Wall clock time and date at job start Tue Mar 31 2020 20:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47519 * 2 1 4 4 N 1.46901 * 109.46996 * 119.99685 * 2 1 3 5 5 C 1.53001 * 109.47713 * 239.99773 * 2 1 3 6 6 H 1.09001 * 109.58234 * 57.24133 * 5 2 1 7 7 C 1.53192 * 109.58350 * 296.96498 * 5 2 1 8 8 C 1.53050 * 109.31146 * 185.43030 * 7 5 2 9 9 C 1.53041 * 109.52387 * 61.36797 * 8 7 5 10 10 C 1.53195 * 109.31166 * 298.61316 * 9 8 7 11 11 N 1.46922 * 108.76455 * 54.66405 * 10 9 8 12 12 S 1.65591 * 120.63590 * 126.35971 * 11 10 9 13 13 O 1.42099 * 106.40791 * 174.23392 * 12 11 10 14 14 O 1.42098 * 106.40212 * 307.15498 * 12 11 10 15 15 C 1.76209 * 107.21846 * 60.69404 * 12 11 10 16 16 C 1.37636 * 120.12491 * 104.40466 * 15 12 11 17 17 C 1.38616 * 120.24551 * 179.72695 * 16 15 12 18 18 C 1.38656 * 120.49868 * 0.54766 * 17 16 15 19 19 C 1.37600 * 120.25144 * 359.72295 * 18 17 16 20 20 C 1.40698 * 120.12462 * 284.67510 * 15 12 11 21 21 C 1.41387 * 120.24549 * 359.97438 * 20 15 12 22 22 H 1.08004 * 120.00486 * 332.51819 * 21 20 15 23 23 C 1.39943 * 120.00361 * 152.52589 * 21 20 15 24 24 N 1.30830 * 119.99501 * 4.72602 * 23 21 20 25 25 Si 1.86798 * 120.00752 * 184.72714 * 23 21 20 26 26 H 1.48511 * 109.46788 * 4.99406 * 25 23 21 27 27 H 1.48500 * 109.47128 * 124.99103 * 25 23 21 28 28 H 1.48502 * 109.47212 * 244.99703 * 25 23 21 29 29 H 1.08995 * 109.47418 * 185.01049 * 1 2 3 30 30 H 1.08998 * 109.47525 * 305.01766 * 1 2 3 31 31 H 1.09006 * 109.46500 * 65.01233 * 1 2 3 32 32 H 1.00906 * 110.99754 * 60.51287 * 4 2 1 33 33 H 1.00903 * 111.00364 * 184.46256 * 4 2 1 34 34 H 1.08992 * 109.50346 * 65.47846 * 7 5 2 35 35 H 1.08994 * 109.49580 * 305.37434 * 7 5 2 36 36 H 1.08989 * 109.45928 * 181.37912 * 8 7 5 37 37 H 1.08993 * 109.45872 * 301.35792 * 8 7 5 38 38 H 1.09003 * 109.49700 * 58.58001 * 9 8 7 39 39 H 1.09000 * 109.49548 * 178.67719 * 9 8 7 40 40 H 1.08989 * 109.60093 * 294.86399 * 10 9 8 41 41 H 1.09002 * 109.69708 * 174.50761 * 10 9 8 42 42 H 1.07998 * 119.87814 * 359.97040 * 16 15 12 43 43 H 1.07998 * 119.75106 * 180.25663 * 17 16 15 44 44 H 1.08006 * 119.87612 * 179.75355 * 18 17 16 45 45 H 1.07995 * 120.13035 * 180.02562 * 19 18 17 46 46 H 0.97002 * 120.00060 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0401 -0.7213 -1.2492 6 1 1.6380 -0.2382 -2.1397 7 6 1.5943 -2.1865 -1.2141 8 6 2.2196 -2.9341 -2.3941 9 6 3.7449 -2.8903 -2.2770 10 6 4.2150 -1.4330 -2.3245 11 7 3.5082 -0.6743 -1.2836 12 16 4.3501 0.2166 -0.1702 13 8 3.3821 0.9232 0.5933 14 8 5.3051 -0.6626 0.4078 15 6 5.2661 1.4314 -1.0591 16 6 4.8480 2.7427 -1.0673 17 6 5.5699 3.7014 -1.7610 18 6 6.7129 3.3502 -2.4630 19 6 7.1464 2.0443 -2.4732 20 6 6.4246 1.0635 -1.7678 21 6 6.8607 -0.2814 -1.7708 22 1 6.6248 -0.9275 -0.9381 23 6 7.5981 -0.7756 -2.8526 24 7 7.9634 0.0292 -3.8173 25 14 8.0610 -2.5841 -2.9195 26 1 7.4308 -3.2987 -1.7803 27 1 7.5827 -3.1705 -4.1972 28 1 9.5372 -2.7208 -2.8338 29 1 -0.3634 -1.0237 0.0897 30 1 -0.3634 0.5897 0.8416 31 1 -0.3632 0.4341 -0.9316 32 1 1.7029 -1.6503 1.2186 33 1 3.0256 -0.6429 1.2603 34 1 0.5079 -2.2381 -1.2853 35 1 1.9203 -2.6436 -0.2800 36 1 1.8845 -3.9712 -2.3856 37 1 1.9133 -2.4611 -3.3271 38 1 4.0504 -3.3407 -1.3326 39 1 4.1893 -3.4428 -3.1048 40 1 3.9904 -1.0081 -3.3027 41 1 5.2890 -1.3873 -2.1442 42 1 3.9564 3.0264 -0.5280 43 1 5.2368 4.7287 -1.7587 44 1 7.2655 4.1047 -3.0033 45 1 8.0372 1.7731 -3.0203 46 1 8.4743 -0.3133 -4.5673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601339422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:31 Heat of formation + Delta-G solvation = 0.831412 kcal Electronic energy + Delta-G solvation = -30312.798590 eV Core-core repulsion = 26524.103639 eV Total energy + Delta-G solvation = -3788.694951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.23295 -37.77120 -36.97748 -35.37089 -34.29592 -34.03683 -32.09672 -30.34906 -29.89619 -29.51855 -28.50650 -25.73407 -24.11041 -23.66867 -21.71623 -21.17643 -20.65013 -19.96336 -18.25768 -17.84509 -17.02093 -16.27235 -15.83140 -15.51684 -15.19401 -14.60450 -14.46457 -14.26691 -14.05188 -13.88269 -13.54709 -13.33828 -13.10778 -13.00492 -12.86370 -12.50968 -12.21645 -12.08079 -11.71955 -11.44081 -11.38861 -11.29093 -11.23274 -11.18491 -11.04167 -10.88754 -10.76175 -10.60007 -10.48261 -10.46395 -10.11406 -10.03394 -9.51320 -9.20759 -9.10365 -8.40473 -8.16737 -8.07688 -7.61356 -7.00556 -4.88953 1.37238 2.24862 2.66854 2.90179 2.97580 3.03613 3.68831 3.76502 4.31736 4.44386 4.73161 4.92201 5.06340 5.07449 5.22196 5.34367 5.37868 5.45137 5.57875 5.66780 5.74383 5.85103 5.90813 5.97306 5.99041 6.05106 6.18064 6.18882 6.20545 6.28394 6.33896 6.37340 6.41525 6.62879 6.70313 6.75292 6.90639 6.98327 7.00470 7.25246 7.30685 7.47110 7.54166 7.71550 7.79254 7.85000 7.90164 8.36478 8.44076 8.62466 9.78951 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011831 B = 0.006952 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.045350 B = 4026.477327 C = 5540.055302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.052 3.948 3 H 0.155 0.845 4 N -0.820 5.820 5 C 0.117 3.883 6 H 0.072 0.928 7 C -0.129 4.129 8 C -0.114 4.114 9 C -0.136 4.136 10 C 0.096 3.904 11 N -0.991 5.991 12 S 2.678 3.322 13 O -0.967 6.967 14 O -0.970 6.970 15 C -0.771 4.771 16 C -0.005 4.005 17 C -0.245 4.245 18 C -0.079 4.079 19 C -0.167 4.167 20 C 0.177 3.823 21 C -0.478 4.478 22 H 0.132 0.868 23 C 0.075 3.925 24 N -0.781 5.781 25 Si 0.902 3.098 26 H -0.246 1.246 27 H -0.266 1.266 28 H -0.265 1.265 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.317 0.683 33 H 0.324 0.676 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.132 0.868 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.151 0.849 46 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.189 -4.439 -1.249 9.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.062 4.062 3 H 0.171 0.829 4 N -0.362 5.362 5 C 0.009 3.991 6 H 0.090 0.910 7 C -0.169 4.169 8 C -0.152 4.152 9 C -0.175 4.175 10 C -0.028 4.028 11 N -0.828 5.828 12 S 2.781 3.219 13 O -0.955 6.955 14 O -0.960 6.960 15 C -0.867 4.867 16 C -0.025 4.025 17 C -0.265 4.265 18 C -0.098 4.098 19 C -0.186 4.186 20 C 0.172 3.828 21 C -0.506 4.506 22 H 0.149 0.851 23 C -0.145 4.145 24 N -0.405 5.405 25 Si 0.725 3.275 26 H -0.168 1.168 27 H -0.191 1.191 28 H -0.190 1.190 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.131 0.869 33 H 0.146 0.854 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.149 0.851 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.168 0.832 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.425 -4.046 -0.138 9.347 hybrid contribution 0.973 -0.892 -1.740 2.184 sum -7.452 -4.938 -1.878 9.134 Atomic orbital electron populations 1.21822 0.94867 1.01441 1.01639 1.22816 0.94943 1.03135 0.85270 0.82863 1.59246 1.16647 1.18753 1.41597 1.21974 0.80073 0.96290 1.00796 0.91009 1.21971 1.00049 0.95718 0.99147 1.21457 0.95918 0.99567 0.98267 1.21929 0.95554 0.97755 1.02233 1.22270 1.00255 0.89581 0.90700 1.57761 1.13341 1.63288 1.48424 1.02024 0.72331 0.74077 0.73437 1.93519 1.56716 1.75369 1.69939 1.93461 1.61437 1.65799 1.75305 1.29760 1.14527 1.10719 1.31663 1.20212 0.96507 0.91725 0.94045 1.20566 1.00765 0.97735 1.07454 1.21037 0.95575 0.96429 0.96786 1.22242 1.02280 0.91102 1.03019 1.17176 0.86784 0.92953 0.85845 1.20880 1.27777 0.96755 1.05214 0.85110 1.26139 0.92634 1.01230 0.94522 1.69706 1.26526 1.36599 1.07652 0.86290 0.80039 0.81050 0.80153 1.16839 1.19071 1.18996 0.93275 0.91815 0.92552 0.86938 0.85412 0.91075 0.91818 0.92392 0.92062 0.91538 0.91441 0.92406 0.85073 0.87405 0.88697 0.88757 0.83184 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.08 37.15 0.34 -1.41 16 2 C 0.05 0.81 2.39 -67.71 -0.16 0.65 16 3 H 0.15 2.78 5.30 -50.09 -0.27 2.51 16 4 N -0.82 -13.96 8.52 -4.67 -0.04 -14.00 16 5 C 0.12 1.79 2.77 -67.60 -0.19 1.60 16 6 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 7 C -0.13 -1.67 4.68 -26.61 -0.12 -1.79 16 8 C -0.11 -1.45 5.89 -26.68 -0.16 -1.61 16 9 C -0.14 -2.05 6.08 -26.61 -0.16 -2.21 16 10 C 0.10 1.74 6.24 -3.71 -0.02 1.72 16 11 N -0.99 -18.03 3.25 -106.48 -0.35 -18.37 16 12 S 2.68 56.88 3.56 -107.50 -0.38 56.50 16 13 O -0.97 -20.16 9.51 -57.17 -0.54 -20.70 16 14 O -0.97 -23.12 14.57 -57.17 -0.83 -23.95 16 15 C -0.77 -18.12 5.91 -38.87 -0.23 -18.35 16 16 C -0.01 -0.11 9.53 -39.66 -0.38 -0.49 16 17 C -0.24 -5.29 10.05 -39.29 -0.39 -5.69 16 18 C -0.08 -1.76 10.02 -39.66 -0.40 -2.16 16 19 C -0.17 -4.07 8.78 -38.87 -0.34 -4.41 16 20 C 0.18 4.42 5.63 -106.83 -0.60 3.82 16 21 C -0.48 -11.62 5.30 -37.75 -0.20 -11.82 16 22 H 0.13 3.27 4.41 -52.48 -0.23 3.04 16 23 C 0.07 1.69 5.21 -17.34 -0.09 1.60 16 24 N -0.78 -17.78 10.17 55.55 0.56 -17.22 16 25 Si 0.90 17.06 29.10 -169.99 -4.95 12.11 16 26 H -0.25 -4.67 7.11 56.52 0.40 -4.27 16 27 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 28 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 29 H 0.05 0.55 6.91 -51.93 -0.36 0.19 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.32 4.66 6.95 -39.29 -0.27 4.39 16 33 H 0.32 6.19 4.78 -13.49 -0.06 6.13 16 34 H 0.07 0.77 6.93 -51.93 -0.36 0.41 16 35 H 0.06 0.84 6.35 -51.93 -0.33 0.51 16 36 H 0.06 0.64 8.14 -51.94 -0.42 0.21 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 1.02 8.14 -51.94 -0.42 0.60 16 41 H 0.13 2.70 2.72 -51.93 -0.14 2.56 16 42 H 0.11 2.18 7.37 -52.49 -0.39 1.79 16 43 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.09 1.83 8.06 -52.48 -0.42 1.40 16 45 H 0.15 3.71 5.53 -52.49 -0.29 3.42 16 46 H 0.29 5.84 8.30 -40.82 -0.34 5.51 16 LS Contribution 344.32 15.07 5.19 5.19 Total: -1.00 -27.00 344.32 -10.51 -37.52 By element: Atomic # 1 Polarization: 29.53 SS G_CDS: -6.06 Total: 23.47 kcal Atomic # 6 Polarization: -37.43 SS G_CDS: -3.11 Total: -40.54 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.18 Total: -49.58 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -1.38 Total: -44.66 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -4.95 Total: 12.11 kcal Atomic # 16 Polarization: 56.88 SS G_CDS: -0.38 Total: 56.50 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -27.00 -10.51 -37.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601339422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.347 kcal (2) G-P(sol) polarization free energy of solvation -27.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds