Wall clock time and date at job start Tue Mar 31 2020 20:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47431 * 2 1 4 4 N 1.46899 * 109.47112 * 120.00946 * 2 1 3 5 5 C 1.53009 * 109.46835 * 240.00143 * 2 1 3 6 6 H 1.09002 * 109.49354 * 60.06580 * 5 2 1 7 7 C 1.53038 * 109.49865 * 300.00158 * 5 2 1 8 8 C 1.53043 * 109.53747 * 178.64932 * 7 5 2 9 9 C 1.53191 * 109.31164 * 61.36560 * 8 7 5 10 10 N 1.46930 * 108.77539 * 305.36643 * 9 8 7 11 11 S 1.65599 * 120.62766 * 233.58450 * 10 9 8 12 12 O 1.42096 * 106.40364 * 344.54209 * 11 10 9 13 13 O 1.42104 * 106.39931 * 211.62045 * 11 10 9 14 14 C 1.76200 * 107.21663 * 98.08460 * 11 10 9 15 15 C 1.37635 * 120.12785 * 114.36197 * 14 11 10 16 16 C 1.38621 * 120.24722 * 179.97438 * 15 14 11 17 17 C 1.38658 * 120.50049 * 359.97438 * 16 15 14 18 18 C 1.37591 * 120.24815 * 359.97438 * 17 16 15 19 19 C 1.40697 * 120.12595 * 294.33876 * 14 11 10 20 20 C 1.41399 * 120.24660 * 0.02562 * 19 14 11 21 21 H 1.07994 * 119.99521 * 330.63142 * 20 19 14 22 22 C 1.39941 * 119.99864 * 150.63368 * 20 19 14 23 23 N 1.30816 * 120.00360 * 350.76466 * 22 20 19 24 24 Si 1.86799 * 119.99570 * 170.77171 * 22 20 19 25 25 H 1.48491 * 109.47403 * 59.99776 * 24 22 20 26 26 H 1.48508 * 109.47033 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47241 * 299.99235 * 24 22 20 28 28 C 1.46923 * 118.73830 * 53.86091 * 10 9 8 29 29 H 1.09001 * 109.47522 * 59.99176 * 1 2 3 30 30 H 1.08997 * 109.47769 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46813 * 299.99429 * 1 2 3 32 32 H 1.00900 * 110.99980 * 176.04546 * 4 2 1 33 33 H 1.00906 * 110.99799 * 299.99446 * 4 2 1 34 34 H 1.09006 * 109.45966 * 58.62844 * 7 5 2 35 35 H 1.09000 * 109.44988 * 298.66494 * 7 5 2 36 36 H 1.09002 * 109.49736 * 301.41454 * 8 7 5 37 37 H 1.08999 * 109.49659 * 181.32116 * 8 7 5 38 38 H 1.08999 * 109.58806 * 185.57830 * 9 8 7 39 39 H 1.08997 * 109.58352 * 65.15022 * 9 8 7 40 40 H 1.08001 * 119.88056 * 359.97438 * 15 14 11 41 41 H 1.08003 * 119.74492 * 180.02562 * 16 15 14 42 42 H 1.08004 * 119.87120 * 180.28133 * 17 16 15 43 43 H 1.07999 * 120.12837 * 179.97438 * 18 17 16 44 44 H 0.97003 * 120.00546 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.58965 * 65.92618 * 28 10 9 46 46 H 1.09005 * 109.58471 * 186.35583 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6927 1.1993 5 6 2.0399 -0.7213 -1.2494 6 1 1.6777 -0.2070 -2.1396 7 6 1.5301 -2.1642 -1.2500 8 6 2.0117 -2.8766 -2.5160 9 6 3.5433 -2.9050 -2.5298 10 7 4.0431 -1.5311 -2.3833 11 16 5.1175 -0.9032 -3.4758 12 8 5.6397 -2.0058 -4.2042 13 8 5.9346 0.0096 -2.7557 14 6 4.1907 0.0585 -4.6251 15 6 4.3689 1.4218 -4.6871 16 6 3.6415 2.1807 -5.5907 17 6 2.7279 1.5774 -6.4416 18 6 2.5342 0.2159 -6.3977 19 6 3.2660 -0.5644 -5.4832 20 6 3.0744 -1.9643 -5.4284 21 1 3.8868 -2.6090 -5.1272 22 6 1.8323 -2.5142 -5.7645 23 7 0.8004 -1.7326 -5.9533 24 14 1.6476 -4.3644 -5.9432 25 1 1.9959 -5.0231 -4.6588 26 1 0.2434 -4.6895 -6.3009 27 1 2.5564 -4.8517 -7.0118 28 6 3.5762 -0.7271 -1.2456 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.0262 -0.7628 1.1908 33 1 1.6962 -0.2352 2.0385 34 1 0.4403 -2.1643 -1.2255 35 1 1.9130 -2.6849 -0.3723 36 1 1.6498 -2.3421 -3.3943 37 1 1.6288 -3.8971 -2.5272 38 1 3.8926 -3.3221 -3.4743 39 1 3.9049 -3.5155 -1.7024 40 1 5.0782 1.9022 -4.0294 41 1 3.7881 3.2499 -5.6328 42 1 2.1699 2.1779 -7.1448 43 1 1.8218 -0.2519 -7.0610 44 1 -0.0606 -2.1138 -6.1867 45 1 3.9404 -1.1637 -0.3156 46 1 3.9470 0.2933 -1.3426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601337916.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:09 Heat of formation + Delta-G solvation = -64.073195 kcal Electronic energy + Delta-G solvation = -29990.250551 eV Core-core repulsion = 26198.741125 eV Total energy + Delta-G solvation = -3791.509426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -38.80955 -37.60153 -36.40011 -35.38834 -34.88329 -33.91805 -31.58483 -30.24931 -30.00880 -29.54651 -28.69176 -25.56943 -24.18364 -23.23408 -21.73825 -21.16061 -20.83417 -18.93218 -18.11373 -17.69314 -17.12778 -15.96164 -15.83123 -15.50358 -15.28038 -15.06214 -14.47482 -14.33310 -13.94199 -13.44435 -13.38432 -13.19164 -12.97744 -12.87349 -12.76973 -12.57448 -12.01902 -11.91643 -11.77514 -11.53244 -11.32199 -11.30968 -11.22179 -11.15219 -11.06327 -10.84026 -10.66704 -10.59868 -10.56136 -10.26415 -10.00866 -9.94286 -9.75401 -9.34001 -9.19634 -8.57821 -8.28983 -8.00962 -7.59701 -7.05042 -4.79308 1.50195 2.33310 2.71831 2.93635 2.98116 3.08731 3.73489 3.85540 4.37210 4.59089 4.73856 4.97761 5.00276 5.20891 5.28690 5.38771 5.51696 5.55565 5.64353 5.76892 5.85085 5.85707 5.97074 6.00698 6.02509 6.12911 6.22113 6.23993 6.28747 6.35277 6.37841 6.48697 6.66356 6.69682 6.74456 6.87110 6.97109 7.05375 7.13006 7.20682 7.31044 7.34423 7.48066 7.51007 7.69420 7.79980 7.93472 8.34254 8.50009 8.64803 9.86275 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009393 B = 0.006959 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.079460 B = 4022.332576 C = 4848.305282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.092 3.908 3 H 0.034 0.966 4 N -0.844 5.844 5 C -0.095 4.095 6 H 0.085 0.915 7 C -0.095 4.095 8 C -0.149 4.149 9 C 0.129 3.871 10 N -0.989 5.989 11 S 2.702 3.298 12 O -0.974 6.974 13 O -0.998 6.998 14 C -0.775 4.775 15 C -0.005 4.005 16 C -0.248 4.248 17 C -0.078 4.078 18 C -0.156 4.156 19 C 0.193 3.807 20 C -0.471 4.471 21 H 0.113 0.887 22 C 0.085 3.915 23 N -0.779 5.779 24 Si 0.898 3.102 25 H -0.250 1.250 26 H -0.275 1.275 27 H -0.259 1.259 28 C 0.135 3.865 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.340 0.660 33 H 0.335 0.665 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.097 0.903 39 H 0.053 0.947 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.126 0.874 44 H 0.287 0.713 45 H 0.063 0.937 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 -0.361 8.729 9.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 H 0.052 0.948 4 N -0.376 5.376 5 C -0.116 4.116 6 H 0.103 0.897 7 C -0.133 4.133 8 C -0.188 4.188 9 C 0.004 3.996 10 N -0.824 5.824 11 S 2.802 3.198 12 O -0.965 6.965 13 O -0.989 6.989 14 C -0.870 4.870 15 C -0.025 4.025 16 C -0.268 4.268 17 C -0.097 4.097 18 C -0.176 4.176 19 C 0.188 3.812 20 C -0.499 4.499 21 H 0.131 0.869 22 C -0.135 4.135 23 N -0.402 5.402 24 Si 0.721 3.279 25 H -0.174 1.174 26 H -0.200 1.200 27 H -0.183 1.183 28 C 0.008 3.992 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.066 0.934 32 H 0.155 0.845 33 H 0.147 0.853 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.116 0.884 39 H 0.071 0.929 40 H 0.124 0.876 41 H 0.112 0.888 42 H 0.111 0.889 43 H 0.144 0.856 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.710 -1.173 8.443 8.944 hybrid contribution -0.548 0.675 -0.312 0.924 sum -3.259 -0.498 8.131 8.774 Atomic orbital electron populations 1.21840 0.94640 1.02629 1.01127 1.21314 0.95469 0.94729 0.90453 0.94836 1.58825 1.16343 1.58495 1.03945 1.21663 0.95208 0.97576 0.97111 0.89709 1.21368 0.99678 0.94435 0.97794 1.22156 0.95797 1.00511 1.00330 1.21394 0.94598 0.81358 1.02231 1.57564 1.64021 1.21817 1.39036 1.01038 0.73061 0.72956 0.72788 1.93461 1.77748 1.53240 1.72026 1.93433 1.66355 1.65745 1.73332 1.29893 1.27618 1.06110 1.23350 1.20228 0.95014 0.92046 0.95220 1.20491 1.04504 0.97685 1.04146 1.20908 0.96338 0.95353 0.97127 1.21574 1.02766 0.92639 1.00604 1.16990 0.85825 0.92643 0.85727 1.20439 0.98117 0.92542 1.38805 0.86927 1.25912 0.95175 1.00973 0.91470 1.69777 1.01186 1.37807 1.31460 0.86518 0.78430 0.81855 0.81136 1.17411 1.20003 1.18298 1.21339 0.93988 0.94930 0.88895 0.92157 0.91467 0.93428 0.84530 0.85343 0.92545 0.91538 0.88369 0.92313 0.88448 0.92865 0.87646 0.88850 0.88942 0.85593 0.90224 0.91842 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.14 37.16 0.34 -1.35 16 2 C 0.09 1.13 3.19 -67.71 -0.22 0.92 16 3 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 4 N -0.84 -8.93 8.49 -4.67 -0.04 -8.97 16 5 C -0.10 -1.43 2.23 -90.27 -0.20 -1.63 16 6 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 7 C -0.10 -1.42 4.67 -26.69 -0.12 -1.54 16 8 C -0.15 -2.54 5.65 -26.61 -0.15 -2.69 16 9 C 0.13 2.29 5.46 -3.71 -0.02 2.27 16 10 N -0.99 -18.44 3.25 -113.27 -0.37 -18.81 16 11 S 2.70 59.53 5.05 -107.50 -0.54 58.99 16 12 O -0.97 -23.46 14.42 -57.17 -0.82 -24.28 16 13 O -1.00 -22.80 15.96 -57.17 -0.91 -23.71 16 14 C -0.77 -18.28 5.97 -38.87 -0.23 -18.52 16 15 C -0.01 -0.12 9.54 -39.66 -0.38 -0.49 16 16 C -0.25 -5.38 10.05 -39.28 -0.39 -5.77 16 17 C -0.08 -1.73 10.02 -39.66 -0.40 -2.13 16 18 C -0.16 -3.76 8.66 -38.87 -0.34 -4.10 16 19 C 0.19 4.75 5.55 -106.82 -0.59 4.15 16 20 C -0.47 -11.17 5.92 -37.74 -0.22 -11.39 16 21 H 0.11 2.71 3.78 -52.49 -0.20 2.51 16 22 C 0.09 1.88 3.57 -17.35 -0.06 1.82 16 23 N -0.78 -17.42 10.81 55.55 0.60 -16.82 16 24 Si 0.90 17.01 29.26 -169.99 -4.97 12.04 16 25 H -0.25 -4.48 7.11 56.52 0.40 -4.08 16 26 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 27 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 28 C 0.13 2.15 5.45 -3.49 -0.02 2.13 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.34 3.47 6.93 -39.29 -0.27 3.20 16 33 H 0.33 2.92 9.04 -39.29 -0.36 2.56 16 34 H 0.06 0.82 6.36 -51.93 -0.33 0.49 16 35 H 0.07 0.95 7.65 -51.93 -0.40 0.55 16 36 H 0.10 1.93 5.15 -51.93 -0.27 1.66 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 1.89 4.95 -51.93 -0.26 1.64 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.11 2.22 7.32 -52.49 -0.38 1.83 16 41 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 42 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 43 H 0.13 3.07 6.21 -52.49 -0.33 2.74 16 44 H 0.29 5.89 8.30 -40.82 -0.34 5.55 16 45 H 0.06 0.87 6.35 -51.93 -0.33 0.54 16 46 H 0.08 1.25 7.36 -51.93 -0.38 0.86 16 LS Contribution 354.39 15.07 5.34 5.34 Total: -1.00 -27.16 354.39 -11.08 -38.24 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: -6.35 Total: 16.31 kcal Atomic # 6 Polarization: -35.32 SS G_CDS: -3.01 Total: -38.32 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.19 Total: -44.60 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -1.74 Total: -47.99 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -4.97 Total: 12.04 kcal Atomic # 16 Polarization: 59.53 SS G_CDS: -0.54 Total: 58.99 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.16 -11.08 -38.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337916.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.835 kcal (2) G-P(sol) polarization free energy of solvation -27.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds