Wall clock time and date at job start Tue Mar 31 2020 20:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47431 * 2 1 4 4 N 1.46899 * 109.47112 * 120.00946 * 2 1 3 5 5 C 1.53009 * 109.46835 * 240.00143 * 2 1 3 6 6 H 1.09002 * 109.49354 * 60.06580 * 5 2 1 7 7 C 1.53038 * 109.49865 * 300.00158 * 5 2 1 8 8 C 1.53043 * 109.53747 * 178.64932 * 7 5 2 9 9 C 1.53191 * 109.31164 * 61.36560 * 8 7 5 10 10 N 1.46930 * 108.77539 * 305.36643 * 9 8 7 11 11 S 1.65599 * 120.62766 * 233.58450 * 10 9 8 12 12 O 1.42096 * 106.40364 * 344.54209 * 11 10 9 13 13 O 1.42104 * 106.39931 * 211.62045 * 11 10 9 14 14 C 1.76200 * 107.21663 * 98.08460 * 11 10 9 15 15 C 1.37635 * 120.12785 * 114.36197 * 14 11 10 16 16 C 1.38621 * 120.24722 * 179.97438 * 15 14 11 17 17 C 1.38658 * 120.50049 * 359.97438 * 16 15 14 18 18 C 1.37591 * 120.24815 * 359.97438 * 17 16 15 19 19 C 1.40697 * 120.12595 * 294.33876 * 14 11 10 20 20 C 1.41399 * 120.24660 * 0.02562 * 19 14 11 21 21 H 1.07994 * 119.99521 * 330.63142 * 20 19 14 22 22 C 1.39941 * 119.99864 * 150.63368 * 20 19 14 23 23 N 1.30816 * 120.00360 * 350.76466 * 22 20 19 24 24 Si 1.86799 * 119.99570 * 170.77171 * 22 20 19 25 25 H 1.48491 * 109.47403 * 59.99776 * 24 22 20 26 26 H 1.48508 * 109.47033 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.47241 * 299.99235 * 24 22 20 28 28 C 1.46923 * 118.73830 * 53.86091 * 10 9 8 29 29 H 1.09001 * 109.47522 * 59.99176 * 1 2 3 30 30 H 1.08997 * 109.47769 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46813 * 299.99429 * 1 2 3 32 32 H 1.00900 * 110.99980 * 176.04546 * 4 2 1 33 33 H 1.00906 * 110.99799 * 299.99446 * 4 2 1 34 34 H 1.09006 * 109.45966 * 58.62844 * 7 5 2 35 35 H 1.09000 * 109.44988 * 298.66494 * 7 5 2 36 36 H 1.09002 * 109.49736 * 301.41454 * 8 7 5 37 37 H 1.08999 * 109.49659 * 181.32116 * 8 7 5 38 38 H 1.08999 * 109.58806 * 185.57830 * 9 8 7 39 39 H 1.08997 * 109.58352 * 65.15022 * 9 8 7 40 40 H 1.08001 * 119.88056 * 359.97438 * 15 14 11 41 41 H 1.08003 * 119.74492 * 180.02562 * 16 15 14 42 42 H 1.08004 * 119.87120 * 180.28133 * 17 16 15 43 43 H 1.07999 * 120.12837 * 179.97438 * 18 17 16 44 44 H 0.97003 * 120.00546 * 179.97438 * 23 22 20 45 45 H 1.09000 * 109.58965 * 65.92618 * 28 10 9 46 46 H 1.09005 * 109.58471 * 186.35583 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6927 1.1993 5 6 2.0399 -0.7213 -1.2494 6 1 1.6777 -0.2070 -2.1396 7 6 1.5301 -2.1642 -1.2500 8 6 2.0117 -2.8766 -2.5160 9 6 3.5433 -2.9050 -2.5298 10 7 4.0431 -1.5311 -2.3833 11 16 5.1175 -0.9032 -3.4758 12 8 5.6397 -2.0058 -4.2042 13 8 5.9346 0.0096 -2.7557 14 6 4.1907 0.0585 -4.6251 15 6 4.3689 1.4218 -4.6871 16 6 3.6415 2.1807 -5.5907 17 6 2.7279 1.5774 -6.4416 18 6 2.5342 0.2159 -6.3977 19 6 3.2660 -0.5644 -5.4832 20 6 3.0744 -1.9643 -5.4284 21 1 3.8868 -2.6090 -5.1272 22 6 1.8323 -2.5142 -5.7645 23 7 0.8004 -1.7326 -5.9533 24 14 1.6476 -4.3644 -5.9432 25 1 1.9959 -5.0231 -4.6588 26 1 0.2434 -4.6895 -6.3009 27 1 2.5564 -4.8517 -7.0118 28 6 3.5762 -0.7271 -1.2456 29 1 -0.3634 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 3.0262 -0.7628 1.1908 33 1 1.6962 -0.2352 2.0385 34 1 0.4403 -2.1643 -1.2255 35 1 1.9130 -2.6849 -0.3723 36 1 1.6498 -2.3421 -3.3943 37 1 1.6288 -3.8971 -2.5272 38 1 3.8926 -3.3221 -3.4743 39 1 3.9049 -3.5155 -1.7024 40 1 5.0782 1.9022 -4.0294 41 1 3.7881 3.2499 -5.6328 42 1 2.1699 2.1779 -7.1448 43 1 1.8218 -0.2519 -7.0610 44 1 -0.0606 -2.1138 -6.1867 45 1 3.9404 -1.1637 -0.3156 46 1 3.9470 0.2933 -1.3426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601337916.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:08 Heat of formation + Delta-G solvation = -81.456495 kcal Electronic energy + Delta-G solvation = -29991.004347 eV Core-core repulsion = 26198.741125 eV Total energy + Delta-G solvation = -3792.263222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.05741 -39.33613 -38.17901 -36.73111 -36.54571 -35.62205 -32.90484 -31.99353 -31.35085 -31.16348 -29.67086 -27.31493 -25.50124 -24.47507 -23.46292 -22.90224 -22.13796 -20.12842 -19.72862 -19.42176 -18.74740 -17.68310 -17.19415 -16.98117 -16.54570 -16.25076 -16.05343 -15.66877 -15.45096 -15.12261 -14.97274 -14.51509 -14.43998 -14.32437 -14.13567 -13.93182 -13.76048 -13.18064 -13.05152 -13.03367 -12.95694 -12.90803 -12.79769 -12.77523 -12.53167 -12.33826 -12.13698 -12.09012 -11.93500 -11.67049 -11.56503 -11.27606 -11.16023 -10.94132 -10.91338 -9.85811 -9.64506 -9.45415 -9.38600 -8.73902 -6.57413 -0.18744 0.56027 0.99914 1.38780 1.46751 1.50755 2.16325 2.26220 2.65629 3.00682 3.51212 3.64534 3.69857 3.80022 3.95901 4.04114 4.24687 4.31819 4.36832 4.39431 4.50327 4.54654 4.64174 4.68139 4.71981 4.75778 4.91228 4.96400 5.02057 5.06421 5.09175 5.16633 5.22573 5.28090 5.32240 5.42500 5.49819 5.54698 5.57305 5.71825 5.80029 5.86546 5.92546 6.02384 6.16963 6.34729 6.55258 6.73157 6.74548 6.86832 8.19738 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009393 B = 0.006959 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.079460 B = 4022.332576 C = 4848.305282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.099 3.901 3 H 0.034 0.966 4 N -0.841 5.841 5 C -0.090 4.090 6 H 0.050 0.950 7 C -0.086 4.086 8 C -0.149 4.149 9 C 0.124 3.876 10 N -0.985 5.985 11 S 2.715 3.285 12 O -1.000 7.000 13 O -1.009 7.009 14 C -0.795 4.795 15 C -0.019 4.019 16 C -0.252 4.252 17 C -0.079 4.079 18 C -0.183 4.183 19 C 0.168 3.832 20 C -0.484 4.484 21 H 0.105 0.895 22 C 0.065 3.935 23 N -0.795 5.795 24 Si 0.939 3.061 25 H -0.232 1.232 26 H -0.263 1.263 27 H -0.268 1.268 28 C 0.128 3.872 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.344 0.656 33 H 0.349 0.651 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.119 0.881 43 H 0.116 0.884 44 H 0.294 0.706 45 H 0.093 0.907 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.748 -0.800 10.626 11.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.013 4.013 3 H 0.052 0.948 4 N -0.375 5.375 5 C -0.110 4.110 6 H 0.068 0.932 7 C -0.124 4.124 8 C -0.188 4.188 9 C -0.001 4.001 10 N -0.822 5.822 11 S 2.813 3.187 12 O -0.990 6.990 13 O -1.000 7.000 14 C -0.889 4.889 15 C -0.038 4.038 16 C -0.272 4.272 17 C -0.098 4.098 18 C -0.203 4.203 19 C 0.164 3.836 20 C -0.512 4.512 21 H 0.122 0.878 22 C -0.154 4.154 23 N -0.419 5.419 24 Si 0.759 3.241 25 H -0.155 1.155 26 H -0.187 1.187 27 H -0.193 1.193 28 C 0.003 3.997 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.135 0.865 41 H 0.141 0.859 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.105 0.895 45 H 0.111 0.889 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.492 -1.584 10.346 11.033 hybrid contribution -0.321 0.862 -0.888 1.279 sum -3.813 -0.722 9.457 10.223 Atomic orbital electron populations 1.21803 0.94077 1.02538 1.01518 1.21167 0.95842 0.94409 0.89906 0.94829 1.58761 1.16643 1.58283 1.03791 1.21553 0.94464 0.97791 0.97217 0.93183 1.21305 0.99906 0.94007 0.97146 1.22122 0.95210 1.01200 1.00220 1.21541 0.95174 0.80940 1.02443 1.57340 1.63704 1.22381 1.38800 1.00528 0.73207 0.72310 0.72649 1.93417 1.78682 1.53950 1.72992 1.93404 1.67087 1.66135 1.73378 1.30192 1.27687 1.06914 1.24085 1.20522 0.95498 0.92054 0.95764 1.20846 1.03794 0.99209 1.03344 1.21223 0.96240 0.94925 0.97381 1.21622 1.03631 0.93754 1.01250 1.17277 0.86573 0.93423 0.86343 1.20467 0.98663 0.92291 1.39772 0.87767 1.26410 0.94345 1.04088 0.90605 1.69797 1.01652 1.39316 1.31129 0.85898 0.78757 0.77894 0.81576 1.15491 1.18656 1.19304 1.21613 0.94665 0.94531 0.88887 0.93341 0.91755 0.91508 0.84117 0.83753 0.92122 0.90030 0.91268 0.90871 0.90456 0.89860 0.86513 0.85867 0.86293 0.86571 0.89482 0.88913 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.14 71.98 0.66 -2.38 16 2 C 0.10 2.24 3.19 44.92 0.14 2.38 16 3 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 4 N -0.84 -15.21 8.49 -168.68 -1.43 -16.64 16 5 C -0.09 -2.61 2.23 -10.57 -0.02 -2.63 16 6 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 7 C -0.09 -2.41 4.67 30.62 0.14 -2.26 16 8 C -0.15 -4.89 5.65 30.67 0.17 -4.71 16 9 C 0.12 4.27 5.46 86.36 0.47 4.74 16 10 N -0.98 -36.31 3.25 -512.29 -1.67 -37.98 16 11 S 2.71 121.13 5.05 -56.49 -0.29 120.85 16 12 O -1.00 -49.22 14.42 -128.00 -1.85 -51.07 16 13 O -1.01 -46.19 15.96 -128.00 -2.04 -48.23 16 14 C -0.79 -38.36 5.97 22.73 0.14 -38.22 16 15 C -0.02 -0.85 9.54 22.22 0.21 -0.64 16 16 C -0.25 -10.77 10.05 22.46 0.23 -10.54 16 17 C -0.08 -3.49 10.02 22.22 0.22 -3.26 16 18 C -0.18 -9.03 8.66 22.73 0.20 -8.83 16 19 C 0.17 8.53 5.55 -21.29 -0.12 8.41 16 20 C -0.48 -23.57 5.92 23.46 0.14 -23.43 16 21 H 0.10 5.18 3.78 -2.91 -0.01 5.17 16 22 C 0.07 2.90 3.57 85.26 0.30 3.21 16 23 N -0.80 -36.13 10.81 21.82 0.24 -35.89 16 24 Si 0.94 34.31 29.26 68.60 2.01 36.32 16 25 H -0.23 -7.74 7.11 99.48 0.71 -7.03 16 26 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 27 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 28 C 0.13 3.93 5.45 86.51 0.47 4.40 16 29 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.42 6.40 -2.39 -0.02 1.40 16 31 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.34 5.89 6.93 -89.69 -0.62 5.27 16 33 H 0.35 4.91 9.04 -89.69 -0.81 4.10 16 34 H 0.06 1.65 6.36 -2.38 -0.02 1.64 16 35 H 0.08 2.06 7.65 -2.39 -0.02 2.04 16 36 H 0.07 2.73 5.15 -2.39 -0.01 2.71 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.08 3.01 4.95 -2.39 -0.01 2.99 16 39 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.12 4.91 7.32 -2.91 -0.02 4.89 16 41 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 42 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 43 H 0.12 5.84 6.21 -2.91 -0.02 5.82 16 44 H 0.29 12.14 8.30 -92.71 -0.77 11.37 16 45 H 0.09 2.31 6.35 -2.39 -0.02 2.29 16 46 H 0.07 2.23 7.36 -2.38 -0.02 2.22 16 Total: -1.00 -59.07 354.39 -2.07 -61.14 By element: Atomic # 1 Polarization: 45.67 SS G_CDS: -0.40 Total: 45.27 kcal Atomic # 6 Polarization: -77.12 SS G_CDS: 3.35 Total: -73.77 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -2.86 Total: -90.51 kcal Atomic # 8 Polarization: -95.41 SS G_CDS: -3.89 Total: -99.30 kcal Atomic # 14 Polarization: 34.31 SS G_CDS: 2.01 Total: 36.32 kcal Atomic # 16 Polarization: 121.13 SS G_CDS: -0.29 Total: 120.85 kcal Total: -59.07 -2.07 -61.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601337916.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.314 kcal (2) G-P(sol) polarization free energy of solvation -59.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds