Wall clock time and date at job start Tue Mar 31 2020 20:39:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46913 * 2 1 4 4 N 1.46900 * 109.47607 * 240.00172 * 2 1 3 5 5 C 1.53001 * 109.47443 * 119.99821 * 2 1 3 6 6 H 1.09002 * 109.49623 * 304.93889 * 5 2 1 7 7 C 1.53039 * 109.49730 * 65.00245 * 5 2 1 8 8 C 1.53032 * 109.54114 * 181.35110 * 7 5 2 9 9 C 1.53203 * 109.31129 * 298.63382 * 8 7 5 10 10 N 1.46929 * 108.77188 * 54.63519 * 9 8 7 11 11 S 1.65601 * 120.62623 * 126.37035 * 10 9 8 12 12 O 1.42096 * 106.40315 * 330.09999 * 11 10 9 13 13 O 1.42104 * 106.39515 * 197.18024 * 11 10 9 14 14 C 1.76198 * 107.21929 * 83.64545 * 11 10 9 15 15 C 1.37645 * 120.12379 * 244.43662 * 14 11 10 16 16 C 1.38607 * 120.24657 * 180.02562 * 15 14 11 17 17 C 1.38659 * 120.50621 * 359.97438 * 16 15 14 18 18 C 1.37597 * 120.24460 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.13208 * 64.45249 * 14 11 10 20 20 C 1.41390 * 120.24147 * 0.02562 * 19 14 11 21 21 H 1.07999 * 119.99930 * 30.70056 * 20 19 14 22 22 C 1.39945 * 119.99942 * 210.69289 * 20 19 14 23 23 N 1.30827 * 119.99879 * 10.97965 * 22 20 19 24 24 Si 1.86806 * 120.00126 * 190.97816 * 22 20 19 25 25 H 1.48495 * 109.47163 * 90.00118 * 24 22 20 26 26 H 1.48497 * 109.47071 * 210.00224 * 24 22 20 27 27 H 1.48501 * 109.47051 * 330.00137 * 24 22 20 28 28 C 1.46927 * 118.73898 * 306.64180 * 10 9 8 29 29 H 1.09004 * 109.46471 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47194 * 299.99705 * 1 2 3 31 31 H 1.09000 * 109.47381 * 60.00155 * 1 2 3 32 32 H 1.00903 * 110.99529 * 296.04512 * 4 2 1 33 33 H 1.00897 * 110.99905 * 59.99185 * 4 2 1 34 34 H 1.09001 * 109.46006 * 61.32584 * 7 5 2 35 35 H 1.09001 * 109.44884 * 301.36578 * 7 5 2 36 36 H 1.08996 * 109.50233 * 178.68570 * 8 7 5 37 37 H 1.09002 * 109.52933 * 58.59910 * 8 7 5 38 38 H 1.08994 * 109.58318 * 294.84608 * 9 8 7 39 39 H 1.08999 * 109.58683 * 174.42027 * 9 8 7 40 40 H 1.08001 * 119.87639 * 0.04355 * 15 14 11 41 41 H 1.07999 * 119.75144 * 179.97438 * 16 15 14 42 42 H 1.08002 * 119.87811 * 180.27855 * 17 16 15 43 43 H 1.08001 * 120.12766 * 180.02562 * 18 17 16 44 44 H 0.96998 * 119.99606 * 179.97438 * 23 22 20 45 45 H 1.08995 * 109.58719 * 173.14474 * 28 10 9 46 46 H 1.08996 * 109.58472 * 293.57281 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6924 -1.1994 5 6 2.0401 -0.7212 1.2492 6 1 1.6065 -0.2613 2.1373 7 6 1.6356 -2.1959 1.1886 8 6 2.1161 -2.9109 2.4534 9 6 3.6441 -2.8314 2.5309 10 7 4.0493 -1.4218 2.4436 11 16 5.0303 -0.7530 3.5980 12 8 4.7568 -1.4463 4.8078 13 8 4.9044 0.6561 3.4641 14 6 6.6916 -1.1475 3.1630 15 6 7.4480 -1.9528 3.9839 16 6 8.7553 -2.2643 3.6444 17 6 9.3159 -1.7705 2.4764 18 6 8.5783 -0.9637 1.6407 19 6 7.2501 -0.6405 1.9753 20 6 6.4829 0.1884 1.1247 21 1 5.7196 0.8294 1.5403 22 6 6.7127 0.1781 -0.2557 23 7 7.4774 -0.7422 -0.7847 24 14 5.9277 1.4786 -1.3430 25 1 6.8366 2.6478 -1.4513 26 1 5.6852 0.9132 -2.6945 27 1 4.6370 1.9084 -0.7474 28 6 3.5625 -0.6154 1.3160 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7503 -1.6648 -1.1909 33 1 1.6962 -0.2350 -2.0385 34 1 2.0896 -2.6613 0.3137 35 1 0.5505 -2.2721 1.1184 36 1 1.8074 -3.9557 2.4203 37 1 1.6820 -2.4309 3.3305 38 1 4.0814 -3.3893 1.7029 39 1 3.9843 -3.2515 3.4774 40 1 7.0213 -2.3435 4.8959 41 1 9.3417 -2.8965 4.2947 42 1 10.3340 -2.0234 2.2195 43 1 9.0168 -0.5805 0.7311 44 1 7.6363 -0.7495 -1.7415 45 1 3.8490 0.4262 1.4612 46 1 3.9931 -0.9888 0.3870 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601337914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:02 Heat of formation + Delta-G solvation = -67.924528 kcal Electronic energy + Delta-G solvation = -29603.549804 eV Core-core repulsion = 25811.873372 eV Total energy + Delta-G solvation = -3791.676432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -38.93495 -37.53441 -36.31399 -35.53337 -34.82837 -33.81897 -31.62969 -30.19459 -30.14251 -29.50282 -28.51869 -25.48974 -24.49754 -23.15213 -21.63512 -21.23759 -21.03751 -19.16138 -18.02095 -17.53667 -17.06532 -16.10759 -15.93460 -15.42040 -15.20225 -14.65322 -14.40949 -14.26762 -13.96150 -13.55954 -13.37306 -13.14740 -13.08700 -12.94063 -12.74484 -12.70123 -12.61364 -11.90230 -11.69280 -11.60264 -11.31375 -11.21395 -11.18380 -11.11797 -11.05616 -10.99126 -10.63422 -10.60556 -10.52597 -10.44918 -10.09473 -9.85982 -9.78797 -9.38283 -9.17304 -8.63231 -8.18314 -7.94372 -7.52995 -6.97096 -4.71343 1.56768 2.39616 2.78892 3.05459 3.11109 3.18414 3.86053 3.92495 4.45989 4.64772 4.76579 4.85310 4.89837 5.11326 5.22242 5.30616 5.33938 5.39755 5.51041 5.65139 5.71359 5.78370 5.81705 5.88879 5.93176 6.06587 6.10752 6.15557 6.23594 6.27500 6.29351 6.40219 6.45358 6.50125 6.78795 6.89276 6.90327 7.02601 7.11639 7.26100 7.35468 7.40205 7.54763 7.56842 7.74772 7.85191 8.00000 8.40852 8.59417 8.71189 9.96492 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010851 B = 0.006713 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.748038 B = 4169.883179 C = 5835.698852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.091 3.909 3 H 0.083 0.917 4 N -0.839 5.839 5 C -0.097 4.097 6 H 0.072 0.928 7 C -0.113 4.113 8 C -0.129 4.129 9 C 0.126 3.874 10 N -0.991 5.991 11 S 2.704 3.296 12 O -0.999 6.999 13 O -0.976 6.976 14 C -0.776 4.776 15 C -0.005 4.005 16 C -0.249 4.249 17 C -0.078 4.078 18 C -0.156 4.156 19 C 0.193 3.807 20 C -0.472 4.472 21 H 0.112 0.888 22 C 0.086 3.914 23 N -0.779 5.779 24 Si 0.911 3.089 25 H -0.270 1.270 26 H -0.274 1.274 27 H -0.249 1.249 28 C 0.137 3.863 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.339 0.661 33 H 0.336 0.664 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.093 0.907 43 H 0.122 0.878 44 H 0.285 0.715 45 H 0.093 0.907 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.723 -2.354 -2.907 11.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.021 4.021 3 H 0.102 0.898 4 N -0.369 5.369 5 C -0.117 4.117 6 H 0.090 0.910 7 C -0.151 4.151 8 C -0.168 4.168 9 C -0.001 4.001 10 N -0.827 5.827 11 S 2.804 3.196 12 O -0.989 6.989 13 O -0.966 6.966 14 C -0.871 4.871 15 C -0.024 4.024 16 C -0.270 4.270 17 C -0.097 4.097 18 C -0.175 4.175 19 C 0.188 3.812 20 C -0.500 4.500 21 H 0.130 0.870 22 C -0.136 4.136 23 N -0.402 5.402 24 Si 0.735 3.265 25 H -0.196 1.196 26 H -0.199 1.199 27 H -0.173 1.173 28 C 0.012 3.988 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.149 0.851 34 H 0.087 0.913 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.124 0.876 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.140 0.860 44 H 0.096 0.904 45 H 0.111 0.889 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.214 -1.775 -2.138 10.585 hybrid contribution -0.578 -0.114 -1.281 1.410 sum -10.792 -1.890 -3.419 11.477 Atomic orbital electron populations 1.22669 0.98094 1.01836 1.01920 1.21416 0.91519 0.98700 0.90478 0.89844 1.58886 1.67557 1.06690 1.03811 1.21541 0.97757 0.95661 0.96779 0.91011 1.21564 0.99666 0.95446 0.98417 1.21850 0.96378 1.00210 0.98352 1.21241 0.94326 0.82106 1.02378 1.57511 1.64570 1.18722 1.41858 1.00930 0.73973 0.73008 0.71716 1.93423 1.85750 1.75718 1.44057 1.93457 1.87171 1.29795 1.86192 1.29905 1.22273 1.22767 1.12136 1.20234 0.93867 0.92519 0.95828 1.20480 0.96670 1.09628 1.00189 1.20896 0.97797 0.96614 0.94425 1.21491 0.94368 1.01755 0.99933 1.17011 0.91018 0.85814 0.87319 1.20437 1.17846 1.20219 0.91542 0.87028 1.25937 0.93515 0.95125 0.98977 1.69792 1.28195 1.28028 1.14223 0.86225 0.80956 0.80456 0.78899 1.19565 1.19861 1.17262 1.21400 0.91242 0.96217 0.89900 0.92530 0.92155 0.93035 0.84694 0.85131 0.91263 0.92510 0.91386 0.91778 0.91721 0.89826 0.87587 0.88805 0.88910 0.86037 0.90366 0.88928 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.79 9.24 37.16 0.34 -1.45 16 2 C 0.09 1.11 3.14 -67.71 -0.21 0.90 16 3 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 4 N -0.84 -9.90 8.55 -4.67 -0.04 -9.94 16 5 C -0.10 -1.36 2.15 -90.72 -0.19 -1.56 16 6 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 7 C -0.11 -1.36 4.45 -26.69 -0.12 -1.48 16 8 C -0.13 -1.66 6.08 -26.61 -0.16 -1.82 16 9 C 0.13 2.03 6.46 -3.70 -0.02 2.00 16 10 N -0.99 -18.90 3.25 -113.76 -0.37 -19.27 16 11 S 2.70 60.92 5.10 -107.50 -0.55 60.37 16 12 O -1.00 -23.16 15.75 -57.17 -0.90 -24.06 16 13 O -0.98 -23.91 14.37 -57.17 -0.82 -24.73 16 14 C -0.78 -18.97 5.96 -38.87 -0.23 -19.20 16 15 C 0.00 -0.11 9.53 -39.66 -0.38 -0.48 16 16 C -0.25 -5.58 10.05 -39.29 -0.39 -5.97 16 17 C -0.08 -1.79 10.02 -39.66 -0.40 -2.19 16 18 C -0.16 -3.90 8.65 -38.87 -0.34 -4.24 16 19 C 0.19 4.96 5.52 -106.83 -0.59 4.37 16 20 C -0.47 -11.75 6.70 -37.74 -0.25 -12.00 16 21 H 0.11 2.80 4.01 -52.49 -0.21 2.59 16 22 C 0.09 2.00 5.24 -17.34 -0.09 1.91 16 23 N -0.78 -18.54 10.99 55.55 0.61 -17.93 16 24 Si 0.91 18.06 29.57 -169.99 -5.03 13.03 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 27 H -0.25 -4.83 7.11 56.52 0.40 -4.43 16 28 C 0.14 2.49 4.08 -3.93 -0.02 2.47 16 29 H 0.06 0.51 6.54 -51.93 -0.34 0.17 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.34 3.56 6.90 -39.29 -0.27 3.29 16 33 H 0.34 3.37 9.04 -39.29 -0.36 3.02 16 34 H 0.07 0.83 6.59 -51.93 -0.34 0.49 16 35 H 0.06 0.58 6.50 -51.93 -0.34 0.24 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.08 1.37 7.08 -51.93 -0.37 1.00 16 40 H 0.11 2.28 7.33 -52.49 -0.38 1.90 16 41 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 43 H 0.12 3.07 6.38 -52.49 -0.34 2.73 16 44 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 45 H 0.09 1.86 5.46 -51.93 -0.28 1.57 16 46 H 0.09 1.65 7.57 -51.93 -0.39 1.26 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -29.08 360.99 -11.27 -40.35 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -6.56 Total: 15.47 kcal Atomic # 6 Polarization: -35.68 SS G_CDS: -3.06 Total: -38.74 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: 0.20 Total: -47.13 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -1.72 Total: -48.79 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Atomic # 16 Polarization: 60.92 SS G_CDS: -0.55 Total: 60.37 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.08 -11.27 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.570 kcal (2) G-P(sol) polarization free energy of solvation -29.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds