Wall clock time and date at job start Tue Mar 31 2020 20:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46936 * 2 1 4 4 N 1.46896 * 109.47180 * 239.99420 * 2 1 3 5 5 C 1.53007 * 109.46677 * 119.99653 * 2 1 3 6 6 H 1.08998 * 109.58397 * 299.56259 * 5 2 1 7 7 C 1.53193 * 109.58627 * 59.85140 * 5 2 1 8 8 C 1.53045 * 109.31125 * 174.56202 * 7 5 2 9 9 C 1.53034 * 109.53896 * 298.63647 * 8 7 5 10 10 C 1.53198 * 109.31392 * 61.36451 * 9 8 7 11 11 N 1.46926 * 109.69919 * 179.21201 * 5 2 1 12 12 S 1.65596 * 120.63302 * 6.51350 * 11 5 2 13 13 O 1.42102 * 106.40004 * 232.23347 * 12 11 5 14 14 O 1.42097 * 106.40193 * 5.14941 * 12 11 5 15 15 C 1.76198 * 107.22116 * 118.69481 * 12 11 5 16 16 C 1.37637 * 120.12847 * 115.80039 * 15 12 11 17 17 C 1.38613 * 120.24862 * 179.72348 * 16 15 12 18 18 C 1.38664 * 120.49957 * 0.55871 * 17 16 15 19 19 C 1.37598 * 120.24459 * 359.72321 * 18 17 16 20 20 C 1.40702 * 120.12584 * 296.08086 * 15 12 11 21 21 C 1.41394 * 120.24249 * 359.97438 * 20 15 12 22 22 H 1.08001 * 119.99993 * 330.75831 * 21 20 15 23 23 C 1.39946 * 119.99896 * 150.76087 * 21 20 15 24 24 N 1.30827 * 120.00238 * 173.50346 * 23 21 20 25 25 Si 1.86797 * 120.00027 * 353.50592 * 23 21 20 26 26 H 1.48499 * 109.47207 * 95.60510 * 25 23 21 27 27 H 1.48505 * 109.47270 * 215.60554 * 25 23 21 28 28 H 1.48507 * 109.47191 * 335.60558 * 25 23 21 29 29 H 1.09007 * 109.47097 * 302.09601 * 1 2 3 30 30 H 1.09001 * 109.46906 * 62.09513 * 1 2 3 31 31 H 1.08991 * 109.47624 * 182.09350 * 1 2 3 32 32 H 1.00897 * 110.99926 * 197.03462 * 4 2 1 33 33 H 1.00906 * 110.99820 * 320.98398 * 4 2 1 34 34 H 1.08994 * 109.49736 * 54.61404 * 7 5 2 35 35 H 1.09004 * 109.49654 * 294.51367 * 7 5 2 36 36 H 1.09004 * 109.45313 * 58.65412 * 8 7 5 37 37 H 1.08997 * 109.45919 * 178.61141 * 8 7 5 38 38 H 1.08993 * 109.49784 * 181.31666 * 9 8 7 39 39 H 1.09008 * 109.49903 * 301.41465 * 9 8 7 40 40 H 1.08998 * 109.58526 * 185.58240 * 10 9 8 41 41 H 1.08998 * 109.70651 * 65.21958 * 10 9 8 42 42 H 1.08002 * 119.87457 * 359.97438 * 16 15 12 43 43 H 1.07995 * 119.75204 * 180.26169 * 17 16 15 44 44 H 1.08001 * 119.87417 * 179.75016 * 18 17 16 45 45 H 1.08007 * 120.12127 * 180.02562 * 19 18 17 46 46 H 0.96997 * 120.00202 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0399 -0.7212 1.2494 6 1 1.6840 -0.2043 2.1405 7 6 1.5276 -2.1649 1.2540 8 6 2.1497 -2.9190 2.4316 9 6 3.6717 -2.9470 2.2748 10 6 4.2083 -1.5121 2.2818 11 7 3.5091 -0.7407 1.2451 12 16 4.3606 0.0905 0.0934 13 8 5.2695 -0.8381 -0.4817 14 8 3.4041 0.8151 -0.6678 15 6 5.3401 1.2902 0.9335 16 6 6.7137 1.2146 0.8888 17 6 7.4868 2.1604 1.5440 18 6 6.8875 3.1852 2.2606 19 6 5.5161 3.2770 2.3236 20 6 4.7212 2.3258 1.6575 21 6 3.3109 2.4103 1.7149 22 1 2.7138 2.0378 0.8957 23 6 2.6889 2.9768 2.8332 24 7 1.3952 3.1716 2.8336 25 14 3.7057 3.4550 4.3254 26 1 4.0532 4.8966 4.2464 27 1 2.9213 3.2019 5.5608 28 1 4.9511 2.6466 4.3555 29 1 -0.3634 0.5461 0.8707 30 1 -0.3633 0.4810 -0.9082 31 1 -0.3634 -1.0269 0.0375 32 1 2.9894 -0.9519 -1.0966 33 1 1.4502 -1.4987 -1.4092 34 1 1.8077 -2.6533 0.3206 35 1 0.4422 -2.1655 1.3541 36 1 1.8897 -2.4157 3.3629 37 1 1.7678 -3.9396 2.4517 38 1 4.1123 -3.5042 3.1015 39 1 3.9316 -3.4280 1.3318 40 1 5.2778 -1.5209 2.0716 41 1 4.0312 -1.0582 3.2568 42 1 7.1910 0.4177 0.3378 43 1 8.5639 2.0958 1.5002 44 1 7.4996 3.9144 2.7706 45 1 5.0515 4.0763 2.8820 46 1 0.9641 3.5646 3.6085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601339420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:24 Heat of formation + Delta-G solvation = 3.145182 kcal Electronic energy + Delta-G solvation = -30601.365774 eV Core-core repulsion = 26812.771156 eV Total energy + Delta-G solvation = -3788.594618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.18228 -37.95982 -36.83562 -35.45086 -34.14303 -33.90590 -32.11485 -30.78166 -30.23954 -29.87205 -28.26819 -25.49036 -24.07749 -23.70052 -22.18242 -21.24901 -20.64822 -19.91869 -18.25657 -17.80792 -17.19819 -16.29867 -15.85575 -15.42502 -15.18044 -14.55675 -14.44912 -14.32628 -14.01261 -13.89533 -13.60553 -13.54186 -13.47671 -13.13679 -12.78498 -12.42257 -12.37414 -12.01417 -11.84408 -11.49839 -11.42081 -11.30302 -11.16086 -10.99768 -10.92743 -10.81897 -10.80481 -10.70453 -10.44826 -10.40485 -10.24546 -9.90411 -9.60862 -9.35738 -9.08867 -8.39062 -8.21561 -7.87957 -7.83163 -7.21415 -4.92864 1.38631 2.04969 2.48249 2.90678 3.00642 3.08155 3.71240 3.72939 4.20784 4.52202 4.82519 4.96783 5.05571 5.07328 5.13221 5.32726 5.38282 5.51241 5.59592 5.64729 5.78348 5.81340 5.84928 5.88095 5.91257 6.04379 6.09593 6.13713 6.16981 6.17757 6.26626 6.31862 6.34397 6.53821 6.58086 6.64134 6.65988 6.89119 7.03107 7.09435 7.17556 7.29188 7.39330 7.50864 7.65706 7.79095 7.96525 8.14592 8.27529 8.48444 9.74392 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.007160 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.117146 B = 3909.690129 C = 4688.448244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.059 3.941 3 H 0.162 0.838 4 N -0.801 5.801 5 C 0.129 3.871 6 H 0.084 0.916 7 C -0.133 4.133 8 C -0.114 4.114 9 C -0.131 4.131 10 C 0.130 3.870 11 N -0.987 5.987 12 S 2.681 3.319 13 O -0.998 6.998 14 O -0.930 6.930 15 C -0.772 4.772 16 C 0.013 3.987 17 C -0.257 4.257 18 C -0.046 4.046 19 C -0.228 4.228 20 C 0.163 3.837 21 C -0.451 4.451 22 H 0.132 0.868 23 C 0.089 3.911 24 N -0.779 5.779 25 Si 0.903 3.097 26 H -0.269 1.269 27 H -0.290 1.290 28 H -0.233 1.233 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.305 0.695 33 H 0.309 0.691 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.640 -7.924 2.951 8.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.052 4.052 3 H 0.179 0.821 4 N -0.338 5.338 5 C 0.021 3.979 6 H 0.102 0.898 7 C -0.172 4.172 8 C -0.152 4.152 9 C -0.170 4.170 10 C 0.005 3.995 11 N -0.824 5.824 12 S 2.781 3.219 13 O -0.988 6.988 14 O -0.918 6.918 15 C -0.866 4.866 16 C -0.007 4.007 17 C -0.277 4.277 18 C -0.065 4.065 19 C -0.247 4.247 20 C 0.158 3.842 21 C -0.477 4.477 22 H 0.150 0.850 23 C -0.134 4.134 24 N -0.400 5.400 25 Si 0.730 3.270 26 H -0.195 1.195 27 H -0.218 1.218 28 H -0.156 1.156 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.085 0.915 42 H 0.130 0.870 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.116 0.884 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.099 -7.324 1.732 7.606 hybrid contribution 0.888 0.002 2.182 2.356 sum -0.211 -7.322 3.914 8.305 Atomic orbital electron populations 1.21938 0.94982 1.00784 1.02768 1.22862 0.94570 1.03398 0.84413 0.82130 1.59619 1.04222 1.29996 1.39927 1.21871 0.78630 0.95405 1.01987 0.89779 1.22035 1.00204 0.96262 0.98709 1.21442 0.95331 0.99705 0.98714 1.21880 0.96130 0.96870 1.02158 1.21203 0.95651 0.90761 0.91935 1.57558 1.14072 1.63992 1.46806 1.02107 0.72549 0.73805 0.73409 1.93463 1.65829 1.63866 1.75632 1.93763 1.55960 1.73267 1.68844 1.29898 1.05957 1.19460 1.31252 1.20408 0.92125 0.95579 0.92587 1.20489 0.97844 1.00712 1.08691 1.20788 0.94433 0.95929 0.95357 1.21031 0.93905 1.01430 1.08330 1.17080 0.92968 0.87452 0.86681 1.20484 0.90689 1.31837 1.04702 0.85040 1.26199 0.95316 0.91486 1.00435 1.69602 1.10528 1.29072 1.30846 0.86503 0.81232 0.80349 0.78883 1.19528 1.21790 1.15598 0.91459 0.91863 0.93733 0.87789 0.87773 0.92241 0.90866 0.91797 0.92364 0.91310 0.91546 0.90463 0.91528 0.87003 0.88083 0.88290 0.88400 0.89793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.97 37.16 0.33 -1.96 16 2 C 0.06 1.10 2.35 -67.71 -0.16 0.94 16 3 H 0.16 3.60 3.30 -54.96 -0.18 3.42 16 4 N -0.80 -14.74 7.64 -4.66 -0.04 -14.78 16 5 C 0.13 2.20 2.72 -67.60 -0.18 2.01 16 6 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 7 C -0.13 -1.81 4.69 -26.61 -0.12 -1.93 16 8 C -0.11 -1.39 5.88 -26.69 -0.16 -1.55 16 9 C -0.13 -1.69 6.08 -26.61 -0.16 -1.85 16 10 C 0.13 2.06 6.41 -3.71 -0.02 2.03 16 11 N -0.99 -17.91 2.96 -106.47 -0.32 -18.23 16 12 S 2.68 57.17 2.95 -107.50 -0.32 56.85 16 13 O -1.00 -22.33 16.41 -57.17 -0.94 -23.27 16 14 O -0.93 -21.42 9.33 -57.17 -0.53 -21.96 16 15 C -0.77 -17.64 5.88 -38.87 -0.23 -17.87 16 16 C 0.01 0.28 9.53 -39.66 -0.38 -0.10 16 17 C -0.26 -5.22 10.05 -39.29 -0.39 -5.61 16 18 C -0.05 -0.96 10.02 -39.66 -0.40 -1.36 16 19 C -0.23 -5.20 6.64 -38.88 -0.26 -5.46 16 20 C 0.16 3.91 5.26 -106.83 -0.56 3.35 16 21 C -0.45 -10.93 8.75 -37.74 -0.33 -11.26 16 22 H 0.13 3.30 3.56 -52.49 -0.19 3.12 16 23 C 0.09 2.06 5.51 -17.34 -0.10 1.97 16 24 N -0.78 -18.08 13.93 55.55 0.77 -17.31 16 25 Si 0.90 18.69 24.36 -169.99 -4.14 14.55 16 26 H -0.27 -5.49 6.93 56.52 0.39 -5.10 16 27 H -0.29 -5.81 7.11 56.52 0.40 -5.41 16 28 H -0.23 -4.91 5.94 56.52 0.34 -4.57 16 29 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.04 0.58 6.45 -51.93 -0.34 0.25 16 32 H 0.30 5.94 4.92 -16.56 -0.08 5.86 16 33 H 0.31 4.79 7.87 -39.29 -0.31 4.48 16 34 H 0.06 0.81 6.96 -51.93 -0.36 0.45 16 35 H 0.07 0.89 6.70 -51.93 -0.35 0.54 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 40 H 0.08 1.21 7.76 -51.93 -0.40 0.81 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.11 2.23 7.33 -52.49 -0.38 1.84 16 43 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.10 2.17 3.82 -52.48 -0.20 1.97 16 46 H 0.29 6.14 8.30 -40.82 -0.34 5.80 16 LS Contribution 344.53 15.07 5.19 5.19 Total: -1.00 -27.64 344.53 -9.66 -37.30 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: -6.23 Total: 20.30 kcal Atomic # 6 Polarization: -35.54 SS G_CDS: -3.12 Total: -38.66 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.42 Total: -50.31 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -1.47 Total: -45.22 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.14 Total: 14.55 kcal Atomic # 16 Polarization: 57.17 SS G_CDS: -0.32 Total: 56.85 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.64 -9.66 -37.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601339420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.449 kcal (2) G-P(sol) polarization free energy of solvation -27.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds