Wall clock time and date at job start Tue Mar 31 2020 20:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46936 * 2 1 4 4 N 1.46896 * 109.47180 * 239.99420 * 2 1 3 5 5 C 1.53007 * 109.46677 * 119.99653 * 2 1 3 6 6 H 1.08998 * 109.58397 * 299.56259 * 5 2 1 7 7 C 1.53193 * 109.58627 * 59.85140 * 5 2 1 8 8 C 1.53045 * 109.31125 * 174.56202 * 7 5 2 9 9 C 1.53034 * 109.53896 * 298.63647 * 8 7 5 10 10 C 1.53198 * 109.31392 * 61.36451 * 9 8 7 11 11 N 1.46926 * 109.69919 * 179.21201 * 5 2 1 12 12 S 1.65596 * 120.63302 * 6.51350 * 11 5 2 13 13 O 1.42102 * 106.40004 * 232.23347 * 12 11 5 14 14 O 1.42097 * 106.40193 * 5.14941 * 12 11 5 15 15 C 1.76198 * 107.22116 * 118.69481 * 12 11 5 16 16 C 1.37637 * 120.12847 * 115.80039 * 15 12 11 17 17 C 1.38613 * 120.24862 * 179.72348 * 16 15 12 18 18 C 1.38664 * 120.49957 * 0.55871 * 17 16 15 19 19 C 1.37598 * 120.24459 * 359.72321 * 18 17 16 20 20 C 1.40702 * 120.12584 * 296.08086 * 15 12 11 21 21 C 1.41394 * 120.24249 * 359.97438 * 20 15 12 22 22 H 1.08001 * 119.99993 * 330.75831 * 21 20 15 23 23 C 1.39946 * 119.99896 * 150.76087 * 21 20 15 24 24 N 1.30827 * 120.00238 * 173.50346 * 23 21 20 25 25 Si 1.86797 * 120.00027 * 353.50592 * 23 21 20 26 26 H 1.48499 * 109.47207 * 95.60510 * 25 23 21 27 27 H 1.48505 * 109.47270 * 215.60554 * 25 23 21 28 28 H 1.48507 * 109.47191 * 335.60558 * 25 23 21 29 29 H 1.09007 * 109.47097 * 302.09601 * 1 2 3 30 30 H 1.09001 * 109.46906 * 62.09513 * 1 2 3 31 31 H 1.08991 * 109.47624 * 182.09350 * 1 2 3 32 32 H 1.00897 * 110.99926 * 197.03462 * 4 2 1 33 33 H 1.00906 * 110.99820 * 320.98398 * 4 2 1 34 34 H 1.08994 * 109.49736 * 54.61404 * 7 5 2 35 35 H 1.09004 * 109.49654 * 294.51367 * 7 5 2 36 36 H 1.09004 * 109.45313 * 58.65412 * 8 7 5 37 37 H 1.08997 * 109.45919 * 178.61141 * 8 7 5 38 38 H 1.08993 * 109.49784 * 181.31666 * 9 8 7 39 39 H 1.09008 * 109.49903 * 301.41465 * 9 8 7 40 40 H 1.08998 * 109.58526 * 185.58240 * 10 9 8 41 41 H 1.08998 * 109.70651 * 65.21958 * 10 9 8 42 42 H 1.08002 * 119.87457 * 359.97438 * 16 15 12 43 43 H 1.07995 * 119.75204 * 180.26169 * 17 16 15 44 44 H 1.08001 * 119.87417 * 179.75016 * 18 17 16 45 45 H 1.08007 * 120.12127 * 180.02562 * 19 18 17 46 46 H 0.96997 * 120.00202 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1993 5 6 2.0399 -0.7212 1.2494 6 1 1.6840 -0.2043 2.1405 7 6 1.5276 -2.1649 1.2540 8 6 2.1497 -2.9190 2.4316 9 6 3.6717 -2.9470 2.2748 10 6 4.2083 -1.5121 2.2818 11 7 3.5091 -0.7407 1.2451 12 16 4.3606 0.0905 0.0934 13 8 5.2695 -0.8381 -0.4817 14 8 3.4041 0.8151 -0.6678 15 6 5.3401 1.2902 0.9335 16 6 6.7137 1.2146 0.8888 17 6 7.4868 2.1604 1.5440 18 6 6.8875 3.1852 2.2606 19 6 5.5161 3.2770 2.3236 20 6 4.7212 2.3258 1.6575 21 6 3.3109 2.4103 1.7149 22 1 2.7138 2.0378 0.8957 23 6 2.6889 2.9768 2.8332 24 7 1.3952 3.1716 2.8336 25 14 3.7057 3.4550 4.3254 26 1 4.0532 4.8966 4.2464 27 1 2.9213 3.2019 5.5608 28 1 4.9511 2.6466 4.3555 29 1 -0.3634 0.5461 0.8707 30 1 -0.3633 0.4810 -0.9082 31 1 -0.3634 -1.0269 0.0375 32 1 2.9894 -0.9519 -1.0966 33 1 1.4502 -1.4987 -1.4092 34 1 1.8077 -2.6533 0.3206 35 1 0.4422 -2.1655 1.3541 36 1 1.8897 -2.4157 3.3629 37 1 1.7678 -3.9396 2.4517 38 1 4.1123 -3.5042 3.1015 39 1 3.9316 -3.4280 1.3318 40 1 5.2778 -1.5209 2.0716 41 1 4.0312 -1.0582 3.2568 42 1 7.1910 0.4177 0.3378 43 1 8.5639 2.0958 1.5002 44 1 7.4996 3.9144 2.7706 45 1 5.0515 4.0763 2.8820 46 1 0.9641 3.5646 3.6085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601339420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:23 Heat of formation + Delta-G solvation = -15.540961 kcal Electronic energy + Delta-G solvation = -30602.176066 eV Core-core repulsion = 26812.771156 eV Total energy + Delta-G solvation = -3789.404910 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.51882 -39.64976 -38.39545 -37.08766 -35.63714 -35.60687 -33.35510 -32.48482 -31.91055 -31.16182 -29.60027 -27.21331 -25.36520 -24.91339 -23.85371 -22.94649 -21.92548 -21.24233 -19.80552 -19.54148 -18.75821 -17.81921 -17.46815 -16.95374 -16.71297 -16.04546 -15.93725 -15.72941 -15.48742 -15.21858 -15.12273 -15.05874 -14.75055 -14.58364 -14.32973 -14.05786 -13.62651 -13.57093 -13.39122 -13.02130 -12.88994 -12.82562 -12.75692 -12.55522 -12.41657 -12.29740 -12.09101 -12.05390 -11.90281 -11.61790 -11.54969 -11.45294 -11.27568 -10.98425 -10.61427 -9.94719 -9.73292 -9.58758 -9.29471 -8.93993 -6.71080 -0.22552 0.34767 0.76555 1.23636 1.35602 1.42647 2.04637 2.20203 2.50115 2.88786 3.31701 3.52411 3.65748 3.79411 3.95165 3.99652 4.11854 4.21652 4.24453 4.25122 4.38029 4.42354 4.58723 4.60160 4.63807 4.68885 4.78296 4.85841 4.91305 4.98241 4.98894 5.09727 5.16183 5.19248 5.21163 5.32970 5.35322 5.37026 5.48881 5.51679 5.60129 5.74850 5.81792 5.87952 6.10727 6.17327 6.34496 6.52767 6.67922 6.74197 8.05649 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011586 B = 0.007160 C = 0.005971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.117146 B = 3909.690129 C = 4688.448244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.056 3.944 3 H 0.120 0.880 4 N -0.809 5.809 5 C 0.132 3.868 6 H 0.067 0.933 7 C -0.128 4.128 8 C -0.112 4.112 9 C -0.126 4.126 10 C 0.118 3.882 11 N -0.983 5.983 12 S 2.690 3.310 13 O -1.014 7.014 14 O -0.953 6.953 15 C -0.790 4.790 16 C -0.005 4.005 17 C -0.250 4.250 18 C -0.046 4.046 19 C -0.253 4.253 20 C 0.147 3.853 21 C -0.475 4.475 22 H 0.115 0.885 23 C 0.062 3.938 24 N -0.805 5.805 25 Si 0.946 3.054 26 H -0.264 1.264 27 H -0.280 1.280 28 H -0.239 1.239 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.297 0.703 33 H 0.327 0.673 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.124 0.876 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.101 0.899 46 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.067 -9.418 4.301 10.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.056 4.056 3 H 0.137 0.863 4 N -0.347 5.347 5 C 0.025 3.975 6 H 0.085 0.915 7 C -0.168 4.168 8 C -0.149 4.149 9 C -0.165 4.165 10 C -0.007 4.007 11 N -0.822 5.822 12 S 2.790 3.210 13 O -1.004 7.004 14 O -0.942 6.942 15 C -0.882 4.882 16 C -0.025 4.025 17 C -0.270 4.270 18 C -0.064 4.064 19 C -0.273 4.273 20 C 0.142 3.858 21 C -0.502 4.502 22 H 0.133 0.867 23 C -0.158 4.158 24 N -0.428 5.428 25 Si 0.771 3.229 26 H -0.190 1.190 27 H -0.207 1.207 28 H -0.162 1.162 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.142 0.858 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.105 0.895 38 H 0.115 0.885 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.141 0.859 43 H 0.155 0.845 44 H 0.154 0.846 45 H 0.118 0.882 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.392 -8.812 3.078 9.342 hybrid contribution 0.757 0.460 1.689 1.907 sum 0.365 -8.352 4.768 9.624 Atomic orbital electron populations 1.21859 0.92991 1.02650 1.02202 1.22618 0.96164 1.01509 0.85283 0.86294 1.59499 1.04054 1.30940 1.40218 1.21841 0.77839 0.97579 1.00272 0.91526 1.22040 1.01370 0.93605 0.99749 1.21461 0.94590 1.01022 0.97852 1.21880 0.96834 0.94638 1.03144 1.21490 0.95525 0.92553 0.91139 1.57360 1.14515 1.63510 1.46837 1.01766 0.72154 0.73455 0.73652 1.93428 1.66515 1.64085 1.76333 1.93781 1.56223 1.73917 1.70229 1.30231 1.07063 1.19968 1.30976 1.20732 0.91908 0.96589 0.93238 1.20958 0.99665 0.99448 1.06895 1.21233 0.93953 0.96485 0.94713 1.21228 0.95111 1.01672 1.09247 1.17280 0.93086 0.88093 0.87338 1.20485 0.91094 1.33479 1.05168 0.86723 1.26674 0.95975 0.91301 1.01848 1.69615 1.11258 1.30061 1.31868 0.85833 0.80022 0.80053 0.76969 1.19023 1.20689 1.16243 0.92145 0.92350 0.90518 0.88639 0.85844 0.91954 0.88916 0.91707 0.89535 0.88530 0.91900 0.90923 0.91444 0.85857 0.84519 0.84603 0.88162 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 8.97 71.98 0.65 -3.69 16 2 C 0.06 2.14 2.35 44.92 0.11 2.24 16 3 H 0.12 5.67 3.30 -50.38 -0.17 5.51 16 4 N -0.81 -30.11 7.64 -168.67 -1.29 -31.40 16 5 C 0.13 4.52 2.72 44.98 0.12 4.64 16 6 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 7 C -0.13 -3.23 4.69 30.67 0.14 -3.08 16 8 C -0.11 -2.39 5.88 30.62 0.18 -2.21 16 9 C -0.13 -2.94 6.08 30.67 0.19 -2.76 16 10 C 0.12 3.65 6.41 86.36 0.55 4.20 16 11 N -0.98 -36.02 2.96 -490.75 -1.45 -37.48 16 12 S 2.69 117.80 2.95 -56.49 -0.17 117.63 16 13 O -1.01 -45.98 16.41 -128.00 -2.10 -48.08 16 14 O -0.95 -46.02 9.33 -128.00 -1.19 -47.21 16 15 C -0.79 -36.65 5.88 22.73 0.13 -36.52 16 16 C -0.01 -0.22 9.53 22.22 0.21 0.00 16 17 C -0.25 -9.55 10.05 22.46 0.23 -9.32 16 18 C -0.05 -1.78 10.02 22.22 0.22 -1.56 16 19 C -0.25 -11.43 6.64 22.73 0.15 -11.28 16 20 C 0.15 7.16 5.26 -21.29 -0.11 7.05 16 21 C -0.48 -23.98 8.75 23.46 0.21 -23.78 16 22 H 0.12 6.14 3.56 -2.91 -0.01 6.13 16 23 C 0.06 2.97 5.51 85.26 0.47 3.44 16 24 N -0.81 -38.48 13.93 21.83 0.30 -38.18 16 25 Si 0.95 38.34 24.36 68.60 1.67 40.01 16 26 H -0.26 -10.39 6.93 99.48 0.69 -9.70 16 27 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 28 H -0.24 -9.83 5.94 99.48 0.59 -9.24 16 29 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.08 1.86 6.45 -2.39 -0.02 1.84 16 32 H 0.30 11.78 4.92 -104.15 -0.51 11.27 16 33 H 0.33 9.86 7.87 -89.69 -0.71 9.15 16 34 H 0.06 1.55 6.96 -2.39 -0.02 1.53 16 35 H 0.09 1.98 6.70 -2.39 -0.02 1.96 16 36 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.07 2.27 7.76 -2.39 -0.02 2.25 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.12 4.83 7.33 -2.91 -0.02 4.81 16 43 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 44 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 45 H 0.10 4.39 3.82 -2.91 -0.01 4.38 16 46 H 0.30 12.85 8.30 -92.71 -0.77 12.08 16 Total: -1.00 -61.42 344.53 -1.26 -62.68 By element: Atomic # 1 Polarization: 55.13 SS G_CDS: -0.48 Total: 54.65 kcal Atomic # 6 Polarization: -76.08 SS G_CDS: 3.45 Total: -72.64 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -2.44 Total: -107.05 kcal Atomic # 8 Polarization: -92.00 SS G_CDS: -3.29 Total: -95.29 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 1.67 Total: 40.01 kcal Atomic # 16 Polarization: 117.80 SS G_CDS: -0.17 Total: 117.63 kcal Total: -61.42 -1.26 -62.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601339420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.140 kcal (2) G-P(sol) polarization free energy of solvation -61.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds