Wall clock time and date at job start Tue Mar 31 2020 20:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46894 * 2 1 4 4 N 1.46898 * 109.47262 * 120.00145 * 2 1 3 5 5 C 1.53001 * 109.46882 * 240.00318 * 2 1 3 6 6 H 1.09001 * 109.58619 * 180.39284 * 5 2 1 7 7 C 1.53187 * 109.58594 * 300.81655 * 5 2 1 8 8 C 1.53039 * 109.31323 * 174.42390 * 7 5 2 9 9 C 1.53043 * 109.53597 * 298.63286 * 8 7 5 10 10 C 1.52758 * 109.38228 * 61.24209 * 9 8 7 11 11 N 1.46926 * 109.58527 * 60.10452 * 5 2 1 12 12 S 1.65602 * 120.63207 * 6.58531 * 11 5 2 13 13 O 1.42097 * 106.40066 * 14.45816 * 12 11 5 14 14 O 1.42107 * 106.39903 * 241.53905 * 12 11 5 15 15 C 1.76202 * 107.21975 * 127.99963 * 12 11 5 16 16 C 1.37637 * 120.12793 * 115.63774 * 15 12 11 17 17 C 1.38609 * 120.24626 * 179.97438 * 16 15 12 18 18 C 1.38660 * 120.50622 * 0.02816 * 17 16 15 19 19 C 1.37603 * 120.24175 * 359.66810 * 18 17 16 20 20 C 1.40698 * 120.12532 * 295.62085 * 15 12 11 21 21 C 1.41395 * 120.24794 * 0.02562 * 20 15 12 22 22 H 1.08004 * 119.99595 * 326.13175 * 21 20 15 23 23 C 1.39944 * 120.00085 * 146.13147 * 21 20 15 24 24 N 1.30823 * 119.99744 * 177.89641 * 23 21 20 25 25 Si 1.86792 * 120.00025 * 357.88896 * 23 21 20 26 26 H 1.48503 * 109.46914 * 87.25173 * 25 23 21 27 27 H 1.48505 * 109.47282 * 207.24498 * 25 23 21 28 28 H 1.48492 * 109.47653 * 327.24931 * 25 23 21 29 29 H 1.09004 * 109.47020 * 188.55913 * 1 2 3 30 30 H 1.09005 * 109.46740 * 308.55045 * 1 2 3 31 31 H 1.09001 * 109.47312 * 68.55215 * 1 2 3 32 32 H 1.00906 * 110.99690 * 64.77513 * 4 2 1 33 33 H 1.00903 * 110.99719 * 188.72199 * 4 2 1 34 34 H 1.08995 * 109.49977 * 294.37539 * 7 5 2 35 35 H 1.09004 * 109.49828 * 54.46938 * 7 5 2 36 36 H 1.08997 * 109.46184 * 58.65376 * 8 7 5 37 37 H 1.08997 * 109.46323 * 178.61836 * 8 7 5 38 38 H 1.09004 * 109.49777 * 181.31462 * 9 8 7 39 39 H 1.08992 * 109.50068 * 301.38153 * 9 8 7 40 40 H 1.08999 * 109.51058 * 185.70613 * 10 9 8 41 41 H 1.09006 * 109.43597 * 65.42094 * 10 9 8 42 42 H 1.07998 * 119.87557 * 0.02562 * 16 15 12 43 43 H 1.08000 * 119.75065 * 180.02562 * 17 16 15 44 44 H 1.07997 * 119.87705 * 179.97438 * 18 17 16 45 45 H 1.08004 * 120.11958 * 180.29881 * 19 18 17 46 46 H 0.97001 * 119.99942 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0399 -0.7212 -1.2493 6 1 3.1299 -0.7284 -1.2477 7 6 1.5140 -2.1599 -1.2624 8 6 1.9107 -2.8319 -2.5788 9 6 1.2789 -2.0760 -3.7500 10 6 1.7972 -0.6392 -3.7648 11 7 1.5536 -0.0290 -2.4506 12 16 0.7404 1.4082 -2.3253 13 8 0.9621 1.8807 -1.0036 14 8 -0.5556 1.1841 -2.8634 15 6 1.5355 2.5531 -3.4030 16 6 0.8588 3.0672 -4.4856 17 6 1.4818 3.9684 -5.3347 18 6 2.7913 4.3621 -5.1051 19 6 3.4850 3.8658 -4.0253 20 6 2.8646 2.9457 -3.1599 21 6 3.5698 2.4241 -2.0509 22 1 3.0453 2.2020 -1.1333 23 6 4.9475 2.1955 -2.1423 24 7 5.6072 1.7518 -1.1034 25 14 5.8442 2.5238 -3.7477 26 1 6.2693 3.9459 -3.7953 27 1 7.0394 1.6468 -3.8354 28 1 4.9371 2.2399 -4.8885 29 1 -0.3633 -1.0163 0.1530 30 1 -0.3633 0.6405 0.8038 31 1 -0.3634 0.3758 -0.9565 32 1 1.7617 -1.6679 1.1844 33 1 3.0181 -0.5840 1.2972 34 1 1.9450 -2.7124 -0.4275 35 1 0.4278 -2.1511 -1.1712 36 1 2.9958 -2.8183 -2.6810 37 1 1.5589 -3.8635 -2.5804 38 1 1.5426 -2.5689 -4.6858 39 1 0.1950 -2.0685 -3.6358 40 1 1.2739 -0.0712 -4.5340 41 1 2.8671 -0.6417 -3.9738 42 1 -0.1616 2.7678 -4.6738 43 1 0.9431 4.3671 -6.1816 44 1 3.2669 5.0646 -5.7734 45 1 4.5034 4.1775 -3.8456 46 1 6.5622 1.5938 -1.1666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601339423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:34 Heat of formation + Delta-G solvation = -18.438038 kcal Electronic energy + Delta-G solvation = -30513.670481 eV Core-core repulsion = 26724.139944 eV Total energy + Delta-G solvation = -3789.530537 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -39.11427 -37.98631 -36.74240 -35.53030 -34.37000 -33.88096 -32.11855 -30.79839 -30.34836 -29.87574 -28.15349 -25.46112 -24.25567 -23.61988 -22.17968 -21.26610 -20.68802 -19.81121 -18.23229 -17.79671 -17.09390 -16.30216 -15.81570 -15.52699 -15.34628 -14.58072 -14.48965 -14.32496 -14.21108 -13.97426 -13.63806 -13.62357 -13.37002 -13.23689 -12.89632 -12.42402 -12.29514 -12.00142 -11.80928 -11.55995 -11.53506 -11.45480 -11.18914 -11.06223 -10.88350 -10.80687 -10.71329 -10.67986 -10.43408 -10.39275 -10.18583 -9.94415 -9.61677 -9.29865 -9.09719 -8.36724 -8.27301 -8.24795 -7.89028 -7.19701 -4.93364 1.38324 2.00291 2.44736 2.89664 2.99139 3.06478 3.70325 3.74161 4.20643 4.52548 4.85242 4.90107 5.01958 5.04968 5.09744 5.32875 5.39190 5.49718 5.62001 5.64451 5.75434 5.79260 5.84472 5.88275 5.89823 6.00309 6.08502 6.09867 6.15467 6.17847 6.21183 6.29326 6.37357 6.49706 6.57873 6.64629 6.81261 6.89291 6.99372 7.07201 7.14796 7.22195 7.35514 7.47568 7.65072 7.76523 7.93622 8.13047 8.24165 8.47804 9.77541 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.006954 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.632238 B = 4025.549300 C = 4719.172503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.041 3.959 3 H 0.172 0.828 4 N -0.834 5.834 5 C 0.134 3.866 6 H 0.078 0.922 7 C -0.135 4.135 8 C -0.113 4.113 9 C -0.132 4.132 10 C 0.131 3.869 11 N -0.981 5.981 12 S 2.706 3.294 13 O -0.960 6.960 14 O -0.998 6.998 15 C -0.772 4.772 16 C 0.012 3.988 17 C -0.254 4.254 18 C -0.045 4.045 19 C -0.234 4.234 20 C 0.167 3.833 21 C -0.451 4.451 22 H 0.129 0.871 23 C 0.089 3.911 24 N -0.784 5.784 25 Si 0.907 3.093 26 H -0.268 1.268 27 H -0.290 1.290 28 H -0.240 1.240 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.022 0.978 32 H 0.324 0.676 33 H 0.344 0.656 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.852 -7.454 -3.013 8.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.071 4.071 3 H 0.188 0.812 4 N -0.364 5.364 5 C 0.025 3.975 6 H 0.096 0.904 7 C -0.174 4.174 8 C -0.151 4.151 9 C -0.171 4.171 10 C 0.005 3.995 11 N -0.819 5.819 12 S 2.808 3.192 13 O -0.949 6.949 14 O -0.988 6.988 15 C -0.865 4.865 16 C -0.008 4.008 17 C -0.274 4.274 18 C -0.064 4.064 19 C -0.253 4.253 20 C 0.161 3.839 21 C -0.478 4.478 22 H 0.146 0.854 23 C -0.133 4.133 24 N -0.406 5.406 25 Si 0.734 3.266 26 H -0.194 1.194 27 H -0.218 1.218 28 H -0.163 1.163 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.136 0.864 33 H 0.157 0.843 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.084 0.916 42 H 0.131 0.869 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.123 0.877 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.853 -6.887 -1.879 7.687 hybrid contribution 1.766 -0.138 -2.055 2.714 sum -1.086 -7.025 -3.935 8.125 Atomic orbital electron populations 1.21987 0.95542 1.00293 1.00267 1.23265 0.95478 1.02710 0.85667 0.81158 1.59107 1.19750 1.17199 1.40327 1.21923 0.99308 0.91481 0.84774 0.90428 1.22047 1.01837 0.96098 0.97440 1.21418 1.00635 0.98278 0.94740 1.21815 1.01154 0.95808 0.98334 1.21104 1.01019 0.93627 0.83721 1.57382 1.75437 1.38177 1.10872 1.01347 0.72123 0.72386 0.73363 1.93466 1.85233 1.81580 1.34664 1.93457 1.38168 1.85765 1.81382 1.29941 1.10053 1.27247 1.19290 1.20436 0.97157 0.92281 0.90914 1.20524 0.96314 1.07258 1.03308 1.20836 0.94373 0.96142 0.95036 1.21252 1.00321 1.03559 1.00205 1.17116 0.89327 0.87142 0.90266 1.20315 0.93403 1.34249 0.99865 0.85351 1.26146 0.97359 0.91585 0.98188 1.69586 1.10570 1.30211 1.30241 0.86462 0.78440 0.78375 0.83275 1.19402 1.21798 1.16310 0.93781 0.91001 0.95922 0.86351 0.84291 0.91618 0.91193 0.91966 0.92340 0.91343 0.91405 0.90600 0.91601 0.86882 0.87976 0.88192 0.87706 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.22 7.37 37.16 0.27 -1.95 16 2 C 0.04 0.75 2.66 -67.71 -0.18 0.57 16 3 H 0.17 3.71 4.16 -56.27 -0.23 3.48 16 4 N -0.83 -12.81 9.22 -4.67 -0.04 -12.85 16 5 C 0.13 2.25 2.92 -67.60 -0.20 2.05 16 6 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 7 C -0.13 -1.83 4.68 -26.61 -0.12 -1.95 16 8 C -0.11 -1.39 5.89 -26.69 -0.16 -1.55 16 9 C -0.13 -1.74 6.06 -26.83 -0.16 -1.90 16 10 C 0.13 2.13 6.27 -3.93 -0.02 2.10 16 11 N -0.98 -18.01 3.05 -106.71 -0.33 -18.34 16 12 S 2.71 57.88 2.80 -107.50 -0.30 57.58 16 13 O -0.96 -21.85 9.35 -57.17 -0.53 -22.39 16 14 O -1.00 -22.49 15.95 -57.17 -0.91 -23.40 16 15 C -0.77 -17.52 5.59 -38.87 -0.22 -17.74 16 16 C 0.01 0.25 9.53 -39.66 -0.38 -0.12 16 17 C -0.25 -5.07 10.05 -39.29 -0.39 -5.47 16 18 C -0.05 -0.92 10.02 -39.66 -0.40 -1.32 16 19 C -0.23 -5.30 6.81 -38.87 -0.26 -5.57 16 20 C 0.17 3.97 5.19 -106.83 -0.55 3.41 16 21 C -0.45 -11.00 8.69 -37.74 -0.33 -11.33 16 22 H 0.13 3.31 4.91 -52.48 -0.26 3.05 16 23 C 0.09 2.09 5.51 -17.34 -0.10 2.00 16 24 N -0.78 -18.35 13.93 55.55 0.77 -17.58 16 25 Si 0.91 18.83 24.35 -169.99 -4.14 14.69 16 26 H -0.27 -5.47 6.67 56.52 0.38 -5.09 16 27 H -0.29 -5.82 7.11 56.52 0.40 -5.42 16 28 H -0.24 -5.05 6.38 56.52 0.36 -4.69 16 29 H 0.04 0.68 6.79 -51.93 -0.35 0.33 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.02 0.44 3.65 -26.36 -0.10 0.35 16 32 H 0.32 4.19 7.17 -39.29 -0.28 3.91 16 33 H 0.34 5.16 9.08 -39.29 -0.36 4.80 16 34 H 0.07 0.76 6.87 -51.93 -0.36 0.41 16 35 H 0.07 0.98 6.34 -51.93 -0.33 0.65 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.08 1.22 7.83 -51.93 -0.41 0.82 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.11 2.22 7.33 -52.49 -0.38 1.84 16 43 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 45 H 0.11 2.31 3.97 -52.48 -0.21 2.11 16 46 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -27.26 345.55 -9.75 -37.00 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -6.27 Total: 18.84 kcal Atomic # 6 Polarization: -35.57 SS G_CDS: -3.20 Total: -38.77 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: 0.40 Total: -48.77 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -1.45 Total: -45.79 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.14 Total: 14.69 kcal Atomic # 16 Polarization: 57.88 SS G_CDS: -0.30 Total: 57.58 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.26 -9.75 -37.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601339423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.563 kcal (2) G-P(sol) polarization free energy of solvation -27.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds