Wall clock time and date at job start Tue Mar 31 2020 20:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47174 * 2 1 4 4 N 1.46905 * 109.47362 * 119.99777 * 2 1 3 5 5 C 1.52998 * 109.47020 * 239.99841 * 2 1 3 6 6 C 1.53047 * 109.46028 * 179.97438 * 5 2 1 7 7 C 1.53188 * 109.31287 * 181.37124 * 6 5 2 8 8 N 1.46924 * 108.77638 * 305.36928 * 7 6 5 9 9 S 1.65606 * 120.62861 * 233.58563 * 8 7 6 10 10 O 1.42098 * 106.40068 * 342.44894 * 9 8 7 11 11 O 1.42094 * 106.40040 * 209.53019 * 9 8 7 12 12 C 1.76196 * 107.21872 * 95.98874 * 9 8 7 13 13 C 1.37637 * 120.12729 * 112.36722 * 12 9 8 14 14 C 1.38620 * 120.24639 * 179.97438 * 13 12 9 15 15 C 1.38658 * 120.50328 * 0.02562 * 14 13 12 16 16 C 1.37602 * 120.24456 * 359.73644 * 15 14 13 17 17 C 1.40704 * 120.13013 * 292.34481 * 12 9 8 18 18 C 1.41397 * 120.24146 * 0.02562 * 17 12 9 19 19 H 1.08003 * 120.00163 * 331.03332 * 18 17 12 20 20 C 1.39941 * 120.00062 * 151.03249 * 18 17 12 21 21 N 1.30830 * 120.00071 * 164.92151 * 20 18 17 22 22 Si 1.86803 * 120.00096 * 344.91876 * 20 18 17 23 23 H 1.48498 * 109.46953 * 95.31898 * 22 20 18 24 24 H 1.48504 * 109.47294 * 215.32141 * 22 20 18 25 25 H 1.48498 * 109.46710 * 335.31954 * 22 20 18 26 26 C 1.46927 * 118.74286 * 53.85885 * 8 7 6 27 27 C 1.53041 * 109.45164 * 300.05940 * 5 2 1 28 28 H 1.08996 * 109.47405 * 59.99977 * 1 2 3 29 29 H 1.08998 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46905 * 299.99906 * 1 2 3 31 31 H 1.00896 * 111.00119 * 176.04728 * 4 2 1 32 32 H 1.00902 * 110.99700 * 300.00068 * 4 2 1 33 33 H 1.09001 * 109.45970 * 60.02743 * 5 2 1 34 34 H 1.08997 * 109.49391 * 61.42115 * 6 5 2 35 35 H 1.09003 * 109.52079 * 301.34224 * 6 5 2 36 36 H 1.08992 * 109.58742 * 185.57625 * 7 6 5 37 37 H 1.09006 * 109.70394 * 65.22537 * 7 6 5 38 38 H 1.07994 * 119.88015 * 359.95888 * 13 12 9 39 39 H 1.08000 * 119.74654 * 179.97438 * 14 13 12 40 40 H 1.07993 * 119.87258 * 179.97438 * 15 14 13 41 41 H 1.08002 * 120.12273 * 180.27902 * 16 15 14 42 42 H 0.97002 * 120.00064 * 179.97438 * 21 20 18 43 43 H 1.08990 * 109.58518 * 65.92682 * 26 8 7 44 44 H 1.09000 * 109.58857 * 186.35423 * 26 8 7 45 45 H 1.09004 * 109.49637 * 298.57597 * 27 5 2 46 46 H 1.09004 * 109.49180 * 58.66804 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0399 -0.7213 -1.2492 6 6 3.5704 -0.7206 -1.2493 7 6 4.0772 -1.4133 -2.5181 8 7 3.4744 -2.7506 -2.5999 9 16 4.4245 -4.0948 -2.7813 10 8 5.6899 -3.6335 -3.2342 11 8 3.6436 -5.0450 -3.4928 12 6 4.6866 -4.7690 -1.1747 13 6 4.1392 -5.9863 -0.8387 14 6 4.3443 -6.5193 0.4244 15 6 5.1009 -5.8344 1.3630 16 6 5.6617 -4.6182 1.0473 17 6 5.4566 -4.0653 -0.2304 18 6 6.0237 -2.8139 -0.5643 19 1 6.2867 -2.5963 -1.5890 20 6 6.2443 -1.8572 0.4328 21 7 7.0242 -0.8337 0.1964 22 14 5.4252 -2.0414 2.1016 23 1 6.3608 -2.7099 3.0411 24 1 5.0687 -0.6996 2.6289 25 1 4.1948 -2.8609 1.9611 26 6 2.0121 -2.8723 -2.5237 27 6 1.5283 -2.1636 -1.2495 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 3.0262 -0.7625 1.1910 32 1 1.6961 -0.2349 2.0386 33 1 1.6769 -0.2070 -2.1391 34 1 3.9344 -1.2559 -0.3724 35 1 3.9341 0.3067 -1.2254 36 1 5.1626 -1.5036 -2.4764 37 1 3.7926 -0.8300 -3.3940 38 1 3.5476 -6.5282 -1.5616 39 1 3.9106 -7.4750 0.6797 40 1 5.2538 -6.2590 2.3442 41 1 6.2545 -4.0885 1.7784 42 1 7.1768 -0.1703 0.8875 43 1 1.5605 -2.4048 -3.3985 44 1 1.7346 -3.9257 -2.4855 45 1 1.9112 -2.6856 -0.3725 46 1 0.4385 -2.1630 -1.2260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601339031.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:15 Heat of formation + Delta-G solvation = -60.168210 kcal Electronic energy + Delta-G solvation = -30261.688363 eV Core-core repulsion = 26470.348270 eV Total energy + Delta-G solvation = -3791.340093 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -38.83639 -37.85297 -36.40214 -35.47982 -34.89805 -33.90517 -30.90386 -30.72621 -30.62070 -30.09877 -28.71910 -25.43567 -24.46696 -22.87902 -22.07690 -21.25828 -20.91646 -19.18263 -18.05954 -17.75749 -17.21714 -16.32272 -15.85885 -15.48842 -15.39591 -15.02296 -14.33014 -14.15378 -14.11144 -13.77433 -13.66859 -13.48184 -13.08219 -12.89653 -12.86257 -12.32935 -12.29040 -11.94867 -11.85315 -11.79533 -11.67915 -11.29906 -11.26247 -11.09643 -11.02763 -10.95029 -10.67880 -10.62821 -10.55722 -10.23355 -10.05757 -9.97073 -9.70572 -9.45483 -9.27466 -8.49679 -8.37114 -8.16179 -7.83125 -7.22771 -4.88235 1.45877 2.09120 2.52660 2.88578 2.93700 3.13120 3.72242 3.83191 4.22199 4.65364 4.70166 4.93251 5.00161 5.11249 5.17101 5.31551 5.37364 5.59896 5.66304 5.69017 5.79499 5.83543 5.86875 5.87071 5.91784 5.98974 6.09472 6.13542 6.20589 6.23275 6.29314 6.37936 6.42490 6.50800 6.62120 6.72713 6.83613 6.95046 6.98075 7.09928 7.20315 7.32201 7.35710 7.44676 7.56977 7.57274 7.83965 8.13421 8.32659 8.51917 9.73649 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.007832 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.696490 B = 3574.378177 C = 4583.521381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.030 0.970 4 N -0.844 5.844 5 C -0.078 4.078 6 C -0.133 4.133 7 C 0.129 3.871 8 N -0.992 5.992 9 S 2.703 3.297 10 O -0.967 6.967 11 O -0.995 6.995 12 C -0.767 4.767 13 C 0.017 3.983 14 C -0.258 4.258 15 C -0.043 4.043 16 C -0.235 4.235 17 C 0.167 3.833 18 C -0.456 4.456 19 H 0.134 0.866 20 C 0.093 3.907 21 N -0.776 5.776 22 Si 0.889 3.111 23 H -0.270 1.270 24 H -0.288 1.288 25 H -0.225 1.225 26 C 0.126 3.874 27 C -0.122 4.122 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.342 0.658 32 H 0.333 0.667 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.053 0.947 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.290 0.710 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.717 3.978 1.405 10.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 H 0.048 0.952 4 N -0.377 5.377 5 C -0.097 4.097 6 C -0.171 4.171 7 C 0.004 3.996 8 N -0.828 5.828 9 S 2.801 3.199 10 O -0.958 6.958 11 O -0.986 6.986 12 C -0.861 4.861 13 C -0.003 4.003 14 C -0.278 4.278 15 C -0.062 4.062 16 C -0.255 4.255 17 C 0.162 3.838 18 C -0.483 4.483 19 H 0.151 0.849 20 C -0.130 4.130 21 N -0.397 5.397 22 Si 0.715 3.285 23 H -0.197 1.197 24 H -0.216 1.216 25 H -0.147 1.147 26 C 0.000 4.000 27 C -0.160 4.160 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.158 0.842 32 H 0.145 0.855 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.072 0.928 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.101 0.899 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.664 3.340 0.285 10.229 hybrid contribution 0.325 0.941 2.123 2.344 sum -9.339 4.281 2.408 10.552 Atomic orbital electron populations 1.21859 0.94875 1.02628 1.00871 1.21355 0.95053 0.94569 0.91114 0.95228 1.58851 1.16924 1.58126 1.03792 1.21170 0.96073 0.96343 0.96154 1.22006 0.94209 1.00369 1.00564 1.21411 1.00067 0.81860 0.96279 1.57639 1.15203 1.20485 1.89467 1.01098 0.72543 0.71772 0.74497 1.93492 1.40597 1.80686 1.81019 1.93440 1.71613 1.61444 1.72084 1.29947 1.21243 1.10134 1.24800 1.20385 0.92316 0.92300 0.95258 1.20484 1.10085 1.01930 0.95314 1.20810 0.93961 0.94282 0.97124 1.21144 1.07657 0.98022 0.98661 1.17045 0.85561 0.91289 0.89866 1.20471 1.31597 0.96414 0.99818 0.84882 1.26170 0.92232 0.94329 1.00273 1.69678 1.24565 1.09406 1.36087 0.86722 0.83100 0.77726 0.80953 1.19691 1.21571 1.14738 1.21397 0.79790 1.01133 0.97711 1.21980 0.99735 0.95472 0.98847 0.92534 0.91329 0.93400 0.84221 0.85466 0.91350 0.89588 0.92098 0.87286 0.92830 0.86982 0.88190 0.88415 0.87977 0.89921 0.92078 0.90020 0.89778 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.13 37.15 0.34 -1.20 16 2 C 0.09 1.16 3.18 -67.71 -0.22 0.94 16 3 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 4 N -0.84 -12.08 8.49 -4.67 -0.04 -12.12 16 5 C -0.08 -1.10 2.03 -90.58 -0.18 -1.28 16 6 C -0.13 -2.20 4.87 -26.61 -0.13 -2.33 16 7 C 0.13 2.30 5.53 -3.71 -0.02 2.28 16 8 N -0.99 -18.30 3.28 -113.28 -0.37 -18.67 16 9 S 2.70 58.97 5.11 -107.50 -0.55 58.42 16 10 O -0.97 -23.68 14.32 -57.17 -0.82 -24.50 16 11 O -1.00 -22.31 15.88 -57.17 -0.91 -23.22 16 12 C -0.77 -17.60 5.97 -38.87 -0.23 -17.83 16 13 C 0.02 0.37 9.54 -39.66 -0.38 -0.01 16 14 C -0.26 -5.26 10.05 -39.29 -0.39 -5.65 16 15 C -0.04 -0.90 10.02 -39.66 -0.40 -1.29 16 16 C -0.24 -5.40 7.01 -38.88 -0.27 -5.68 16 17 C 0.17 4.02 5.15 -106.83 -0.55 3.47 16 18 C -0.46 -11.11 6.50 -37.74 -0.25 -11.35 16 19 H 0.13 3.47 3.98 -52.48 -0.21 3.26 16 20 C 0.09 2.14 4.41 -17.34 -0.08 2.06 16 21 N -0.78 -17.97 13.93 55.55 0.77 -17.19 16 22 Si 0.89 18.30 21.44 -169.99 -3.64 14.66 16 23 H -0.27 -5.63 6.74 56.52 0.38 -5.25 16 24 H -0.29 -5.52 7.11 56.52 0.40 -5.12 16 25 H -0.22 -4.76 6.64 56.52 0.38 -4.39 16 26 C 0.13 1.95 6.38 -3.49 -0.02 1.93 16 27 C -0.12 -1.77 4.88 -26.39 -0.13 -1.90 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.77 6.40 -51.93 -0.33 0.43 16 30 H 0.05 0.47 8.14 -51.92 -0.42 0.04 16 31 H 0.34 5.55 4.95 -39.29 -0.19 5.36 16 32 H 0.33 4.07 9.04 -39.29 -0.36 3.71 16 33 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.62 3.45 -51.93 -0.18 1.44 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.11 2.25 4.85 -51.93 -0.25 1.99 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.11 2.21 7.32 -52.49 -0.38 1.83 16 39 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.10 2.30 4.42 -52.49 -0.23 2.07 16 42 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.08 1.27 7.29 -51.93 -0.38 0.89 16 45 H 0.08 1.45 7.65 -51.93 -0.40 1.05 16 46 H 0.07 0.82 6.36 -51.93 -0.33 0.49 16 LS Contribution 344.71 15.07 5.19 5.19 Total: -1.00 -27.78 344.71 -9.50 -37.28 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: -6.23 Total: 17.99 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: -2.91 Total: -37.85 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 0.36 Total: -47.98 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -1.73 Total: -47.72 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -3.64 Total: 14.66 kcal Atomic # 16 Polarization: 58.97 SS G_CDS: -0.55 Total: 58.42 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.78 -9.50 -37.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601339031.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.889 kcal (2) G-P(sol) polarization free energy of solvation -27.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds