Wall clock time and date at job start Tue Mar 31 2020 20:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46913 * 2 1 4 4 N 1.46900 * 109.47607 * 240.00172 * 2 1 3 5 5 C 1.53001 * 109.47443 * 119.99821 * 2 1 3 6 6 H 1.09002 * 109.49623 * 304.93889 * 5 2 1 7 7 C 1.53039 * 109.49730 * 65.00245 * 5 2 1 8 8 C 1.53032 * 109.54114 * 181.35110 * 7 5 2 9 9 C 1.53203 * 109.31129 * 298.63382 * 8 7 5 10 10 N 1.46929 * 108.77188 * 54.63519 * 9 8 7 11 11 S 1.65601 * 120.62623 * 126.37035 * 10 9 8 12 12 O 1.42096 * 106.40315 * 330.09999 * 11 10 9 13 13 O 1.42104 * 106.39515 * 197.18024 * 11 10 9 14 14 C 1.76198 * 107.21929 * 83.64545 * 11 10 9 15 15 C 1.37645 * 120.12379 * 244.43662 * 14 11 10 16 16 C 1.38607 * 120.24657 * 180.02562 * 15 14 11 17 17 C 1.38659 * 120.50621 * 359.97438 * 16 15 14 18 18 C 1.37597 * 120.24460 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.13208 * 64.45249 * 14 11 10 20 20 C 1.41390 * 120.24147 * 0.02562 * 19 14 11 21 21 H 1.07999 * 119.99930 * 30.70056 * 20 19 14 22 22 C 1.39945 * 119.99942 * 210.69289 * 20 19 14 23 23 N 1.30827 * 119.99879 * 10.97965 * 22 20 19 24 24 Si 1.86806 * 120.00126 * 190.97816 * 22 20 19 25 25 H 1.48495 * 109.47163 * 90.00118 * 24 22 20 26 26 H 1.48497 * 109.47071 * 210.00224 * 24 22 20 27 27 H 1.48501 * 109.47051 * 330.00137 * 24 22 20 28 28 C 1.46927 * 118.73898 * 306.64180 * 10 9 8 29 29 H 1.09004 * 109.46471 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47194 * 299.99705 * 1 2 3 31 31 H 1.09000 * 109.47381 * 60.00155 * 1 2 3 32 32 H 1.00903 * 110.99529 * 296.04512 * 4 2 1 33 33 H 1.00897 * 110.99905 * 59.99185 * 4 2 1 34 34 H 1.09001 * 109.46006 * 61.32584 * 7 5 2 35 35 H 1.09001 * 109.44884 * 301.36578 * 7 5 2 36 36 H 1.08996 * 109.50233 * 178.68570 * 8 7 5 37 37 H 1.09002 * 109.52933 * 58.59910 * 8 7 5 38 38 H 1.08994 * 109.58318 * 294.84608 * 9 8 7 39 39 H 1.08999 * 109.58683 * 174.42027 * 9 8 7 40 40 H 1.08001 * 119.87639 * 0.04355 * 15 14 11 41 41 H 1.07999 * 119.75144 * 179.97438 * 16 15 14 42 42 H 1.08002 * 119.87811 * 180.27855 * 17 16 15 43 43 H 1.08001 * 120.12766 * 180.02562 * 18 17 16 44 44 H 0.96998 * 119.99606 * 179.97438 * 23 22 20 45 45 H 1.08995 * 109.58719 * 173.14474 * 28 10 9 46 46 H 1.08996 * 109.58472 * 293.57281 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6924 -1.1994 5 6 2.0401 -0.7212 1.2492 6 1 1.6065 -0.2613 2.1373 7 6 1.6356 -2.1959 1.1886 8 6 2.1161 -2.9109 2.4534 9 6 3.6441 -2.8314 2.5309 10 7 4.0493 -1.4218 2.4436 11 16 5.0303 -0.7530 3.5980 12 8 4.7568 -1.4463 4.8078 13 8 4.9044 0.6561 3.4641 14 6 6.6916 -1.1475 3.1630 15 6 7.4480 -1.9528 3.9839 16 6 8.7553 -2.2643 3.6444 17 6 9.3159 -1.7705 2.4764 18 6 8.5783 -0.9637 1.6407 19 6 7.2501 -0.6405 1.9753 20 6 6.4829 0.1884 1.1247 21 1 5.7196 0.8294 1.5403 22 6 6.7127 0.1781 -0.2557 23 7 7.4774 -0.7422 -0.7847 24 14 5.9277 1.4786 -1.3430 25 1 6.8366 2.6478 -1.4513 26 1 5.6852 0.9132 -2.6945 27 1 4.6370 1.9084 -0.7474 28 6 3.5625 -0.6154 1.3160 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7503 -1.6648 -1.1909 33 1 1.6962 -0.2350 -2.0385 34 1 2.0896 -2.6613 0.3137 35 1 0.5505 -2.2721 1.1184 36 1 1.8074 -3.9557 2.4203 37 1 1.6820 -2.4309 3.3305 38 1 4.0814 -3.3893 1.7029 39 1 3.9843 -3.2515 3.4774 40 1 7.0213 -2.3435 4.8959 41 1 9.3417 -2.8965 4.2947 42 1 10.3340 -2.0234 2.2195 43 1 9.0168 -0.5805 0.7311 44 1 7.6363 -0.7495 -1.7415 45 1 3.8490 0.4262 1.4612 46 1 3.9931 -0.9888 0.3870 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601337914.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:01 Heat of formation + Delta-G solvation = -86.999502 kcal Electronic energy + Delta-G solvation = -29604.376957 eV Core-core repulsion = 25811.873372 eV Total energy + Delta-G solvation = -3792.503585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.09092 -39.35794 -38.15004 -36.72738 -36.63479 -35.62408 -32.86888 -31.96058 -31.38556 -31.31497 -29.38995 -27.32104 -25.69184 -24.37350 -23.42466 -22.93021 -22.35419 -20.28444 -19.71914 -19.30044 -18.69404 -17.74653 -17.13950 -17.05547 -16.83061 -16.05755 -15.82771 -15.46349 -15.39112 -15.09459 -14.95041 -14.66717 -14.44362 -14.36074 -14.08067 -13.80434 -13.68106 -13.62389 -13.25959 -13.05190 -12.98060 -12.91347 -12.83208 -12.77456 -12.50180 -12.36936 -12.15743 -12.09556 -11.88992 -11.65684 -11.61869 -11.26045 -11.15837 -11.04695 -10.96167 -9.88751 -9.71245 -9.39996 -9.34830 -8.75460 -6.58750 -0.17221 0.54740 0.98620 1.40354 1.51448 1.54294 2.20603 2.28764 2.65489 3.00568 3.50268 3.63149 3.77176 3.80764 3.93268 4.08126 4.22349 4.25520 4.31193 4.38755 4.49701 4.56243 4.59462 4.67392 4.70743 4.71513 4.93573 4.98977 5.00855 5.04467 5.11772 5.16111 5.17323 5.20861 5.30991 5.33138 5.40073 5.53054 5.55764 5.61129 5.70804 5.85458 5.94673 6.00459 6.15765 6.41462 6.53787 6.74956 6.76570 6.85258 8.20730 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010851 B = 0.006713 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.748038 B = 4169.883179 C = 5835.698852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.094 3.906 3 H 0.064 0.936 4 N -0.853 5.853 5 C -0.095 4.095 6 H 0.069 0.931 7 C -0.107 4.107 8 C -0.124 4.124 9 C 0.115 3.885 10 N -0.988 5.988 11 S 2.715 3.285 12 O -1.008 7.008 13 O -1.002 7.002 14 C -0.797 4.797 15 C -0.019 4.019 16 C -0.250 4.250 17 C -0.077 4.077 18 C -0.184 4.184 19 C 0.166 3.834 20 C -0.490 4.490 21 H 0.102 0.898 22 C 0.059 3.941 23 N -0.800 5.800 24 Si 0.961 3.039 25 H -0.270 1.270 26 H -0.258 1.258 27 H -0.248 1.248 28 C 0.140 3.860 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.347 0.653 33 H 0.347 0.653 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.120 0.880 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.112 0.888 44 H 0.294 0.706 45 H 0.065 0.935 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.404 -3.509 -3.731 13.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.019 4.019 3 H 0.082 0.918 4 N -0.385 5.385 5 C -0.116 4.116 6 H 0.087 0.913 7 C -0.145 4.145 8 C -0.163 4.163 9 C -0.010 4.010 10 N -0.825 5.825 11 S 2.814 3.186 12 O -0.999 6.999 13 O -0.993 6.993 14 C -0.890 4.890 15 C -0.039 4.039 16 C -0.270 4.270 17 C -0.096 4.096 18 C -0.203 4.203 19 C 0.162 3.838 20 C -0.518 4.518 21 H 0.120 0.880 22 C -0.160 4.160 23 N -0.423 5.423 24 Si 0.782 3.218 25 H -0.196 1.196 26 H -0.182 1.182 27 H -0.172 1.172 28 C 0.015 3.985 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.138 0.862 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.130 0.870 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.874 -2.947 -2.958 12.587 hybrid contribution 0.015 0.183 -0.980 0.997 sum -11.859 -2.764 -3.939 12.798 Atomic orbital electron populations 1.22555 0.95539 1.02884 1.02537 1.21301 0.93398 0.97372 0.89788 0.91754 1.58832 1.68197 1.07390 1.04114 1.21532 0.94415 0.97800 0.97808 0.91305 1.21553 1.01483 0.93398 0.98026 1.21863 0.93342 1.02331 0.98760 1.21542 0.97110 0.80166 1.02216 1.57318 1.63577 1.20168 1.41477 1.00461 0.73676 0.72423 0.72061 1.93395 1.85774 1.75745 1.44981 1.93411 1.87411 1.31721 1.86741 1.30270 1.23783 1.22909 1.12072 1.20562 0.94542 0.92514 0.96246 1.20884 0.96528 1.09330 1.00300 1.21244 0.98986 0.95363 0.94001 1.21542 0.94706 1.03527 1.00565 1.17323 0.91668 0.86634 0.88173 1.20466 1.18128 1.20696 0.92473 0.88031 1.26520 0.93721 0.96429 0.99361 1.69808 1.28675 1.28852 1.15001 0.85485 0.80144 0.78249 0.77963 1.19555 1.18199 1.17152 1.21360 0.94186 0.94346 0.88573 0.91190 0.92145 0.91866 0.83746 0.83948 0.90929 0.89496 0.88242 0.92010 0.91531 0.90331 0.86229 0.85477 0.85945 0.87029 0.89507 0.91678 0.91011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 9.24 71.98 0.66 -2.23 16 2 C 0.09 2.16 3.14 44.91 0.14 2.30 16 3 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 4 N -0.85 -18.61 8.55 -168.68 -1.44 -20.06 16 5 C -0.09 -2.57 2.15 -10.86 -0.02 -2.59 16 6 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 7 C -0.11 -2.28 4.45 30.62 0.14 -2.15 16 8 C -0.12 -2.89 6.08 30.67 0.19 -2.71 16 9 C 0.11 3.63 6.46 86.37 0.56 4.18 16 10 N -0.99 -38.17 3.25 -513.84 -1.67 -39.84 16 11 S 2.72 125.62 5.10 -56.49 -0.29 125.33 16 12 O -1.01 -47.27 15.75 -128.00 -2.02 -49.29 16 13 O -1.00 -51.18 14.37 -128.00 -1.84 -53.02 16 14 C -0.80 -39.90 5.96 22.73 0.14 -39.76 16 15 C -0.02 -0.88 9.53 22.22 0.21 -0.67 16 16 C -0.25 -10.91 10.05 22.46 0.23 -10.68 16 17 C -0.08 -3.49 10.02 22.22 0.22 -3.27 16 18 C -0.18 -9.38 8.65 22.73 0.20 -9.19 16 19 C 0.17 8.82 5.52 -21.29 -0.12 8.70 16 20 C -0.49 -25.24 6.70 23.46 0.16 -25.08 16 21 H 0.10 5.35 4.01 -2.91 -0.01 5.34 16 22 C 0.06 2.81 5.24 85.26 0.45 3.25 16 23 N -0.80 -38.62 10.99 21.83 0.24 -38.38 16 24 Si 0.96 37.26 29.57 68.60 2.03 39.29 16 25 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 26 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 27 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 28 C 0.14 5.16 4.08 86.22 0.35 5.51 16 29 H 0.07 0.97 6.54 -2.38 -0.02 0.96 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.35 6.45 6.90 -89.69 -0.62 5.83 16 33 H 0.35 6.25 9.04 -89.70 -0.81 5.44 16 34 H 0.07 1.53 6.59 -2.39 -0.02 1.52 16 35 H 0.09 1.39 6.50 -2.39 -0.02 1.38 16 36 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.08 2.54 7.08 -2.39 -0.02 2.52 16 40 H 0.12 5.12 7.33 -2.91 -0.02 5.10 16 41 H 0.13 4.61 8.06 -2.91 -0.02 4.59 16 42 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 43 H 0.11 5.80 6.38 -2.91 -0.02 5.78 16 44 H 0.29 12.81 8.30 -92.71 -0.77 12.04 16 45 H 0.06 2.74 5.46 -2.39 -0.01 2.72 16 46 H 0.07 2.81 7.57 -2.39 -0.02 2.80 16 Total: -1.00 -64.16 360.99 -1.90 -66.06 By element: Atomic # 1 Polarization: 44.67 SS G_CDS: -0.41 Total: 44.26 kcal Atomic # 6 Polarization: -77.86 SS G_CDS: 3.49 Total: -74.37 kcal Atomic # 7 Polarization: -95.40 SS G_CDS: -2.87 Total: -98.27 kcal Atomic # 8 Polarization: -98.45 SS G_CDS: -3.86 Total: -102.31 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Atomic # 16 Polarization: 125.62 SS G_CDS: -0.29 Total: 125.33 kcal Total: -64.16 -1.90 -66.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337914.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.935 kcal (2) G-P(sol) polarization free energy of solvation -64.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds