Wall clock time and date at job start Tue Mar 31 2020 20:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47519 * 2 1 4 4 N 1.46901 * 109.46996 * 119.99685 * 2 1 3 5 5 C 1.53001 * 109.47713 * 239.99773 * 2 1 3 6 6 H 1.09001 * 109.58234 * 57.24133 * 5 2 1 7 7 C 1.53192 * 109.58350 * 296.96498 * 5 2 1 8 8 C 1.53050 * 109.31146 * 185.43030 * 7 5 2 9 9 C 1.53041 * 109.52387 * 61.36797 * 8 7 5 10 10 C 1.53195 * 109.31166 * 298.61316 * 9 8 7 11 11 N 1.46922 * 108.76455 * 54.66405 * 10 9 8 12 12 S 1.65591 * 120.63590 * 126.35971 * 11 10 9 13 13 O 1.42099 * 106.40791 * 174.23392 * 12 11 10 14 14 O 1.42098 * 106.40212 * 307.15498 * 12 11 10 15 15 C 1.76209 * 107.21846 * 60.69404 * 12 11 10 16 16 C 1.37636 * 120.12491 * 104.40466 * 15 12 11 17 17 C 1.38616 * 120.24551 * 179.72695 * 16 15 12 18 18 C 1.38656 * 120.49868 * 0.54766 * 17 16 15 19 19 C 1.37600 * 120.25144 * 359.72295 * 18 17 16 20 20 C 1.40698 * 120.12462 * 284.67510 * 15 12 11 21 21 C 1.41387 * 120.24549 * 359.97438 * 20 15 12 22 22 H 1.08004 * 120.00486 * 332.51819 * 21 20 15 23 23 C 1.39943 * 120.00361 * 152.52589 * 21 20 15 24 24 N 1.30830 * 119.99501 * 4.72602 * 23 21 20 25 25 Si 1.86798 * 120.00752 * 184.72714 * 23 21 20 26 26 H 1.48511 * 109.46788 * 4.99406 * 25 23 21 27 27 H 1.48500 * 109.47128 * 124.99103 * 25 23 21 28 28 H 1.48502 * 109.47212 * 244.99703 * 25 23 21 29 29 H 1.08995 * 109.47418 * 185.01049 * 1 2 3 30 30 H 1.08998 * 109.47525 * 305.01766 * 1 2 3 31 31 H 1.09006 * 109.46500 * 65.01233 * 1 2 3 32 32 H 1.00906 * 110.99754 * 60.51287 * 4 2 1 33 33 H 1.00903 * 111.00364 * 184.46256 * 4 2 1 34 34 H 1.08992 * 109.50346 * 65.47846 * 7 5 2 35 35 H 1.08994 * 109.49580 * 305.37434 * 7 5 2 36 36 H 1.08989 * 109.45928 * 181.37912 * 8 7 5 37 37 H 1.08993 * 109.45872 * 301.35792 * 8 7 5 38 38 H 1.09003 * 109.49700 * 58.58001 * 9 8 7 39 39 H 1.09000 * 109.49548 * 178.67719 * 9 8 7 40 40 H 1.08989 * 109.60093 * 294.86399 * 10 9 8 41 41 H 1.09002 * 109.69708 * 174.50761 * 10 9 8 42 42 H 1.07998 * 119.87814 * 359.97040 * 16 15 12 43 43 H 1.07998 * 119.75106 * 180.25663 * 17 16 15 44 44 H 1.08006 * 119.87612 * 179.75355 * 18 17 16 45 45 H 1.07995 * 120.13035 * 180.02562 * 19 18 17 46 46 H 0.97002 * 120.00060 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 2.0401 -0.7213 -1.2492 6 1 1.6380 -0.2382 -2.1397 7 6 1.5943 -2.1865 -1.2141 8 6 2.2196 -2.9341 -2.3941 9 6 3.7449 -2.8903 -2.2770 10 6 4.2150 -1.4330 -2.3245 11 7 3.5082 -0.6743 -1.2836 12 16 4.3501 0.2166 -0.1702 13 8 3.3821 0.9232 0.5933 14 8 5.3051 -0.6626 0.4078 15 6 5.2661 1.4314 -1.0591 16 6 4.8480 2.7427 -1.0673 17 6 5.5699 3.7014 -1.7610 18 6 6.7129 3.3502 -2.4630 19 6 7.1464 2.0443 -2.4732 20 6 6.4246 1.0635 -1.7678 21 6 6.8607 -0.2814 -1.7708 22 1 6.6248 -0.9275 -0.9381 23 6 7.5981 -0.7756 -2.8526 24 7 7.9634 0.0292 -3.8173 25 14 8.0610 -2.5841 -2.9195 26 1 7.4308 -3.2987 -1.7803 27 1 7.5827 -3.1705 -4.1972 28 1 9.5372 -2.7208 -2.8338 29 1 -0.3634 -1.0237 0.0897 30 1 -0.3634 0.5897 0.8416 31 1 -0.3632 0.4341 -0.9316 32 1 1.7029 -1.6503 1.2186 33 1 3.0256 -0.6429 1.2603 34 1 0.5079 -2.2381 -1.2853 35 1 1.9203 -2.6436 -0.2800 36 1 1.8845 -3.9712 -2.3856 37 1 1.9133 -2.4611 -3.3271 38 1 4.0504 -3.3407 -1.3326 39 1 4.1893 -3.4428 -3.1048 40 1 3.9904 -1.0081 -3.3027 41 1 5.2890 -1.3873 -2.1442 42 1 3.9564 3.0264 -0.5280 43 1 5.2368 4.7287 -1.7587 44 1 7.2655 4.1047 -3.0033 45 1 8.0372 1.7731 -3.0203 46 1 8.4743 -0.3133 -4.5673 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601339422.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:30 Heat of formation + Delta-G solvation = -16.457240 kcal Electronic energy + Delta-G solvation = -30313.548282 eV Core-core repulsion = 26524.103639 eV Total energy + Delta-G solvation = -3789.444643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.49431 -39.49874 -38.53881 -37.04952 -35.78651 -35.62437 -33.34686 -32.07399 -31.36281 -31.06731 -29.64548 -27.48111 -25.31650 -24.90285 -23.42240 -22.92943 -21.89364 -21.22675 -19.84588 -19.54229 -18.53248 -17.75606 -17.39620 -17.05753 -16.69140 -16.06200 -15.86978 -15.63793 -15.37268 -15.24112 -15.10949 -14.71888 -14.61088 -14.52470 -14.34525 -13.84133 -13.70962 -13.47793 -13.02338 -13.00036 -12.91903 -12.87741 -12.77476 -12.57500 -12.37974 -12.19138 -12.10438 -12.08108 -11.89489 -11.75124 -11.58918 -11.49580 -11.10807 -10.83567 -10.54131 -9.90314 -9.72008 -9.48191 -9.40066 -8.70285 -6.67428 -0.23609 0.49353 0.95995 1.34040 1.43060 1.50264 2.13153 2.23999 2.59102 2.82716 3.39851 3.48315 3.74260 3.78676 3.98695 4.01958 4.21744 4.25777 4.29994 4.40264 4.45361 4.49896 4.62747 4.68712 4.80538 4.83986 4.93069 4.96116 5.00669 5.04236 5.07967 5.17484 5.21037 5.23498 5.31027 5.39570 5.41340 5.48083 5.53221 5.58864 5.69972 5.88281 5.93558 6.02484 6.11646 6.17477 6.55727 6.63973 6.67624 6.84019 8.12509 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011831 B = 0.006952 C = 0.005053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.045350 B = 4026.477327 C = 5540.055302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.047 3.953 3 H 0.128 0.872 4 N -0.830 5.830 5 C 0.112 3.888 6 H 0.085 0.915 7 C -0.126 4.126 8 C -0.110 4.110 9 C -0.135 4.135 10 C 0.089 3.911 11 N -0.986 5.986 12 S 2.693 3.307 13 O -0.968 6.968 14 O -1.004 7.004 15 C -0.794 4.794 16 C -0.017 4.017 17 C -0.250 4.250 18 C -0.080 4.080 19 C -0.198 4.198 20 C 0.149 3.851 21 C -0.495 4.495 22 H 0.118 0.882 23 C 0.046 3.954 24 N -0.801 5.801 25 Si 0.953 3.047 26 H -0.253 1.253 27 H -0.244 1.244 28 H -0.260 1.260 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.330 0.670 33 H 0.309 0.691 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.126 0.874 44 H 0.121 0.879 45 H 0.142 0.858 46 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.356 -5.631 -2.270 12.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.066 4.066 3 H 0.145 0.855 4 N -0.371 5.371 5 C 0.004 3.996 6 H 0.102 0.898 7 C -0.165 4.165 8 C -0.147 4.147 9 C -0.175 4.175 10 C -0.035 4.035 11 N -0.825 5.825 12 S 2.795 3.205 13 O -0.956 6.956 14 O -0.993 6.993 15 C -0.888 4.888 16 C -0.037 4.037 17 C -0.270 4.270 18 C -0.099 4.099 19 C -0.218 4.218 20 C 0.145 3.855 21 C -0.523 4.523 22 H 0.135 0.865 23 C -0.172 4.172 24 N -0.425 5.425 25 Si 0.772 3.228 26 H -0.176 1.176 27 H -0.168 1.168 28 H -0.184 1.184 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.145 0.855 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.077 0.923 36 H 0.102 0.898 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.142 0.858 43 H 0.144 0.856 44 H 0.139 0.861 45 H 0.159 0.841 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.592 -5.204 -1.172 11.860 hybrid contribution 1.582 -0.443 -1.397 2.157 sum -9.011 -5.647 -2.569 10.940 Atomic orbital electron populations 1.21781 0.91894 1.02863 1.02568 1.22766 0.97259 1.01469 0.85126 0.85532 1.59263 1.15482 1.19924 1.42471 1.22246 0.77952 0.98428 1.00972 0.89750 1.22002 1.01916 0.93459 0.99168 1.21458 0.93603 1.01217 0.98448 1.21945 0.97871 0.95282 1.02355 1.22245 0.99198 0.91741 0.90296 1.57504 1.14675 1.62469 1.47823 1.01628 0.71855 0.73624 0.73430 1.93575 1.55862 1.75624 1.70571 1.93407 1.63038 1.66556 1.76346 1.30214 1.14877 1.12239 1.31462 1.20553 0.97201 0.91643 0.94260 1.20952 1.00252 0.99153 1.06641 1.21360 0.95850 0.96222 0.96452 1.22301 1.02736 0.92287 1.04458 1.17492 0.87655 0.93584 0.86780 1.20858 1.29130 0.96587 1.05683 0.86491 1.26775 0.92072 1.04649 0.93714 1.69724 1.26582 1.38125 1.08062 0.85563 0.79872 0.76658 0.80719 1.17565 1.16770 1.18441 0.91304 0.92239 0.90618 0.85483 0.87141 0.87909 0.92294 0.89822 0.91163 0.92529 0.89963 0.92505 0.87538 0.85810 0.85572 0.86071 0.84127 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.08 71.98 0.65 -2.27 16 2 C 0.05 1.42 2.39 44.91 0.11 1.53 16 3 H 0.13 4.55 5.30 -63.23 -0.34 4.21 16 4 N -0.83 -27.53 8.52 -168.68 -1.44 -28.97 16 5 C 0.11 3.19 2.77 44.98 0.12 3.31 16 6 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 7 C -0.13 -2.83 4.68 30.68 0.14 -2.69 16 8 C -0.11 -2.39 5.89 30.62 0.18 -2.21 16 9 C -0.14 -3.86 6.08 30.67 0.19 -3.67 16 10 C 0.09 3.24 6.24 86.36 0.54 3.78 16 11 N -0.99 -35.68 3.25 -490.79 -1.60 -37.27 16 12 S 2.69 117.50 3.56 -56.49 -0.20 117.30 16 13 O -0.97 -41.06 9.51 -128.00 -1.22 -42.28 16 14 O -1.00 -50.00 14.57 -128.00 -1.86 -51.87 16 15 C -0.79 -38.49 5.91 22.73 0.13 -38.35 16 16 C -0.02 -0.76 9.53 22.22 0.21 -0.55 16 17 C -0.25 -10.66 10.05 22.46 0.23 -10.44 16 18 C -0.08 -3.57 10.02 22.22 0.22 -3.35 16 19 C -0.20 -9.98 8.78 22.73 0.20 -9.78 16 20 C 0.15 7.75 5.63 -21.29 -0.12 7.63 16 21 C -0.49 -25.05 5.30 23.46 0.12 -24.93 16 22 H 0.12 6.16 4.41 -2.91 -0.01 6.15 16 23 C 0.05 2.12 5.21 85.26 0.44 2.57 16 24 N -0.80 -37.23 10.17 21.83 0.22 -37.01 16 25 Si 0.95 34.99 29.10 68.60 2.00 36.98 16 26 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 27 H -0.24 -8.05 7.11 99.48 0.71 -7.34 16 28 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 29 H 0.07 1.25 6.91 -2.39 -0.02 1.23 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.33 9.20 6.95 -89.69 -0.62 8.58 16 33 H 0.31 11.89 4.78 -108.55 -0.52 11.38 16 34 H 0.10 1.70 6.93 -2.39 -0.02 1.69 16 35 H 0.06 1.40 6.35 -2.39 -0.02 1.38 16 36 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.11 4.50 2.72 -2.39 -0.01 4.49 16 42 H 0.12 5.01 7.37 -2.91 -0.02 4.99 16 43 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 44 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 45 H 0.14 7.24 5.53 -2.91 -0.02 7.22 16 46 H 0.30 12.18 8.30 -92.71 -0.77 11.41 16 Total: -1.00 -60.78 344.32 -1.16 -61.93 By element: Atomic # 1 Polarization: 61.03 SS G_CDS: -0.43 Total: 60.60 kcal Atomic # 6 Polarization: -82.79 SS G_CDS: 3.38 Total: -79.42 kcal Atomic # 7 Polarization: -100.44 SS G_CDS: -2.81 Total: -103.25 kcal Atomic # 8 Polarization: -91.06 SS G_CDS: -3.08 Total: -94.14 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.00 Total: 36.98 kcal Atomic # 16 Polarization: 117.50 SS G_CDS: -0.20 Total: 117.30 kcal Total: -60.78 -1.16 -61.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601339422.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.475 kcal (2) G-P(sol) polarization free energy of solvation -60.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds