Wall clock time and date at job start Tue Mar 31 2020 21:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46903 * 109.47060 * 2 1 4 4 C 1.46193 * 111.00116 * 208.13683 * 3 2 1 5 5 C 1.51269 * 109.10034 * 144.77081 * 4 3 2 6 6 C 1.53798 * 109.63242 * 92.40866 * 5 4 3 7 7 N 1.47610 * 111.29943 * 319.95850 * 6 5 4 8 8 S 1.65604 * 118.74658 * 138.34353 * 7 6 5 9 9 O 1.42103 * 106.40139 * 210.88492 * 8 7 6 10 10 O 1.42094 * 106.40195 * 343.79966 * 8 7 6 11 11 C 1.76197 * 107.22130 * 97.34299 * 8 7 6 12 12 C 1.37634 * 120.13085 * 114.66840 * 11 8 7 13 13 C 1.38615 * 120.25339 * 179.97438 * 12 11 8 14 14 C 1.38658 * 120.49657 * 0.02562 * 13 12 11 15 15 C 1.37595 * 120.25038 * 0.02802 * 14 13 12 16 16 C 1.40706 * 120.12504 * 294.39931 * 11 8 7 17 17 C 1.41395 * 120.24441 * 359.97438 * 16 11 8 18 18 H 1.07997 * 119.99927 * 325.59727 * 17 16 11 19 19 C 1.39936 * 120.00099 * 145.60004 * 17 16 11 20 20 N 1.30825 * 120.00006 * 356.55874 * 19 17 16 21 21 Si 1.86797 * 120.00274 * 176.55559 * 19 17 16 22 22 H 1.48498 * 109.46934 * 59.99943 * 21 19 17 23 23 H 1.48499 * 109.47372 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47013 * 300.00208 * 21 19 17 25 25 C 1.44884 * 122.50826 * 318.31520 * 7 6 5 26 26 C 1.41440 * 110.99850 * 77.09764 * 3 2 1 27 27 H 1.09000 * 109.47455 * 61.39506 * 1 2 3 28 28 H 1.09005 * 109.46896 * 181.39497 * 1 2 3 29 29 H 1.08996 * 109.47105 * 301.39355 * 1 2 3 30 30 H 1.09006 * 109.46840 * 240.00384 * 2 1 3 31 31 H 1.09002 * 109.47297 * 120.00248 * 2 1 3 32 32 H 1.09005 * 109.52966 * 264.65603 * 4 3 2 33 33 H 1.08994 * 109.53530 * 24.80285 * 4 3 2 34 34 H 1.09002 * 109.44484 * 212.45754 * 5 4 3 35 35 H 1.09000 * 109.44625 * 332.38907 * 5 4 3 36 36 H 1.09003 * 109.11719 * 80.42694 * 6 5 4 37 37 H 1.09001 * 109.11394 * 199.54856 * 6 5 4 38 38 H 1.08004 * 119.87564 * 0.02562 * 12 11 8 39 39 H 1.07994 * 119.75167 * 180.02562 * 13 12 11 40 40 H 1.07996 * 119.87432 * 179.97438 * 14 13 12 41 41 H 1.07997 * 120.12850 * 179.97438 * 15 14 13 42 42 H 0.97007 * 120.00252 * 180.02562 * 20 19 17 43 43 H 1.09000 * 109.43496 * 329.66263 * 25 7 6 44 44 H 1.08999 * 109.43798 * 209.79564 * 25 7 6 45 45 H 1.09003 * 109.38518 * 311.84275 * 26 3 2 46 46 H 1.09001 * 109.38612 * 71.52756 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3290 1.4778 -0.6436 5 6 3.4212 2.7896 -1.3913 6 6 4.0457 3.8604 -0.4811 7 7 3.5425 3.7483 0.9021 8 16 4.6103 3.9275 2.1551 9 8 4.1271 3.1121 3.2138 10 8 5.9099 3.7880 1.5978 11 6 4.4845 5.5939 2.7134 12 6 4.0100 5.8654 3.9765 13 6 3.9104 7.1755 4.4185 14 6 4.2863 8.2262 3.5956 15 6 4.7624 7.9784 2.3287 16 6 4.8742 6.6520 1.8717 17 6 5.3690 6.3849 0.5744 18 1 5.9592 5.4988 0.3935 19 6 5.0940 7.2687 -0.4751 20 7 4.3235 8.3062 -0.2717 21 14 5.8271 6.9672 -2.1665 22 1 5.3687 5.6503 -2.6771 23 1 5.3869 8.0392 -3.0951 24 1 7.3091 6.9728 -2.0718 25 6 2.1498 3.4881 1.2052 26 6 1.9106 1.9612 1.2871 27 1 -0.3634 0.4920 -0.9022 28 1 -0.3633 -1.0274 0.0250 29 1 -0.3633 0.5353 0.8772 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8900 32 1 4.1114 1.4345 0.1141 33 1 3.4515 0.6497 -1.3416 34 1 4.0425 2.6593 -2.2774 35 1 2.4226 3.1069 -1.6918 36 1 5.1289 3.7385 -0.4777 37 1 3.7991 4.8481 -0.8707 38 1 3.7147 5.0547 4.6261 39 1 3.5374 7.3792 5.4113 40 1 4.2042 9.2431 3.9501 41 1 5.0542 8.7984 1.6892 42 1 4.1325 8.9187 -0.9993 43 1 1.5226 3.9119 0.4209 44 1 1.8946 3.9470 2.1604 45 1 0.9136 1.7720 1.6849 46 1 2.6530 1.5136 1.9479 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601338963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:31 Heat of formation + Delta-G solvation = -62.012418 kcal Electronic energy + Delta-G solvation = -29519.198924 eV Core-core repulsion = 25727.778860 eV Total energy + Delta-G solvation = -3791.420064 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.22716 -39.39404 -38.19595 -36.74744 -36.58366 -35.59810 -33.62929 -32.04547 -31.68461 -31.36635 -28.09990 -27.47109 -26.65390 -23.61929 -23.44478 -22.92175 -22.07923 -21.42899 -19.72557 -19.33059 -18.66387 -17.83513 -17.34289 -17.05264 -16.72880 -16.33677 -16.05746 -15.97826 -15.50267 -15.17044 -14.92957 -14.75013 -14.43960 -14.23923 -13.94445 -13.78493 -13.60175 -13.30670 -13.09415 -13.06602 -12.98441 -12.97632 -12.91114 -12.78614 -12.60659 -12.39330 -12.24838 -12.13781 -11.95790 -11.68020 -11.65985 -11.55996 -11.44569 -11.19231 -10.98218 -9.89057 -9.72226 -9.37246 -9.09715 -8.72039 -6.62181 -0.19900 0.51445 0.97279 1.39569 1.49643 1.51022 2.18272 2.24450 2.65460 2.95307 2.99859 3.46964 3.66227 3.84567 4.01334 4.09727 4.21413 4.24184 4.29644 4.41871 4.48753 4.50361 4.59252 4.65606 4.69147 4.69707 4.75879 4.83590 4.94210 4.99589 5.05275 5.11857 5.17928 5.18931 5.23187 5.26278 5.31900 5.40347 5.49597 5.53601 5.68669 5.86214 5.95199 5.98227 6.13992 6.32622 6.47471 6.52692 6.74313 6.83290 8.22906 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011966 B = 0.005721 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.437414 B = 4892.659633 C = 6292.762590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 N -0.561 5.561 4 C 0.073 3.927 5 C -0.119 4.119 6 C 0.116 3.884 7 N -0.978 5.978 8 S 2.710 3.290 9 O -1.005 7.005 10 O -1.002 7.002 11 C -0.791 4.791 12 C -0.022 4.022 13 C -0.245 4.245 14 C -0.079 4.079 15 C -0.180 4.180 16 C 0.166 3.834 17 C -0.496 4.496 18 H 0.104 0.896 19 C 0.052 3.948 20 N -0.810 5.810 21 Si 0.954 3.046 22 H -0.232 1.232 23 H -0.264 1.264 24 H -0.265 1.265 25 C 0.128 3.872 26 C 0.060 3.940 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.028 0.972 32 H 0.013 0.987 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.115 0.885 42 H 0.293 0.707 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.892 -9.566 -5.034 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.074 4.074 3 N -0.286 5.286 4 C -0.055 4.055 5 C -0.159 4.159 6 C -0.008 4.008 7 N -0.816 5.816 8 S 2.808 3.192 9 O -0.996 6.996 10 O -0.992 6.992 11 C -0.884 4.884 12 C -0.042 4.042 13 C -0.265 4.265 14 C -0.097 4.097 15 C -0.200 4.200 16 C 0.162 3.838 17 C -0.525 4.525 18 H 0.121 0.879 19 C -0.166 4.166 20 N -0.435 5.435 21 Si 0.773 3.227 22 H -0.154 1.154 23 H -0.188 1.188 24 H -0.190 1.190 25 C 0.002 3.998 26 C -0.071 4.071 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.068 0.932 30 H 0.102 0.898 31 H 0.046 0.954 32 H 0.032 0.968 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.133 0.867 42 H 0.104 0.896 43 H 0.114 0.886 44 H 0.090 0.910 45 H 0.119 0.881 46 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -6.748 -9.779 -5.106 12.932 hybrid contribution 0.759 0.873 0.313 1.198 sum -5.989 -8.906 -4.794 11.754 Atomic orbital electron populations 1.21754 0.93978 1.01912 1.02195 1.22206 0.96975 0.87213 1.00999 1.58397 1.27141 1.19430 1.23655 1.21605 0.88211 0.98582 0.97083 1.21854 1.02621 0.93731 0.97645 1.21948 0.98692 0.99994 0.80172 1.56843 1.19721 1.86424 1.18620 1.00708 0.72635 0.73791 0.72027 1.93412 1.81798 1.67948 1.56418 1.93402 1.39539 1.87500 1.78783 1.30310 1.28765 1.22058 1.07310 1.20583 0.92959 0.97409 0.93214 1.20926 1.12111 0.92375 1.01107 1.21283 0.95784 0.98730 0.93922 1.21634 1.05406 0.97453 0.95535 1.17367 0.84415 0.90934 0.91088 1.20438 1.29529 1.09584 0.92915 0.87860 1.26616 0.92668 0.92676 1.04600 1.69799 1.26804 1.10871 1.35997 0.85663 0.79708 0.81042 0.76261 1.15432 1.18828 1.19002 1.21382 0.81305 0.95394 1.01765 1.21756 1.01693 0.94527 0.89120 0.92111 0.91163 0.93152 0.89757 0.95413 0.96814 0.88724 0.88628 0.89676 0.90682 0.91956 0.86137 0.85373 0.85895 0.86746 0.89579 0.88622 0.90983 0.88101 0.97015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 10.04 71.98 0.72 -1.58 16 2 C 0.05 1.04 5.77 86.30 0.50 1.54 16 3 N -0.56 -13.96 3.77 -911.62 -3.44 -17.39 16 4 C 0.07 1.87 5.32 85.87 0.46 2.33 16 5 C -0.12 -3.14 5.78 30.30 0.18 -2.96 16 6 C 0.12 4.11 4.69 86.44 0.41 4.51 16 7 N -0.98 -37.02 2.46 -512.13 -1.26 -38.28 16 8 S 2.71 122.69 4.96 -56.49 -0.28 122.41 16 9 O -1.01 -46.25 15.33 -128.00 -1.96 -48.21 16 10 O -1.00 -49.94 14.00 -128.00 -1.79 -51.73 16 11 C -0.79 -38.77 5.97 22.73 0.14 -38.63 16 12 C -0.02 -1.00 9.53 22.22 0.21 -0.79 16 13 C -0.25 -10.47 10.05 22.46 0.23 -10.25 16 14 C -0.08 -3.49 10.02 22.22 0.22 -3.26 16 15 C -0.18 -9.09 8.63 22.73 0.20 -8.89 16 16 C 0.17 8.64 5.52 -21.29 -0.12 8.52 16 17 C -0.50 -24.90 6.22 23.46 0.15 -24.76 16 18 H 0.10 5.27 4.55 -2.91 -0.01 5.26 16 19 C 0.05 2.41 4.98 85.25 0.42 2.83 16 20 N -0.81 -38.43 10.86 21.82 0.24 -38.19 16 21 Si 0.95 34.76 29.13 68.60 2.00 36.75 16 22 H -0.23 -7.59 7.11 99.48 0.71 -6.88 16 23 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 24 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 25 C 0.13 4.14 5.38 87.29 0.47 4.61 16 26 C 0.06 1.71 5.15 87.91 0.45 2.16 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.05 0.87 6.76 -2.39 -0.02 0.85 16 30 H 0.08 1.40 7.28 -2.38 -0.02 1.38 16 31 H 0.03 0.58 7.96 -2.39 -0.02 0.56 16 32 H 0.01 0.42 7.32 -2.38 -0.02 0.41 16 33 H 0.09 1.90 7.21 -2.39 -0.02 1.88 16 34 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.08 2.15 7.98 -2.39 -0.02 2.13 16 36 H 0.07 2.87 5.95 -2.39 -0.01 2.86 16 37 H 0.06 2.33 6.65 -2.39 -0.02 2.31 16 38 H 0.12 5.05 7.32 -2.91 -0.02 5.03 16 39 H 0.13 4.54 8.06 -2.91 -0.02 4.52 16 40 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 41 H 0.11 5.89 6.38 -2.91 -0.02 5.87 16 42 H 0.29 12.58 8.30 -92.70 -0.77 11.81 16 43 H 0.10 2.84 8.11 -2.39 -0.02 2.82 16 44 H 0.07 2.38 7.84 -2.39 -0.02 2.37 16 45 H 0.10 2.42 6.53 -2.39 -0.02 2.41 16 46 H 0.01 0.40 7.29 -2.39 -0.02 0.38 16 Total: -1.00 -61.40 358.83 -0.88 -62.28 By element: Atomic # 1 Polarization: 35.98 SS G_CDS: 0.99 Total: 36.97 kcal Atomic # 6 Polarization: -69.24 SS G_CDS: 4.63 Total: -64.62 kcal Atomic # 7 Polarization: -89.40 SS G_CDS: -4.46 Total: -93.86 kcal Atomic # 8 Polarization: -96.18 SS G_CDS: -3.75 Total: -99.94 kcal Atomic # 14 Polarization: 34.76 SS G_CDS: 2.00 Total: 36.75 kcal Atomic # 16 Polarization: 122.69 SS G_CDS: -0.28 Total: 122.41 kcal Total: -61.40 -0.88 -62.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601338963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.266 kcal (2) G-P(sol) polarization free energy of solvation -61.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds