Wall clock time and date at job start Tue Mar 31 2020 20:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46894 * 2 1 4 4 N 1.46898 * 109.47262 * 120.00145 * 2 1 3 5 5 C 1.53001 * 109.46882 * 240.00318 * 2 1 3 6 6 H 1.09001 * 109.58619 * 180.39284 * 5 2 1 7 7 C 1.53187 * 109.58594 * 300.81655 * 5 2 1 8 8 C 1.53039 * 109.31323 * 174.42390 * 7 5 2 9 9 C 1.53043 * 109.53597 * 298.63286 * 8 7 5 10 10 C 1.52758 * 109.38228 * 61.24209 * 9 8 7 11 11 N 1.46926 * 109.58527 * 60.10452 * 5 2 1 12 12 S 1.65602 * 120.63207 * 6.58531 * 11 5 2 13 13 O 1.42097 * 106.40066 * 14.45816 * 12 11 5 14 14 O 1.42107 * 106.39903 * 241.53905 * 12 11 5 15 15 C 1.76202 * 107.21975 * 127.99963 * 12 11 5 16 16 C 1.37637 * 120.12793 * 115.63774 * 15 12 11 17 17 C 1.38609 * 120.24626 * 179.97438 * 16 15 12 18 18 C 1.38660 * 120.50622 * 0.02816 * 17 16 15 19 19 C 1.37603 * 120.24175 * 359.66810 * 18 17 16 20 20 C 1.40698 * 120.12532 * 295.62085 * 15 12 11 21 21 C 1.41395 * 120.24794 * 0.02562 * 20 15 12 22 22 H 1.08004 * 119.99595 * 326.13175 * 21 20 15 23 23 C 1.39944 * 120.00085 * 146.13147 * 21 20 15 24 24 N 1.30823 * 119.99744 * 177.89641 * 23 21 20 25 25 Si 1.86792 * 120.00025 * 357.88896 * 23 21 20 26 26 H 1.48503 * 109.46914 * 87.25173 * 25 23 21 27 27 H 1.48505 * 109.47282 * 207.24498 * 25 23 21 28 28 H 1.48492 * 109.47653 * 327.24931 * 25 23 21 29 29 H 1.09004 * 109.47020 * 188.55913 * 1 2 3 30 30 H 1.09005 * 109.46740 * 308.55045 * 1 2 3 31 31 H 1.09001 * 109.47312 * 68.55215 * 1 2 3 32 32 H 1.00906 * 110.99690 * 64.77513 * 4 2 1 33 33 H 1.00903 * 110.99719 * 188.72199 * 4 2 1 34 34 H 1.08995 * 109.49977 * 294.37539 * 7 5 2 35 35 H 1.09004 * 109.49828 * 54.46938 * 7 5 2 36 36 H 1.08997 * 109.46184 * 58.65376 * 8 7 5 37 37 H 1.08997 * 109.46323 * 178.61836 * 8 7 5 38 38 H 1.09004 * 109.49777 * 181.31462 * 9 8 7 39 39 H 1.08992 * 109.50068 * 301.38153 * 9 8 7 40 40 H 1.08999 * 109.51058 * 185.70613 * 10 9 8 41 41 H 1.09006 * 109.43597 * 65.42094 * 10 9 8 42 42 H 1.07998 * 119.87557 * 0.02562 * 16 15 12 43 43 H 1.08000 * 119.75065 * 180.02562 * 17 16 15 44 44 H 1.07997 * 119.87705 * 179.97438 * 18 17 16 45 45 H 1.08004 * 120.11958 * 180.29881 * 19 18 17 46 46 H 0.97001 * 119.99942 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0399 -0.7212 -1.2493 6 1 3.1299 -0.7284 -1.2477 7 6 1.5140 -2.1599 -1.2624 8 6 1.9107 -2.8319 -2.5788 9 6 1.2789 -2.0760 -3.7500 10 6 1.7972 -0.6392 -3.7648 11 7 1.5536 -0.0290 -2.4506 12 16 0.7404 1.4082 -2.3253 13 8 0.9621 1.8807 -1.0036 14 8 -0.5556 1.1841 -2.8634 15 6 1.5355 2.5531 -3.4030 16 6 0.8588 3.0672 -4.4856 17 6 1.4818 3.9684 -5.3347 18 6 2.7913 4.3621 -5.1051 19 6 3.4850 3.8658 -4.0253 20 6 2.8646 2.9457 -3.1599 21 6 3.5698 2.4241 -2.0509 22 1 3.0453 2.2020 -1.1333 23 6 4.9475 2.1955 -2.1423 24 7 5.6072 1.7518 -1.1034 25 14 5.8442 2.5238 -3.7477 26 1 6.2693 3.9459 -3.7953 27 1 7.0394 1.6468 -3.8354 28 1 4.9371 2.2399 -4.8885 29 1 -0.3633 -1.0163 0.1530 30 1 -0.3633 0.6405 0.8038 31 1 -0.3634 0.3758 -0.9565 32 1 1.7617 -1.6679 1.1844 33 1 3.0181 -0.5840 1.2972 34 1 1.9450 -2.7124 -0.4275 35 1 0.4278 -2.1511 -1.1712 36 1 2.9958 -2.8183 -2.6810 37 1 1.5589 -3.8635 -2.5804 38 1 1.5426 -2.5689 -4.6858 39 1 0.1950 -2.0685 -3.6358 40 1 1.2739 -0.0712 -4.5340 41 1 2.8671 -0.6417 -3.9738 42 1 -0.1616 2.7678 -4.6738 43 1 0.9431 4.3671 -6.1816 44 1 3.2669 5.0646 -5.7734 45 1 4.5034 4.1775 -3.8456 46 1 6.5622 1.5938 -1.1666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601339423.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:33 Heat of formation + Delta-G solvation = -37.506972 kcal Electronic energy + Delta-G solvation = -30514.497372 eV Core-core repulsion = 26724.139944 eV Total energy + Delta-G solvation = -3790.357428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.44155 -39.67322 -38.33758 -37.16233 -35.82028 -35.60944 -33.36522 -32.50150 -31.97696 -31.14589 -29.55565 -27.19328 -25.56583 -24.83899 -23.84705 -22.95935 -21.96530 -21.16654 -19.79147 -19.54260 -18.65540 -17.82957 -17.35647 -17.03287 -16.87485 -16.12064 -15.90292 -15.80792 -15.65661 -15.32644 -15.23258 -14.96355 -14.70739 -14.60806 -14.50714 -14.09838 -13.63474 -13.59326 -13.31990 -13.15938 -13.00223 -12.83292 -12.81532 -12.61470 -12.51465 -12.34528 -12.14620 -12.02936 -11.82050 -11.64822 -11.56813 -11.41671 -11.26594 -10.93864 -10.63251 -9.97292 -9.72732 -9.60097 -9.55794 -8.93607 -6.72901 -0.23496 0.30909 0.73892 1.22547 1.33416 1.41495 2.03535 2.20307 2.50177 2.88397 3.27001 3.59218 3.60900 3.70122 3.92098 4.02960 4.10450 4.15231 4.23638 4.25108 4.33479 4.42522 4.47058 4.57507 4.62169 4.62979 4.70272 4.77716 4.84052 4.88862 4.98737 5.07628 5.10511 5.19510 5.21103 5.25080 5.32160 5.41838 5.49651 5.52915 5.62587 5.68384 5.77447 5.83620 6.07346 6.30602 6.32293 6.50780 6.68754 6.75583 8.08186 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.006954 C = 0.005932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.632238 B = 4025.549300 C = 4719.172503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.045 3.955 3 H 0.132 0.868 4 N -0.831 5.831 5 C 0.136 3.864 6 H 0.061 0.939 7 C -0.131 4.131 8 C -0.111 4.111 9 C -0.127 4.127 10 C 0.120 3.880 11 N -0.979 5.979 12 S 2.712 3.288 13 O -0.981 6.981 14 O -1.014 7.014 15 C -0.787 4.787 16 C -0.006 4.006 17 C -0.244 4.244 18 C -0.043 4.043 19 C -0.259 4.259 20 C 0.151 3.849 21 C -0.474 4.474 22 H 0.103 0.897 23 C 0.062 3.938 24 N -0.813 5.813 25 Si 0.950 3.050 26 H -0.261 1.261 27 H -0.279 1.279 28 H -0.245 1.245 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.005 0.995 32 H 0.341 0.659 33 H 0.346 0.654 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.125 0.875 43 H 0.140 0.860 44 H 0.139 0.861 45 H 0.108 0.892 46 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.846 -8.748 -4.932 10.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.069 4.069 3 H 0.148 0.852 4 N -0.362 5.362 5 C 0.028 3.972 6 H 0.079 0.921 7 C -0.170 4.170 8 C -0.148 4.148 9 C -0.166 4.166 10 C -0.006 4.006 11 N -0.818 5.818 12 S 2.813 3.187 13 O -0.971 6.971 14 O -1.004 7.004 15 C -0.880 4.880 16 C -0.026 4.026 17 C -0.263 4.263 18 C -0.061 4.061 19 C -0.278 4.278 20 C 0.147 3.853 21 C -0.502 4.502 22 H 0.120 0.880 23 C -0.157 4.157 24 N -0.436 5.436 25 Si 0.775 3.225 26 H -0.187 1.187 27 H -0.206 1.206 28 H -0.168 1.168 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.023 0.977 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.143 0.857 43 H 0.158 0.842 44 H 0.157 0.843 45 H 0.125 0.875 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.850 -8.176 -3.798 9.454 hybrid contribution 1.663 0.318 -1.481 2.250 sum -1.187 -7.857 -5.279 9.540 Atomic orbital electron populations 1.21966 0.95568 1.01628 0.98873 1.22896 0.95396 1.01257 0.87317 0.85177 1.58997 1.19911 1.18334 1.38982 1.21930 0.98331 0.93353 0.83626 0.92109 1.22052 1.01761 0.93697 0.99465 1.21438 1.00687 0.99426 0.93258 1.21817 1.00803 0.93734 1.00260 1.21365 1.01100 0.95620 0.82477 1.57203 1.75211 1.37121 1.12295 1.01100 0.72044 0.72849 0.72694 1.93501 1.85496 1.82424 1.35645 1.93422 1.39202 1.86188 1.81632 1.30242 1.09937 1.27930 1.19911 1.20765 0.97908 0.92890 0.90990 1.21012 0.96282 1.05560 1.03495 1.21294 0.94439 0.95841 0.94545 1.21437 1.00955 1.04117 1.01286 1.17291 0.89915 0.87580 0.90550 1.20189 0.94133 1.36318 0.99599 0.87970 1.26633 0.97464 0.91249 1.00356 1.69605 1.11212 1.31357 1.31432 0.85792 0.77710 0.78698 0.80288 1.18729 1.20587 1.16832 0.90949 0.91975 0.97691 0.84386 0.84083 0.89233 0.91213 0.91915 0.89436 0.88598 0.91784 0.91102 0.91820 0.85707 0.84243 0.84333 0.87490 0.89082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 7.37 71.98 0.53 -3.96 16 2 C 0.04 1.66 2.66 44.92 0.12 1.78 16 3 H 0.13 6.09 4.16 -71.11 -0.30 5.79 16 4 N -0.83 -25.52 9.22 -168.67 -1.56 -27.07 16 5 C 0.14 4.61 2.92 44.97 0.13 4.74 16 6 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 7 C -0.13 -3.28 4.68 30.67 0.14 -3.14 16 8 C -0.11 -2.41 5.89 30.62 0.18 -2.23 16 9 C -0.13 -3.07 6.06 30.53 0.19 -2.88 16 10 C 0.12 3.83 6.27 86.22 0.54 4.37 16 11 N -0.98 -36.52 3.05 -491.54 -1.50 -38.03 16 12 S 2.71 119.91 2.80 -56.49 -0.16 119.76 16 13 O -0.98 -47.38 9.35 -128.00 -1.20 -48.58 16 14 O -1.01 -46.62 15.95 -128.00 -2.04 -48.66 16 15 C -0.79 -36.35 5.59 22.73 0.13 -36.22 16 16 C -0.01 -0.25 9.53 22.22 0.21 -0.04 16 17 C -0.24 -9.08 10.05 22.46 0.23 -8.85 16 18 C -0.04 -1.64 10.02 22.22 0.22 -1.42 16 19 C -0.26 -11.53 6.81 22.73 0.15 -11.37 16 20 C 0.15 7.35 5.19 -21.29 -0.11 7.24 16 21 C -0.47 -24.16 8.69 23.46 0.20 -23.95 16 22 H 0.10 5.66 4.91 -2.91 -0.01 5.65 16 23 C 0.06 2.99 5.51 85.26 0.47 3.46 16 24 N -0.81 -39.26 13.93 21.83 0.30 -38.95 16 25 Si 0.95 38.49 24.35 68.60 1.67 40.16 16 26 H -0.26 -10.21 6.67 99.48 0.66 -9.55 16 27 H -0.28 -10.62 7.11 99.48 0.71 -9.92 16 28 H -0.24 -10.01 6.38 99.48 0.63 -9.37 16 29 H 0.07 2.17 6.79 -2.38 -0.02 2.15 16 30 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 31 H 0.00 0.18 3.65 -18.65 -0.07 0.12 16 32 H 0.34 8.33 7.17 -89.69 -0.64 7.69 16 33 H 0.35 10.56 9.08 -89.69 -0.81 9.74 16 34 H 0.09 1.82 6.87 -2.39 -0.02 1.81 16 35 H 0.07 1.78 6.34 -2.38 -0.02 1.77 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.10 1.80 8.14 -2.38 -0.02 1.79 16 39 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.07 2.29 7.83 -2.39 -0.02 2.27 16 41 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 42 H 0.13 4.82 7.33 -2.91 -0.02 4.79 16 43 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 44 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 45 H 0.11 4.64 3.97 -2.91 -0.01 4.63 16 46 H 0.30 12.97 8.30 -92.71 -0.77 12.20 16 Total: -1.00 -61.05 345.55 -2.02 -63.08 By element: Atomic # 1 Polarization: 51.65 SS G_CDS: -0.88 Total: 50.77 kcal Atomic # 6 Polarization: -75.81 SS G_CDS: 3.34 Total: -72.47 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -2.75 Total: -104.05 kcal Atomic # 8 Polarization: -94.00 SS G_CDS: -3.24 Total: -97.23 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 1.67 Total: 40.16 kcal Atomic # 16 Polarization: 119.91 SS G_CDS: -0.16 Total: 119.76 kcal Total: -61.05 -2.02 -63.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601339423.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.568 kcal (2) G-P(sol) polarization free energy of solvation -61.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds