Wall clock time and date at job start Tue Mar 31 2020 20:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47576 * 2 1 4 4 N 1.46907 * 109.46976 * 119.99782 * 2 1 3 5 5 C 1.52993 * 109.47383 * 239.99849 * 2 1 3 6 6 H 1.08999 * 109.49731 * 303.72929 * 5 2 1 7 7 C 1.53041 * 109.49959 * 63.79268 * 5 2 1 8 8 C 1.53039 * 109.54188 * 181.28601 * 7 5 2 9 9 C 1.53192 * 109.33760 * 298.68298 * 8 7 5 10 10 N 1.46921 * 108.77730 * 54.62005 * 9 8 7 11 11 S 1.65603 * 120.62997 * 126.36677 * 10 9 8 12 12 O 1.42092 * 106.40117 * 32.89696 * 11 10 9 13 13 O 1.42099 * 106.39650 * 165.81662 * 11 10 9 14 14 C 1.76198 * 107.21885 * 279.35363 * 11 10 9 15 15 C 1.37641 * 120.12408 * 110.50057 * 14 11 10 16 16 C 1.38614 * 120.24667 * 179.97438 * 15 14 11 17 17 C 1.38650 * 120.50101 * 0.02562 * 16 15 14 18 18 C 1.37594 * 120.25203 * 0.02562 * 17 16 15 19 19 C 1.40694 * 120.13191 * 290.22730 * 14 11 10 20 20 C 1.41399 * 120.24369 * 359.97438 * 19 14 11 21 21 H 1.08004 * 119.99798 * 43.47183 * 20 19 14 22 22 C 1.39944 * 120.00164 * 223.48085 * 20 19 14 23 23 N 1.30826 * 119.99461 * 203.76478 * 22 20 19 24 24 Si 1.86794 * 120.00208 * 23.75874 * 22 20 19 25 25 H 1.48496 * 109.47328 * 95.16250 * 24 22 20 26 26 H 1.48506 * 109.47209 * 215.16566 * 24 22 20 27 27 H 1.48504 * 109.47008 * 335.16158 * 24 22 20 28 28 C 1.46929 * 118.73634 * 306.39028 * 10 9 8 29 29 H 1.09001 * 109.47107 * 300.00322 * 1 2 3 30 30 H 1.08993 * 109.46847 * 59.99911 * 1 2 3 31 31 H 1.09001 * 109.46974 * 180.02562 * 1 2 3 32 32 H 1.00899 * 110.99872 * 57.60220 * 4 2 1 33 33 H 1.00900 * 110.99912 * 181.55190 * 4 2 1 34 34 H 1.09001 * 109.45817 * 301.33778 * 7 5 2 35 35 H 1.08997 * 109.45710 * 61.29470 * 7 5 2 36 36 H 1.08999 * 109.49457 * 178.71419 * 8 7 5 37 37 H 1.09007 * 109.49494 * 58.65266 * 8 7 5 38 38 H 1.08997 * 109.58338 * 294.82719 * 9 8 7 39 39 H 1.09000 * 109.70132 * 174.47640 * 9 8 7 40 40 H 1.07999 * 119.87654 * 359.97438 * 15 14 11 41 41 H 1.08002 * 119.74516 * 179.97438 * 16 15 14 42 42 H 1.08008 * 119.87245 * 180.02562 * 17 16 15 43 43 H 1.07996 * 120.12967 * 179.97438 * 18 17 16 44 44 H 0.97008 * 119.99233 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.58603 * 293.81723 * 28 10 9 46 46 H 1.09003 * 109.57978 * 173.39436 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0400 -0.7212 -1.2491 6 1 1.6234 -1.7279 -1.2836 7 6 1.6097 0.0526 -2.4974 8 6 2.0919 -0.6850 -3.7486 9 6 3.6216 -0.7653 -3.7322 10 7 4.0494 -1.3788 -2.4676 11 16 5.0534 -2.6958 -2.4660 12 8 5.9087 -2.5497 -3.5912 13 8 5.5350 -2.8315 -1.1360 14 6 4.0550 -4.1132 -2.7805 15 6 4.1680 -4.7863 -3.9757 16 6 3.3842 -5.9019 -4.2257 17 6 2.4784 -6.3523 -3.2775 18 6 2.3477 -5.6943 -2.0761 19 6 3.1432 -4.5646 -1.8087 20 6 3.0229 -3.8848 -0.5747 21 1 2.9965 -2.8053 -0.5532 22 6 2.9381 -4.6107 0.6187 23 7 2.3781 -4.0741 1.6723 24 14 3.6245 -6.3457 0.7074 25 1 5.0066 -6.3042 1.2489 26 1 2.7689 -7.1717 1.5968 27 1 3.6436 -6.9406 -0.6531 28 6 3.5692 -0.8020 -1.2045 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6643 -1.6358 1.2428 33 1 3.0280 -0.6839 1.2357 34 1 0.5228 0.1323 -2.5185 35 1 2.0464 1.0511 -2.4741 36 1 1.7654 -0.1453 -4.6375 37 1 1.6747 -1.6920 -3.7606 38 1 4.0410 0.2376 -3.8121 39 1 3.9666 -1.3733 -4.5684 40 1 4.8701 -4.4441 -4.7216 41 1 3.4793 -6.4238 -5.1664 42 1 1.8730 -7.2229 -3.4827 43 1 1.6412 -6.0466 -1.3392 44 1 2.3190 -4.5774 2.4994 45 1 3.9844 0.1979 -1.0783 46 1 3.8775 -1.4356 -0.3729 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601337915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:05 Heat of formation + Delta-G solvation = -78.810046 kcal Electronic energy + Delta-G solvation = -30126.772825 eV Core-core repulsion = 26334.624361 eV Total energy + Delta-G solvation = -3792.148464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.17487 -39.47897 -38.14946 -36.68890 -36.51554 -35.47428 -33.13631 -32.36432 -31.74622 -31.06101 -29.55367 -27.09631 -25.31886 -24.48529 -23.64608 -22.83274 -21.86752 -20.92926 -19.73698 -19.39840 -18.84053 -17.91574 -17.13980 -16.97528 -16.48229 -15.97287 -15.81703 -15.61487 -15.37357 -15.15961 -15.08344 -15.01254 -14.70813 -14.39611 -14.01690 -13.95469 -13.82448 -13.55779 -13.18188 -12.99164 -12.95217 -12.88655 -12.75940 -12.59445 -12.43665 -12.40680 -12.27933 -12.02649 -11.79610 -11.74193 -11.65161 -11.46157 -11.28697 -11.07913 -11.02123 -9.92863 -9.77031 -9.35591 -9.33570 -8.86154 -6.51769 -0.26452 0.37056 0.80431 1.27394 1.39108 1.44729 2.15325 2.20200 2.60376 2.96738 3.29800 3.58059 3.75111 3.88920 3.93418 4.09614 4.16944 4.24326 4.27518 4.36341 4.47935 4.53762 4.61282 4.63136 4.65751 4.76146 4.79313 4.85675 4.93192 4.98645 5.04627 5.09985 5.12517 5.25436 5.29605 5.34962 5.41630 5.42195 5.50290 5.56331 5.63091 5.76373 5.83411 5.89221 6.14130 6.39496 6.53193 6.60351 6.73461 6.85509 8.13536 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009967 B = 0.007614 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.521776 B = 3676.615176 C = 4973.949412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.095 3.905 3 H 0.088 0.912 4 N -0.854 5.854 5 C -0.132 4.132 6 H 0.059 0.941 7 C -0.102 4.102 8 C -0.130 4.130 9 C 0.117 3.883 10 N -0.992 5.992 11 S 2.704 3.296 12 O -1.008 7.008 13 O -0.989 6.989 14 C -0.775 4.775 15 C -0.013 4.013 16 C -0.239 4.239 17 C -0.059 4.059 18 C -0.216 4.216 19 C 0.149 3.851 20 C -0.500 4.500 21 H 0.126 0.874 22 C 0.084 3.916 23 N -0.794 5.794 24 Si 0.897 3.103 25 H -0.283 1.283 26 H -0.260 1.260 27 H -0.233 1.233 28 C 0.118 3.882 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.035 0.965 32 H 0.353 0.647 33 H 0.332 0.668 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.105 0.895 44 H 0.294 0.706 45 H 0.082 0.918 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.517 6.399 -6.846 10.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.017 4.017 3 H 0.106 0.894 4 N -0.384 5.384 5 C -0.154 4.154 6 H 0.077 0.923 7 C -0.140 4.140 8 C -0.169 4.169 9 C -0.008 4.008 10 N -0.830 5.830 11 S 2.802 3.198 12 O -0.998 6.998 13 O -0.979 6.979 14 C -0.868 4.868 15 C -0.032 4.032 16 C -0.259 4.259 17 C -0.077 4.077 18 C -0.236 4.236 19 C 0.145 3.855 20 C -0.527 4.527 21 H 0.143 0.857 22 C -0.137 4.137 23 N -0.418 5.418 24 Si 0.720 3.280 25 H -0.210 1.210 26 H -0.184 1.184 27 H -0.156 1.156 28 C -0.007 4.007 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.168 0.832 33 H 0.144 0.856 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.142 0.858 41 H 0.152 0.848 42 H 0.151 0.849 43 H 0.123 0.877 44 H 0.105 0.895 45 H 0.100 0.900 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.076 7.056 -5.987 10.111 hybrid contribution 0.325 -2.221 -0.260 2.259 sum -3.751 4.835 -6.247 8.745 Atomic orbital electron populations 1.21776 0.94051 1.01210 1.02419 1.21489 0.95951 0.97744 0.86522 0.89406 1.59164 1.14369 1.24834 1.40023 1.22366 0.94399 1.00759 0.97863 0.92262 1.21506 1.01434 0.98798 0.92275 1.21891 0.94390 1.00985 0.99611 1.21595 0.96113 0.99556 0.83501 1.57540 1.67276 1.45604 1.12594 1.00896 0.73657 0.73358 0.71902 1.93422 1.64876 1.87169 1.54351 1.93489 1.79563 1.86535 1.38354 1.30501 1.22551 1.26630 1.07123 1.20712 0.95182 0.93725 0.93598 1.20995 1.02730 1.00786 1.01367 1.21304 0.95908 0.97339 0.93150 1.21505 1.02949 1.00955 0.98211 1.17298 0.86293 0.90422 0.91528 1.20188 1.44561 0.98362 0.89615 0.85722 1.26146 0.91178 1.01173 0.95224 1.69567 1.28735 1.40265 1.03220 0.86388 0.79280 0.81219 0.81114 1.20965 1.18384 1.15620 1.21636 0.95249 0.99030 0.84795 0.92161 0.90187 0.94545 0.83247 0.85632 0.90389 0.90163 0.88231 0.93491 0.89158 0.90446 0.85755 0.84797 0.84937 0.87702 0.89479 0.90001 0.90430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.20 71.98 0.66 -2.81 16 2 C 0.10 2.67 3.01 44.91 0.14 2.81 16 3 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 4 N -0.85 -29.14 9.12 -168.68 -1.54 -30.67 16 5 C -0.13 -3.94 1.67 -10.72 -0.02 -3.96 16 6 H 0.06 2.22 6.79 -2.39 -0.02 2.20 16 7 C -0.10 -2.33 4.93 30.62 0.15 -2.17 16 8 C -0.13 -3.11 6.08 30.67 0.19 -2.92 16 9 C 0.12 3.22 6.35 86.36 0.55 3.77 16 10 N -0.99 -34.72 3.26 -513.07 -1.67 -36.39 16 11 S 2.70 117.22 5.06 -56.49 -0.29 116.93 16 12 O -1.01 -44.71 16.03 -128.00 -2.05 -46.76 16 13 O -0.99 -49.43 14.94 -128.00 -1.91 -51.34 16 14 C -0.77 -34.69 5.98 22.73 0.14 -34.56 16 15 C -0.01 -0.51 9.53 22.22 0.21 -0.30 16 16 C -0.24 -8.82 10.05 22.46 0.23 -8.59 16 17 C -0.06 -2.22 10.02 22.22 0.22 -1.99 16 18 C -0.22 -9.38 6.79 22.73 0.15 -9.22 16 19 C 0.15 6.97 4.63 -21.29 -0.10 6.87 16 20 C -0.50 -24.04 7.19 23.46 0.17 -23.87 16 21 H 0.13 5.73 2.21 -2.91 -0.01 5.73 16 22 C 0.08 4.01 5.28 85.26 0.45 4.46 16 23 N -0.79 -36.87 13.20 21.83 0.29 -36.58 16 24 Si 0.90 39.40 26.72 68.60 1.83 41.24 16 25 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 26 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 27 H -0.23 -10.33 5.48 99.48 0.55 -9.78 16 28 C 0.12 3.95 4.04 86.36 0.35 4.30 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.08 1.61 6.50 -2.39 -0.02 1.60 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.35 13.89 8.25 -89.70 -0.74 13.15 16 33 H 0.33 11.71 7.32 -89.69 -0.66 11.05 16 34 H 0.08 1.58 6.47 -2.39 -0.02 1.56 16 35 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.08 2.18 7.40 -2.39 -0.02 2.16 16 40 H 0.12 4.64 7.33 -2.91 -0.02 4.62 16 41 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 42 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 43 H 0.10 4.43 6.97 -2.91 -0.02 4.41 16 44 H 0.29 12.71 8.30 -92.70 -0.77 11.94 16 45 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 46 H 0.08 3.13 4.03 -2.39 -0.01 3.12 16 Total: -1.00 -58.34 355.60 -2.39 -60.73 By element: Atomic # 1 Polarization: 51.58 SS G_CDS: -0.53 Total: 51.05 kcal Atomic # 6 Polarization: -71.69 SS G_CDS: 3.48 Total: -68.20 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -2.92 Total: -103.64 kcal Atomic # 8 Polarization: -94.13 SS G_CDS: -3.96 Total: -98.10 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 1.83 Total: 41.24 kcal Atomic # 16 Polarization: 117.22 SS G_CDS: -0.29 Total: 116.93 kcal Total: -58.34 -2.39 -60.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.082 kcal (2) G-P(sol) polarization free energy of solvation -58.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds