878 5.08811 5.12547 5.22429 5.25015 5.30622 5.40129 5.40758 5.54043 5.56045 5.58792 5.73428 5.84922 5.93910 6.13324 6.36383 6.43890 6.57951 6.74249 6.74595 8.10606 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011516 B = 0.006334 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.786549 B = 4419.219596 C = 5720.207671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.097 3.903 3 H 0.071 0.929 4 N -0.856 5.856 5 C -0.091 4.091 6 H 0.062 0.938 7 C -0.108 4.108 8 C -0.124 4.124 9 C 0.110 3.890 10 N -0.990 5.990 11 S 2.712 3.288 12 O -1.001 7.001 13 O -1.005 7.005 14 C -0.789 4.789 15 C 0.001 3.999 16 C -0.252 4.252 17 C -0.043 4.043 18 C -0.259 4.259 19 C 0.146 3.854 20 C -0.477 4.477 21 H 0.102 0.898 22 C 0.067 3.933 23 N -0.796 5.796 24 Si 0.946 3.054 25 H -0.259 1.259 26 H -0.272 1.272 27 H -0.251 1.251 28 C 0.152 3.848 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.340 0.660 33 H 0.346 0.654 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.106 0.894 44 H 0.298 0.702 45 H 0.048 0.952 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.754 4.853 5.982 12.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.015 4.015 3 H 0.089 0.911 4 N -0.386 5.386 5 C -0.112 4.112 6 H 0.081 0.919 7 C -0.146 4.146 8 C -0.163 4.163 9 C -0.015 4.015 10 N -0.828 5.828 11 S 2.810 3.190 12 O -0.991 6.991 13 O -0.996 6.996 14 C -0.882 4.882 15 C -0.019 4.019 16 C -0.272 4.272 17 C -0.061 4.061 18 C -0.279 4.279 19 C 0.142 3.858 20 C -0.504 4.504 21 H 0.120 0.880 22 C -0.154 4.154 23 N -0.418 5.418 24 Si 0.770 3.230 25 H -0.185 1.185 26 H -0.199 1.199 27 H -0.175 1.175 28 C 0.027 3.973 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.153 0.847 33 H 0.160 0.840 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.124 0.876 44 H 0.109 0.891 45 H 0.066 0.934 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.333 4.221 5.871 11.806 hybrid contribution 0.257 0.767 -0.496 0.949 sum -9.075 4.988 5.375 11.667 Atomic orbital electron populations 1.22579 0.95596 1.02292 1.03035 1.21364 0.93275 0.97523 0.89377 0.91060 1.58709 1.68533 1.06624 1.04768 1.21562 0.94233 0.99819 0.95557 0.91948 1.21593 1.01504 0.99015 0.92492 1.21798 0.93500 1.01504 0.99539 1.21543 0.96300 0.99621 0.84066 1.57406 1.59004 1.53644 1.12792 1.00587 0.73664 0.73069 0.71643 1.93450 1.87688 1.77948 1.40058 1.93404 1.85413 1.68943 1.51831 1.30254 1.24374 1.27751 1.05839 1.20736 0.94362 0.93543 0.93255 1.20980 0.97523 1.06468 1.02231 1.21281 0.98677 0.93981 0.92187 1.21375 0.96570 1.09188 1.00741 1.17292 0.91164 0.87603 0.89782 1.20264 1.22910 1.02050 1.05219 0.88030 1.26640 0.93020 1.01411 0.94325 1.69707 1.33909 1.26774 1.11413 0.85788 0.79108 0.77012 0.81111 1.18493 1.19857 1.17508 1.21252 0.94023 0.98354 0.83679 0.90563 0.92082 0.92567 0.84658 0.83987 0.91408 0.89160 0.87852 0.92064 0.89853 0.91050 0.85438 0.84418 0.84552 0.87612 0.89078 0.93405 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 9.13 71.98 0.66 -2.53 16 2 C 0.10 2.46 2.94 44.92 0.13 2.59 16 3 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 4 N -0.86 -24.35 8.58 -168.66 -1.45 -25.80 16 5 C -0.09 -2.62 2.08 -10.72 -0.02 -2.64 16 6 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 7 C -0.11 -2.41 4.86 30.62 0.15 -2.26 16 8 C -0.12 -2.87 6.06 30.53 0.19 -2.69 16 9 C 0.11 3.34 6.42 86.22 0.55 3.89 16 10 N -0.99 -38.36 3.26 -513.85 -1.67 -40.04 16 11 S 2.71 124.77 5.09 -56.49 -0.29 124.49 16 12 O -1.00 -53.04 14.26 -128.00 -1.83 -54.87 16 13 O -1.01 -46.00 15.79 -128.00 -2.02 -48.02 16 14 C -0.79 -37.73 5.96 22.73 0.14 -37.59 16 15 C 0.00 0.03 9.54 22.22 0.21 0.24 16 16 C -0.25 -9.73 10.05 22.46 0.23 -9.51 16 17 C -0.04 -1.71 10.02 22.22 0.22 -1.49 16 18 C -0.26 -12.03 7.09 22.73 0.16 -11.86 16 19 C 0.15 7.42 5.09 -21.29 -0.11 7.31 16 20 C -0.48 -25.39 7.32 23.46 0.17 -25.22 16 21 H 0.10 5.97 4.34 -2.91 -0.01 5.96 16 22 C 0.07 3.35 5.44 85.26 0.46 3.81 16 23 N -0.80 -39.95 13.93 21.83 0.30 -39.64 16 24 Si 0.95 39.66 24.48 68.60 1.68 41.34 16 25 H -0.26 -10.40 6.71 99.48 0.67 -9.74 16 26 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 27 H -0.25 -10.84 6.78 99.48 0.67 -10.17 16 28 C 0.15 5.89 3.99 86.36 0.34 6.23 16 29 H 0.08 1.18 6.41 -2.39 -0.02 1.16 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.34 9.11 9.00 -89.70 -0.81 8.30 16 33 H 0.35 8.46 9.07 -89.70 -0.81 7.64 16 34 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.09 1.53 6.37 -2.38 -0.02 1.51 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 38 H 0.08 2.52 7.11 -2.39 -0.02 2.51 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.13 4.94 7.32 -2.91 -0.02 4.92 16 41 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 42 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 43 H 0.11 4.79 4.72 -2.91 -0.01 4.77 16 44 H 0.30 13.36 8.30 -92.70 -0.77 12.59 16 45 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.08 3.64 5.22 -2.39 -0.01 3.63 16 Total: -1.00 -65.77 359.22 -2.46 -68.22 By element: Atomic # 1 Polarization: 46.70 SS G_CDS: -0.67 Total: 46.03 kcal Atomic # 6 Polarization: -75.19 SS G_CDS: 3.48 Total: -71.71 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -2.82 Total: -105.48 kcal Atomic # 8 Polarization: -99.04 SS G_CDS: -3.85 Total: -102.89 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 1.68 Total: 41.34 kcal Atomic # 16 Polarization: 124.77 SS G_CDS: -0.29 Total: 124.49 kcal Total: -65.77 -2.46 -68.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337913.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.502 kcal (2) G-P(sol) polarization free energy of solvation -65.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds