Wall clock time and date at job start Tue Mar 31 2020 20:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47576 * 2 1 4 4 N 1.46907 * 109.46976 * 119.99782 * 2 1 3 5 5 C 1.52993 * 109.47383 * 239.99849 * 2 1 3 6 6 H 1.08999 * 109.49731 * 303.72929 * 5 2 1 7 7 C 1.53041 * 109.49959 * 63.79268 * 5 2 1 8 8 C 1.53039 * 109.54188 * 181.28601 * 7 5 2 9 9 C 1.53192 * 109.33760 * 298.68298 * 8 7 5 10 10 N 1.46921 * 108.77730 * 54.62005 * 9 8 7 11 11 S 1.65603 * 120.62997 * 126.36677 * 10 9 8 12 12 O 1.42092 * 106.40117 * 32.89696 * 11 10 9 13 13 O 1.42099 * 106.39650 * 165.81662 * 11 10 9 14 14 C 1.76198 * 107.21885 * 279.35363 * 11 10 9 15 15 C 1.37641 * 120.12408 * 110.50057 * 14 11 10 16 16 C 1.38614 * 120.24667 * 179.97438 * 15 14 11 17 17 C 1.38650 * 120.50101 * 0.02562 * 16 15 14 18 18 C 1.37594 * 120.25203 * 0.02562 * 17 16 15 19 19 C 1.40694 * 120.13191 * 290.22730 * 14 11 10 20 20 C 1.41399 * 120.24369 * 359.97438 * 19 14 11 21 21 H 1.08004 * 119.99798 * 43.47183 * 20 19 14 22 22 C 1.39944 * 120.00164 * 223.48085 * 20 19 14 23 23 N 1.30826 * 119.99461 * 203.76478 * 22 20 19 24 24 Si 1.86794 * 120.00208 * 23.75874 * 22 20 19 25 25 H 1.48496 * 109.47328 * 95.16250 * 24 22 20 26 26 H 1.48506 * 109.47209 * 215.16566 * 24 22 20 27 27 H 1.48504 * 109.47008 * 335.16158 * 24 22 20 28 28 C 1.46929 * 118.73634 * 306.39028 * 10 9 8 29 29 H 1.09001 * 109.47107 * 300.00322 * 1 2 3 30 30 H 1.08993 * 109.46847 * 59.99911 * 1 2 3 31 31 H 1.09001 * 109.46974 * 180.02562 * 1 2 3 32 32 H 1.00899 * 110.99872 * 57.60220 * 4 2 1 33 33 H 1.00900 * 110.99912 * 181.55190 * 4 2 1 34 34 H 1.09001 * 109.45817 * 301.33778 * 7 5 2 35 35 H 1.08997 * 109.45710 * 61.29470 * 7 5 2 36 36 H 1.08999 * 109.49457 * 178.71419 * 8 7 5 37 37 H 1.09007 * 109.49494 * 58.65266 * 8 7 5 38 38 H 1.08997 * 109.58338 * 294.82719 * 9 8 7 39 39 H 1.09000 * 109.70132 * 174.47640 * 9 8 7 40 40 H 1.07999 * 119.87654 * 359.97438 * 15 14 11 41 41 H 1.08002 * 119.74516 * 179.97438 * 16 15 14 42 42 H 1.08008 * 119.87245 * 180.02562 * 17 16 15 43 43 H 1.07996 * 120.12967 * 179.97438 * 18 17 16 44 44 H 0.97008 * 119.99233 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.58603 * 293.81723 * 28 10 9 46 46 H 1.09003 * 109.57978 * 173.39436 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0400 -0.7212 -1.2491 6 1 1.6234 -1.7279 -1.2836 7 6 1.6097 0.0526 -2.4974 8 6 2.0919 -0.6850 -3.7486 9 6 3.6216 -0.7653 -3.7322 10 7 4.0494 -1.3788 -2.4676 11 16 5.0534 -2.6958 -2.4660 12 8 5.9087 -2.5497 -3.5912 13 8 5.5350 -2.8315 -1.1360 14 6 4.0550 -4.1132 -2.7805 15 6 4.1680 -4.7863 -3.9757 16 6 3.3842 -5.9019 -4.2257 17 6 2.4784 -6.3523 -3.2775 18 6 2.3477 -5.6943 -2.0761 19 6 3.1432 -4.5646 -1.8087 20 6 3.0229 -3.8848 -0.5747 21 1 2.9965 -2.8053 -0.5532 22 6 2.9381 -4.6107 0.6187 23 7 2.3781 -4.0741 1.6723 24 14 3.6245 -6.3457 0.7074 25 1 5.0066 -6.3042 1.2489 26 1 2.7689 -7.1717 1.5968 27 1 3.6436 -6.9406 -0.6531 28 6 3.5692 -0.8020 -1.2045 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6643 -1.6358 1.2428 33 1 3.0280 -0.6839 1.2357 34 1 0.5228 0.1323 -2.5185 35 1 2.0464 1.0511 -2.4741 36 1 1.7654 -0.1453 -4.6375 37 1 1.6747 -1.6920 -3.7606 38 1 4.0410 0.2376 -3.8121 39 1 3.9666 -1.3733 -4.5684 40 1 4.8701 -4.4441 -4.7216 41 1 3.4793 -6.4238 -5.1664 42 1 1.8730 -7.2229 -3.4827 43 1 1.6412 -6.0466 -1.3392 44 1 2.3190 -4.5774 2.4994 45 1 3.9844 0.1979 -1.0783 46 1 3.8775 -1.4356 -0.3729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601337915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:06 Heat of formation + Delta-G solvation = -61.233542 kcal Electronic energy + Delta-G solvation = -30126.010650 eV Core-core repulsion = 26334.624361 eV Total energy + Delta-G solvation = -3791.386289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -38.92320 -37.86032 -36.41881 -35.26495 -34.92018 -33.78215 -31.91008 -30.70844 -30.11478 -29.80763 -28.37033 -25.42559 -24.08982 -23.26195 -22.02814 -21.16242 -20.67426 -19.68102 -18.20932 -17.72651 -17.28919 -16.29210 -15.67616 -15.37042 -15.04552 -14.63659 -14.34108 -14.14916 -14.02796 -13.91033 -13.55019 -13.44376 -13.23613 -12.94578 -12.70708 -12.60601 -12.26610 -11.94188 -11.84272 -11.41141 -11.31567 -11.23059 -11.21478 -11.13638 -11.04778 -11.00131 -10.88241 -10.69724 -10.45121 -10.38815 -10.18091 -10.07163 -9.94371 -9.52158 -9.30001 -8.48556 -8.23474 -8.02807 -7.68094 -7.14978 -4.79853 1.36055 2.04195 2.47752 3.01924 3.15246 3.20936 3.72311 3.90070 4.29341 4.64155 4.90355 4.94788 5.02689 5.12384 5.22575 5.29311 5.41165 5.49721 5.64484 5.68971 5.77429 5.80366 5.84398 5.89244 5.92633 6.00744 6.06853 6.11075 6.14972 6.19225 6.27612 6.37557 6.42757 6.47868 6.55527 6.63557 6.67791 6.82033 6.95218 7.05045 7.08240 7.25483 7.41374 7.53352 7.78985 7.83796 8.06965 8.19860 8.29347 8.55755 9.83032 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009967 B = 0.007614 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.521776 B = 3676.615176 C = 4973.949412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.096 3.904 3 H 0.069 0.931 4 N -0.850 5.850 5 C -0.142 4.142 6 H 0.094 0.906 7 C -0.106 4.106 8 C -0.135 4.135 9 C 0.128 3.872 10 N -0.997 5.997 11 S 2.696 3.304 12 O -0.995 6.995 13 O -0.954 6.954 14 C -0.760 4.760 15 C 0.002 3.998 16 C -0.245 4.245 17 C -0.060 4.060 18 C -0.195 4.195 19 C 0.164 3.836 20 C -0.477 4.477 21 H 0.120 0.880 22 C 0.108 3.892 23 N -0.782 5.782 24 Si 0.873 3.127 25 H -0.265 1.265 26 H -0.277 1.277 27 H -0.229 1.229 28 C 0.120 3.880 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.366 0.634 33 H 0.337 0.663 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.105 0.895 44 H 0.290 0.710 45 H 0.058 0.942 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.483 5.406 -4.856 8.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.017 4.017 3 H 0.087 0.913 4 N -0.382 5.382 5 C -0.164 4.164 6 H 0.112 0.888 7 C -0.144 4.144 8 C -0.174 4.174 9 C 0.002 3.998 10 N -0.832 5.832 11 S 2.794 3.206 12 O -0.986 6.986 13 O -0.944 6.944 14 C -0.854 4.854 15 C -0.017 4.017 16 C -0.265 4.265 17 C -0.079 4.079 18 C -0.215 4.215 19 C 0.160 3.840 20 C -0.504 4.504 21 H 0.137 0.863 22 C -0.115 4.115 23 N -0.405 5.405 24 Si 0.696 3.304 25 H -0.190 1.190 26 H -0.202 1.202 27 H -0.151 1.151 28 C -0.005 4.005 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.183 0.817 33 H 0.150 0.850 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.099 0.901 40 H 0.130 0.870 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.123 0.877 44 H 0.101 0.899 45 H 0.077 0.923 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.027 6.067 -3.992 7.868 hybrid contribution -0.019 -1.931 -0.751 2.072 sum -3.047 4.136 -4.743 6.992 Atomic orbital electron populations 1.21807 0.95088 1.02085 1.01038 1.21352 0.95149 0.97397 0.87799 0.91292 1.59108 1.14770 1.25730 1.38545 1.22513 0.95898 1.02022 0.95946 0.88793 1.21492 1.00376 0.98406 0.94155 1.21910 0.95844 1.01705 0.97930 1.21241 0.94728 0.98583 0.85227 1.57805 1.67589 1.46754 1.11058 1.01372 0.73425 0.72895 0.72945 1.93452 1.64004 1.86834 1.54278 1.93538 1.78428 1.85802 1.36630 1.30335 1.22622 1.25780 1.06618 1.20414 0.94453 0.93163 0.93700 1.20551 1.04101 1.01638 1.00256 1.20892 0.95998 0.96803 0.94167 1.21346 1.02548 1.00578 0.97051 1.17106 0.85851 0.89717 0.91360 1.19962 1.43556 0.97637 0.89220 0.86319 1.25826 0.90696 0.99978 0.94963 1.69557 1.28054 1.39831 1.03034 0.86743 0.80344 0.81968 0.81367 1.18999 1.20205 1.15108 1.21574 0.93957 0.98839 0.86145 0.92488 0.92656 0.92572 0.81679 0.85048 0.91855 0.92413 0.91559 0.91112 0.91866 0.90126 0.87026 0.88196 0.88347 0.87739 0.89886 0.92344 0.87420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.20 37.16 0.34 -1.57 16 2 C 0.10 1.40 3.01 -67.71 -0.20 1.20 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 4 N -0.85 -14.30 9.12 -4.67 -0.04 -14.34 16 5 C -0.14 -2.18 1.67 -90.50 -0.15 -2.33 16 6 H 0.09 1.72 6.79 -51.93 -0.35 1.37 16 7 C -0.11 -1.37 4.93 -26.69 -0.13 -1.50 16 8 C -0.13 -1.79 6.08 -26.61 -0.16 -1.95 16 9 C 0.13 1.90 6.35 -3.71 -0.02 1.87 16 10 N -1.00 -17.70 3.26 -113.52 -0.37 -18.07 16 11 S 2.70 57.77 5.06 -107.50 -0.54 57.22 16 12 O -0.99 -22.15 16.03 -57.17 -0.92 -23.06 16 13 O -0.95 -23.02 14.94 -57.17 -0.85 -23.87 16 14 C -0.76 -16.93 5.98 -38.87 -0.23 -17.17 16 15 C 0.00 0.05 9.53 -39.66 -0.38 -0.33 16 16 C -0.25 -4.83 10.05 -39.29 -0.39 -5.23 16 17 C -0.06 -1.19 10.02 -39.66 -0.40 -1.59 16 18 C -0.20 -4.26 6.79 -38.87 -0.26 -4.53 16 19 C 0.16 3.79 4.63 -106.82 -0.49 3.29 16 20 C -0.48 -11.09 7.19 -37.74 -0.27 -11.37 16 21 H 0.12 2.62 2.21 -52.48 -0.12 2.50 16 22 C 0.11 2.51 5.28 -17.34 -0.09 2.42 16 23 N -0.78 -17.55 13.20 55.55 0.73 -16.82 16 24 Si 0.87 18.94 26.72 -169.99 -4.54 14.40 16 25 H -0.26 -5.97 7.11 56.52 0.40 -5.57 16 26 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 27 H -0.23 -5.04 5.48 56.52 0.31 -4.73 16 28 C 0.12 2.03 4.04 -3.71 -0.01 2.02 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.64 6.50 -51.93 -0.34 0.30 16 31 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.37 6.96 8.25 -39.29 -0.32 6.63 16 33 H 0.34 5.78 7.32 -39.29 -0.29 5.49 16 34 H 0.06 0.75 6.47 -51.93 -0.34 0.42 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.08 1.20 7.40 -51.93 -0.38 0.82 16 40 H 0.11 2.16 7.33 -52.49 -0.38 1.77 16 41 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 43 H 0.10 2.19 6.97 -52.49 -0.37 1.83 16 44 H 0.29 6.09 8.30 -40.82 -0.34 5.75 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.11 2.10 4.03 -51.93 -0.21 1.89 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -26.39 355.60 -10.60 -36.99 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -6.55 Total: 18.96 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: -2.87 Total: -36.76 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: 0.32 Total: -49.23 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -1.77 Total: -46.94 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.54 Total: 14.40 kcal Atomic # 16 Polarization: 57.77 SS G_CDS: -0.54 Total: 57.22 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -26.39 -10.60 -36.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.247 kcal (2) G-P(sol) polarization free energy of solvation -26.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds