Wall clock time and date at job start Tue Mar 31 2020 21:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.47060 * 2 1 4 4 C 1.46193 * 111.00116 * 208.13683 * 3 2 1 5 5 C 1.51269 * 109.10034 * 144.77081 * 4 3 2 6 6 C 1.53798 * 109.63242 * 92.40866 * 5 4 3 7 7 N 1.47610 * 111.29943 * 319.95850 * 6 5 4 8 8 S 1.65604 * 118.74658 * 138.34353 * 7 6 5 9 9 O 1.42103 * 106.40139 * 210.88492 * 8 7 6 10 10 O 1.42094 * 106.40195 * 343.79966 * 8 7 6 11 11 C 1.76197 * 107.22130 * 97.34299 * 8 7 6 12 12 C 1.37634 * 120.13085 * 114.66840 * 11 8 7 13 13 C 1.38615 * 120.25339 * 179.97438 * 12 11 8 14 14 C 1.38658 * 120.49657 * 0.02562 * 13 12 11 15 15 C 1.37595 * 120.25038 * 0.02802 * 14 13 12 16 16 C 1.40706 * 120.12504 * 294.39931 * 11 8 7 17 17 C 1.41395 * 120.24441 * 359.97438 * 16 11 8 18 18 H 1.07997 * 119.99927 * 325.59727 * 17 16 11 19 19 C 1.39936 * 120.00099 * 145.60004 * 17 16 11 20 20 N 1.30825 * 120.00006 * 356.55874 * 19 17 16 21 21 Si 1.86797 * 120.00274 * 176.55559 * 19 17 16 22 22 H 1.48498 * 109.46934 * 59.99943 * 21 19 17 23 23 H 1.48499 * 109.47372 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47013 * 300.00208 * 21 19 17 25 25 C 1.44884 * 122.50826 * 318.31520 * 7 6 5 26 26 C 1.41440 * 110.99850 * 77.09764 * 3 2 1 27 27 H 1.09000 * 109.47455 * 61.39506 * 1 2 3 28 28 H 1.09005 * 109.46896 * 181.39497 * 1 2 3 29 29 H 1.08996 * 109.47105 * 301.39355 * 1 2 3 30 30 H 1.09006 * 109.46840 * 240.00384 * 2 1 3 31 31 H 1.09002 * 109.47297 * 120.00248 * 2 1 3 32 32 H 1.09005 * 109.52966 * 264.65603 * 4 3 2 33 33 H 1.08994 * 109.53530 * 24.80285 * 4 3 2 34 34 H 1.09002 * 109.44484 * 212.45754 * 5 4 3 35 35 H 1.09000 * 109.44625 * 332.38907 * 5 4 3 36 36 H 1.09003 * 109.11719 * 80.42694 * 6 5 4 37 37 H 1.09001 * 109.11394 * 199.54856 * 6 5 4 38 38 H 1.08004 * 119.87564 * 0.02562 * 12 11 8 39 39 H 1.07994 * 119.75167 * 180.02562 * 13 12 11 40 40 H 1.07996 * 119.87432 * 179.97438 * 14 13 12 41 41 H 1.07997 * 120.12850 * 179.97438 * 15 14 13 42 42 H 0.97007 * 120.00252 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.43496 * 329.66263 * 25 7 6 44 44 H 1.08999 * 109.43798 * 209.79564 * 25 7 6 45 45 H 1.09003 * 109.38518 * 311.84275 * 26 3 2 46 46 H 1.09001 * 109.38612 * 71.52756 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3290 1.4778 -0.6436 5 6 3.4212 2.7896 -1.3913 6 6 4.0457 3.8604 -0.4811 7 7 3.5425 3.7483 0.9021 8 16 4.6103 3.9275 2.1551 9 8 4.1271 3.1121 3.2138 10 8 5.9099 3.7880 1.5978 11 6 4.4845 5.5939 2.7134 12 6 4.0100 5.8654 3.9765 13 6 3.9104 7.1755 4.4185 14 6 4.2863 8.2262 3.5956 15 6 4.7624 7.9784 2.3287 16 6 4.8742 6.6520 1.8717 17 6 5.3690 6.3849 0.5744 18 1 5.9592 5.4988 0.3935 19 6 5.0940 7.2687 -0.4751 20 7 4.3235 8.3062 -0.2717 21 14 5.8271 6.9672 -2.1665 22 1 5.3687 5.6503 -2.6771 23 1 5.3869 8.0392 -3.0951 24 1 7.3091 6.9728 -2.0718 25 6 2.1498 3.4881 1.2052 26 6 1.9106 1.9612 1.2871 27 1 -0.3634 0.4920 -0.9022 28 1 -0.3633 -1.0274 0.0250 29 1 -0.3633 0.5353 0.8772 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 4.1114 1.4345 0.1141 33 1 3.4515 0.6497 -1.3416 34 1 4.0425 2.6593 -2.2774 35 1 2.4226 3.1069 -1.6918 36 1 5.1289 3.7385 -0.4777 37 1 3.7991 4.8481 -0.8707 38 1 3.7147 5.0547 4.6261 39 1 3.5374 7.3792 5.4113 40 1 4.2042 9.2431 3.9501 41 1 5.0542 8.7984 1.6892 42 1 4.1325 8.9187 -0.9993 43 1 1.5226 3.9119 0.4209 44 1 1.8946 3.9470 2.1604 45 1 0.9136 1.7720 1.6849 46 1 2.6530 1.5136 1.9479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601338963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:31 Heat of formation + Delta-G solvation = -45.409146 kcal Electronic energy + Delta-G solvation = -29518.478952 eV Core-core repulsion = 25727.778860 eV Total energy + Delta-G solvation = -3790.700092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.06730 -37.61001 -36.40347 -35.37921 -34.87179 -33.84501 -32.40962 -30.75879 -30.20044 -29.56850 -26.90594 -25.85589 -25.22584 -22.57118 -21.66860 -21.16963 -20.82518 -20.26123 -18.04080 -17.59486 -17.08235 -16.16707 -15.89550 -15.55663 -15.39647 -15.16200 -14.49618 -14.39486 -14.19696 -13.65606 -13.40225 -13.17203 -13.01864 -12.83308 -12.73815 -12.35274 -12.06210 -11.99074 -11.74440 -11.71658 -11.47492 -11.31945 -11.27873 -11.19455 -11.16148 -11.13325 -10.77719 -10.61297 -10.57367 -10.54544 -10.35756 -10.14017 -9.90198 -9.48284 -9.21504 -8.31610 -8.03949 -7.99367 -7.54651 -6.99042 -4.79084 1.50800 2.32070 2.72428 2.95585 2.99443 3.07940 3.76453 3.85240 4.01931 4.40829 4.71802 4.97102 5.05268 5.17729 5.24950 5.28932 5.43651 5.45273 5.49814 5.51602 5.68122 5.77390 5.79340 5.84816 5.90780 5.97625 6.01935 6.05485 6.19252 6.22470 6.25699 6.34825 6.37097 6.48134 6.61300 6.72292 6.81028 6.97864 7.05559 7.27078 7.32894 7.40355 7.50669 7.59072 7.71515 7.78936 7.94164 8.35962 8.54033 8.65047 9.93745 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.005721 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.437414 B = 4892.659633 C = 6292.762590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 N -0.561 5.561 4 C 0.075 3.925 5 C -0.128 4.128 6 C 0.120 3.880 7 N -0.985 5.985 8 S 2.699 3.301 9 O -0.996 6.996 10 O -0.976 6.976 11 C -0.771 4.771 12 C -0.008 4.008 13 C -0.244 4.244 14 C -0.079 4.079 15 C -0.152 4.152 16 C 0.194 3.806 17 C -0.479 4.479 18 H 0.113 0.887 19 C 0.081 3.919 20 N -0.788 5.788 21 Si 0.905 3.095 22 H -0.253 1.253 23 H -0.276 1.276 24 H -0.259 1.259 25 C 0.135 3.865 26 C 0.052 3.948 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.033 0.967 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.126 0.874 42 H 0.286 0.714 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.523 -8.548 -3.789 10.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.071 4.071 3 N -0.286 5.286 4 C -0.052 4.052 5 C -0.168 4.168 6 C -0.005 4.005 7 N -0.821 5.821 8 S 2.798 3.202 9 O -0.986 6.986 10 O -0.967 6.967 11 C -0.865 4.865 12 C -0.028 4.028 13 C -0.264 4.264 14 C -0.098 4.098 15 C -0.172 4.172 16 C 0.189 3.811 17 C -0.508 4.508 18 H 0.131 0.869 19 C -0.139 4.139 20 N -0.412 5.412 21 Si 0.729 3.271 22 H -0.177 1.177 23 H -0.201 1.201 24 H -0.183 1.183 25 C 0.008 3.992 26 C -0.079 4.079 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.144 0.856 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.363 -8.766 -3.885 10.986 hybrid contribution 0.371 0.547 -0.148 0.678 sum -4.992 -8.219 -4.033 10.427 Atomic orbital electron populations 1.21796 0.95285 1.00829 1.02482 1.22080 0.95958 0.88652 1.00455 1.58332 1.27519 1.17938 1.24789 1.21542 0.88712 0.97763 0.97186 1.21875 1.02187 0.94893 0.97860 1.21866 0.99191 0.99091 0.80304 1.57051 1.19235 1.86750 1.19016 1.01169 0.72783 0.74492 0.71792 1.93438 1.81674 1.68009 1.55508 1.93447 1.37564 1.87346 1.78308 1.29966 1.28656 1.21292 1.06628 1.20259 0.92989 0.96279 0.93289 1.20530 1.13065 0.92986 0.99819 1.20943 0.97159 0.96963 0.94756 1.21590 1.03440 0.97802 0.94368 1.17046 0.83538 0.90267 0.90249 1.20399 1.28808 1.09149 0.92403 0.86945 1.25955 0.92851 0.93305 1.01799 1.69764 1.26379 1.10340 1.34678 0.86393 0.80954 0.79758 0.80043 1.17652 1.20121 1.18311 1.21150 0.82608 0.93835 1.01599 1.21863 1.01339 0.96067 0.88630 0.92100 0.92889 0.92644 0.91358 0.94892 0.94272 0.91566 0.90958 0.90397 0.89110 0.90729 0.87463 0.88674 0.88783 0.85647 0.90333 0.89896 0.90416 0.90211 0.94519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 10.04 37.16 0.37 -1.03 16 2 C 0.06 0.62 5.77 -3.82 -0.02 0.60 16 3 N -0.56 -7.54 3.77 -239.49 -0.90 -8.44 16 4 C 0.08 1.04 5.32 -5.08 -0.03 1.01 16 5 C -0.13 -1.82 5.78 -27.19 -0.16 -1.98 16 6 C 0.12 2.13 4.69 -3.02 -0.01 2.12 16 7 N -0.99 -18.47 2.46 -113.22 -0.28 -18.75 16 8 S 2.70 59.57 4.96 -107.50 -0.53 59.03 16 9 O -1.00 -22.51 15.33 -57.18 -0.88 -23.39 16 10 O -0.98 -23.50 14.00 -57.18 -0.80 -24.30 16 11 C -0.77 -18.47 5.97 -38.87 -0.23 -18.70 16 12 C -0.01 -0.19 9.53 -39.66 -0.38 -0.57 16 13 C -0.24 -5.33 10.05 -39.29 -0.39 -5.73 16 14 C -0.08 -1.78 10.02 -39.66 -0.40 -2.18 16 15 C -0.15 -3.75 8.63 -38.87 -0.34 -4.09 16 16 C 0.19 4.89 5.52 -106.82 -0.59 4.30 16 17 C -0.48 -11.68 6.22 -37.75 -0.23 -11.92 16 18 H 0.11 2.76 4.55 -52.49 -0.24 2.52 16 19 C 0.08 1.84 4.98 -17.34 -0.09 1.76 16 20 N -0.79 -18.45 10.86 55.55 0.60 -17.84 16 21 Si 0.91 17.22 29.13 -169.99 -4.95 12.27 16 22 H -0.25 -4.48 7.11 56.52 0.40 -4.08 16 23 H -0.28 -5.12 7.11 56.52 0.40 -4.71 16 24 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 25 C 0.14 2.22 5.38 -3.97 -0.02 2.19 16 26 C 0.05 0.76 5.15 -5.74 -0.03 0.73 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.55 6.76 -51.93 -0.35 0.20 16 30 H 0.07 0.68 7.28 -51.93 -0.38 0.30 16 31 H 0.03 0.38 7.96 -51.93 -0.41 -0.04 16 32 H 0.04 0.62 7.32 -51.93 -0.38 0.24 16 33 H 0.07 0.77 7.21 -51.93 -0.37 0.40 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.09 7.98 -51.93 -0.41 0.67 16 36 H 0.09 1.71 5.95 -51.93 -0.31 1.40 16 37 H 0.07 1.39 6.65 -51.93 -0.35 1.05 16 38 H 0.11 2.26 7.32 -52.48 -0.38 1.87 16 39 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.13 3.13 6.38 -52.49 -0.33 2.79 16 42 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 43 H 0.08 1.27 8.11 -51.93 -0.42 0.85 16 44 H 0.08 1.28 7.84 -51.93 -0.41 0.87 16 45 H 0.08 1.03 6.53 -51.93 -0.34 0.69 16 46 H 0.04 0.62 7.29 -51.93 -0.38 0.24 16 LS Contribution 358.83 15.07 5.41 5.41 Total: -1.00 -27.99 358.83 -11.60 -39.59 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -6.72 Total: 9.88 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: -2.55 Total: -33.47 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.58 Total: -45.03 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -1.68 Total: -47.68 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -4.95 Total: 12.27 kcal Atomic # 16 Polarization: 59.57 SS G_CDS: -0.53 Total: 59.03 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.99 -11.60 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601338963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.820 kcal (2) G-P(sol) polarization free energy of solvation -27.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds