Wall clock time and date at job start Tue Mar 31 2020 20:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47174 * 2 1 4 4 N 1.46905 * 109.47362 * 119.99777 * 2 1 3 5 5 C 1.52998 * 109.47020 * 239.99841 * 2 1 3 6 6 C 1.53047 * 109.46028 * 179.97438 * 5 2 1 7 7 C 1.53188 * 109.31287 * 181.37124 * 6 5 2 8 8 N 1.46924 * 108.77638 * 305.36928 * 7 6 5 9 9 S 1.65606 * 120.62861 * 233.58563 * 8 7 6 10 10 O 1.42098 * 106.40068 * 342.44894 * 9 8 7 11 11 O 1.42094 * 106.40040 * 209.53019 * 9 8 7 12 12 C 1.76196 * 107.21872 * 95.98874 * 9 8 7 13 13 C 1.37637 * 120.12729 * 112.36722 * 12 9 8 14 14 C 1.38620 * 120.24639 * 179.97438 * 13 12 9 15 15 C 1.38658 * 120.50328 * 0.02562 * 14 13 12 16 16 C 1.37602 * 120.24456 * 359.73644 * 15 14 13 17 17 C 1.40704 * 120.13013 * 292.34481 * 12 9 8 18 18 C 1.41397 * 120.24146 * 0.02562 * 17 12 9 19 19 H 1.08003 * 120.00163 * 331.03332 * 18 17 12 20 20 C 1.39941 * 120.00062 * 151.03249 * 18 17 12 21 21 N 1.30830 * 120.00071 * 164.92151 * 20 18 17 22 22 Si 1.86803 * 120.00096 * 344.91876 * 20 18 17 23 23 H 1.48498 * 109.46953 * 95.31898 * 22 20 18 24 24 H 1.48504 * 109.47294 * 215.32141 * 22 20 18 25 25 H 1.48498 * 109.46710 * 335.31954 * 22 20 18 26 26 C 1.46927 * 118.74286 * 53.85885 * 8 7 6 27 27 C 1.53041 * 109.45164 * 300.05940 * 5 2 1 28 28 H 1.08996 * 109.47405 * 59.99977 * 1 2 3 29 29 H 1.08998 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46905 * 299.99906 * 1 2 3 31 31 H 1.00896 * 111.00119 * 176.04728 * 4 2 1 32 32 H 1.00902 * 110.99700 * 300.00068 * 4 2 1 33 33 H 1.09001 * 109.45970 * 60.02743 * 5 2 1 34 34 H 1.08997 * 109.49391 * 61.42115 * 6 5 2 35 35 H 1.09003 * 109.52079 * 301.34224 * 6 5 2 36 36 H 1.08992 * 109.58742 * 185.57625 * 7 6 5 37 37 H 1.09006 * 109.70394 * 65.22537 * 7 6 5 38 38 H 1.07994 * 119.88015 * 359.95888 * 13 12 9 39 39 H 1.08000 * 119.74654 * 179.97438 * 14 13 12 40 40 H 1.07993 * 119.87258 * 179.97438 * 15 14 13 41 41 H 1.08002 * 120.12273 * 180.27902 * 16 15 14 42 42 H 0.97002 * 120.00064 * 179.97438 * 21 20 18 43 43 H 1.08990 * 109.58518 * 65.92682 * 26 8 7 44 44 H 1.09000 * 109.58857 * 186.35423 * 26 8 7 45 45 H 1.09004 * 109.49637 * 298.57597 * 27 5 2 46 46 H 1.09004 * 109.49180 * 58.66804 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0399 -0.7213 -1.2492 6 6 3.5704 -0.7206 -1.2493 7 6 4.0772 -1.4133 -2.5181 8 7 3.4744 -2.7506 -2.5999 9 16 4.4245 -4.0948 -2.7813 10 8 5.6899 -3.6335 -3.2342 11 8 3.6436 -5.0450 -3.4928 12 6 4.6866 -4.7690 -1.1747 13 6 4.1392 -5.9863 -0.8387 14 6 4.3443 -6.5193 0.4244 15 6 5.1009 -5.8344 1.3630 16 6 5.6617 -4.6182 1.0473 17 6 5.4566 -4.0653 -0.2304 18 6 6.0237 -2.8139 -0.5643 19 1 6.2867 -2.5963 -1.5890 20 6 6.2443 -1.8572 0.4328 21 7 7.0242 -0.8337 0.1964 22 14 5.4252 -2.0414 2.1016 23 1 6.3608 -2.7099 3.0411 24 1 5.0687 -0.6996 2.6289 25 1 4.1948 -2.8609 1.9611 26 6 2.0121 -2.8723 -2.5237 27 6 1.5283 -2.1636 -1.2495 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 3.0262 -0.7625 1.1910 32 1 1.6961 -0.2349 2.0386 33 1 1.6769 -0.2070 -2.1391 34 1 3.9344 -1.2559 -0.3724 35 1 3.9341 0.3067 -1.2254 36 1 5.1626 -1.5036 -2.4764 37 1 3.7926 -0.8300 -3.3940 38 1 3.5476 -6.5282 -1.5616 39 1 3.9106 -7.4750 0.6797 40 1 5.2538 -6.2590 2.3442 41 1 6.2545 -4.0885 1.7784 42 1 7.1768 -0.1703 0.8875 43 1 1.5605 -2.4048 -3.3985 44 1 1.7346 -3.9257 -2.4855 45 1 1.9112 -2.6856 -0.3725 46 1 0.4385 -2.1630 -1.2260 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601339031.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:14 Heat of formation + Delta-G solvation = -80.191326 kcal Electronic energy + Delta-G solvation = -30262.556630 eV Core-core repulsion = 26470.348270 eV Total energy + Delta-G solvation = -3792.208360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.06221 -39.52921 -38.17874 -36.75784 -36.62031 -35.63498 -32.48245 -32.07679 -31.93150 -31.79178 -29.68749 -27.16880 -25.68209 -24.16807 -23.73866 -22.93670 -22.17034 -20.41339 -19.61884 -19.50447 -18.79506 -17.96927 -17.20673 -17.02541 -16.78455 -16.22083 -15.92770 -15.70056 -15.36550 -15.32263 -15.21459 -14.90035 -14.58458 -14.37031 -14.12505 -13.95249 -13.72549 -13.45382 -13.21616 -13.06986 -12.94898 -12.87173 -12.79956 -12.69118 -12.56045 -12.44397 -12.25683 -12.06336 -11.90242 -11.67347 -11.51808 -11.25402 -11.20234 -10.98294 -10.93434 -9.96408 -9.70136 -9.56096 -9.51928 -8.96592 -6.67339 -0.21014 0.37526 0.80828 1.21611 1.29123 1.46545 2.06231 2.24884 2.51183 2.98417 3.36679 3.62574 3.65673 3.81896 3.92580 4.01400 4.19105 4.25585 4.30230 4.40394 4.50912 4.56467 4.63957 4.66549 4.68742 4.70711 4.84002 4.90773 4.92579 4.97522 5.04338 5.06186 5.17241 5.22125 5.24789 5.41031 5.44094 5.48767 5.52173 5.57492 5.72587 5.75396 5.85865 5.93208 6.12856 6.25005 6.32849 6.55610 6.57534 6.73582 8.05135 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.007832 C = 0.006107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.696490 B = 3574.378177 C = 4583.521381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.089 3.911 3 H 0.034 0.966 4 N -0.855 5.855 5 C -0.075 4.075 6 C -0.131 4.131 7 C 0.127 3.873 8 N -0.987 5.987 9 S 2.712 3.288 10 O -1.002 7.002 11 O -1.005 7.005 12 C -0.783 4.783 13 C 0.003 3.997 14 C -0.251 4.251 15 C -0.042 4.042 16 C -0.260 4.260 17 C 0.151 3.849 18 C -0.474 4.474 19 H 0.107 0.893 20 C 0.077 3.923 21 N -0.804 5.804 22 Si 0.932 3.068 23 H -0.274 1.274 24 H -0.268 1.268 25 H -0.236 1.236 26 C 0.116 3.884 27 C -0.114 4.114 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.329 0.671 32 H 0.343 0.657 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.127 0.873 39 H 0.136 0.864 40 H 0.133 0.867 41 H 0.101 0.899 42 H 0.299 0.701 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.054 0.946 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.320 4.011 2.312 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 H 0.052 0.948 4 N -0.388 5.388 5 C -0.093 4.093 6 C -0.170 4.170 7 C 0.002 3.998 8 N -0.825 5.825 9 S 2.810 3.190 10 O -0.993 6.993 11 O -0.995 6.995 12 C -0.876 4.876 13 C -0.017 4.017 14 C -0.271 4.271 15 C -0.061 4.061 16 C -0.280 4.280 17 C 0.147 3.853 18 C -0.502 4.502 19 H 0.125 0.875 20 C -0.144 4.144 21 N -0.427 5.427 22 Si 0.757 3.243 23 H -0.201 1.201 24 H -0.194 1.194 25 H -0.159 1.159 26 C -0.008 4.008 27 C -0.153 4.153 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.143 0.857 32 H 0.157 0.843 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.145 0.855 39 H 0.154 0.846 40 H 0.151 0.849 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.277 3.375 1.197 12.789 hybrid contribution 1.102 0.842 1.794 2.268 sum -11.175 4.218 2.991 12.313 Atomic orbital electron populations 1.21813 0.92837 1.02715 1.02224 1.21425 0.96555 0.94299 0.89875 0.94794 1.58898 1.15983 1.58919 1.05006 1.21184 0.93837 0.96410 0.97910 1.21965 0.96437 0.99856 0.98764 1.21437 0.98288 0.81843 0.98221 1.57397 1.16277 1.19512 1.89318 1.00637 0.72080 0.72139 0.74184 1.93445 1.42845 1.81318 1.81687 1.93412 1.71558 1.62235 1.72321 1.30184 1.21470 1.11027 1.24965 1.20716 0.92533 0.91996 0.96436 1.20942 1.08793 1.02904 0.94474 1.21237 0.92732 0.93284 0.98802 1.21287 1.08893 0.99350 0.98442 1.17230 0.85879 0.91398 0.90826 1.20324 1.33330 0.97445 0.99060 0.87521 1.26526 0.92159 0.93739 1.02010 1.69682 1.25544 1.10147 1.37282 0.86056 0.81691 0.78368 0.78223 1.20084 1.19440 1.15880 1.21734 0.77813 1.01668 0.99624 1.21915 1.01214 0.95297 0.96883 0.90834 0.91784 0.92480 0.85680 0.84347 0.89057 0.91845 0.91757 0.90722 0.90159 0.85499 0.84630 0.84898 0.88121 0.88983 0.89051 0.90284 0.92737 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.13 71.98 0.66 -1.81 16 2 C 0.09 2.07 3.18 44.91 0.14 2.21 16 3 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 4 N -0.86 -23.24 8.49 -168.68 -1.43 -24.67 16 5 C -0.07 -1.92 2.03 -10.77 -0.02 -1.94 16 6 C -0.13 -4.32 4.87 30.67 0.15 -4.17 16 7 C 0.13 4.57 5.53 86.36 0.48 5.05 16 8 N -0.99 -36.34 3.28 -512.32 -1.68 -38.02 16 9 S 2.71 120.84 5.11 -56.49 -0.29 120.55 16 10 O -1.00 -51.46 14.32 -128.00 -1.83 -53.29 16 11 O -1.00 -45.09 15.88 -128.00 -2.03 -47.12 16 12 C -0.78 -36.36 5.97 22.73 0.14 -36.23 16 13 C 0.00 0.12 9.54 22.22 0.21 0.33 16 14 C -0.25 -9.62 10.05 22.46 0.23 -9.40 16 15 C -0.04 -1.67 10.02 22.22 0.22 -1.45 16 16 C -0.26 -11.90 7.01 22.73 0.16 -11.74 16 17 C 0.15 7.43 5.15 -21.29 -0.11 7.32 16 18 C -0.47 -24.07 6.50 23.46 0.15 -23.91 16 19 H 0.11 5.94 3.98 -2.91 -0.01 5.93 16 20 C 0.08 3.62 4.41 85.25 0.38 4.00 16 21 N -0.80 -38.38 13.93 21.83 0.30 -38.08 16 22 Si 0.93 38.00 21.44 68.60 1.47 39.47 16 23 H -0.27 -11.19 6.74 99.48 0.67 -10.52 16 24 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 25 H -0.24 -9.94 6.64 99.48 0.66 -9.28 16 26 C 0.12 3.41 6.38 86.51 0.55 3.96 16 27 C -0.11 -3.10 4.88 30.82 0.15 -2.95 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.21 6.40 -2.39 -0.02 1.19 16 30 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.33 10.46 4.95 -89.70 -0.44 10.01 16 32 H 0.34 7.79 9.04 -89.69 -0.81 6.98 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.06 2.42 3.45 -2.39 -0.01 2.41 16 35 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 3.25 4.85 -2.39 -0.01 3.24 16 37 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 38 H 0.13 4.85 7.32 -2.91 -0.02 4.83 16 39 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 40 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 41 H 0.10 4.54 4.42 -2.91 -0.01 4.53 16 42 H 0.30 12.76 8.30 -92.71 -0.77 11.99 16 43 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.08 2.36 7.29 -2.39 -0.02 2.34 16 45 H 0.05 1.83 7.65 -2.39 -0.02 1.81 16 46 H 0.09 2.02 6.36 -2.39 -0.02 2.01 16 Total: -1.00 -61.66 344.71 -2.31 -63.98 By element: Atomic # 1 Polarization: 48.20 SS G_CDS: -0.30 Total: 47.90 kcal Atomic # 6 Polarization: -74.21 SS G_CDS: 3.48 Total: -70.72 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -2.81 Total: -100.77 kcal Atomic # 8 Polarization: -96.55 SS G_CDS: -3.87 Total: -100.41 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 1.47 Total: 39.47 kcal Atomic # 16 Polarization: 120.84 SS G_CDS: -0.29 Total: 120.55 kcal Total: -61.66 -2.31 -63.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601339031.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.215 kcal (2) G-P(sol) polarization free energy of solvation -61.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds