Wall clock time and date at job start Tue Mar 31 2020 20:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47594 * 2 1 4 4 C 1.53003 * 109.46948 * 239.99839 * 2 1 3 5 5 C 1.50705 * 109.46714 * 65.00412 * 4 2 1 6 6 H 1.07995 * 120.00204 * 359.97438 * 5 4 2 7 7 C 1.37886 * 119.99649 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99862 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00188 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47146 * 89.99712 * 9 7 5 11 11 H 1.48497 * 109.46751 * 210.00239 * 9 7 5 12 12 H 1.48504 * 109.46610 * 329.99584 * 9 7 5 13 13 C 1.52998 * 109.47208 * 120.00199 * 2 1 3 14 14 N 1.46500 * 109.47206 * 294.99908 * 13 2 1 15 15 C 1.39666 * 120.00031 * 179.97438 * 14 13 2 16 16 C 1.38938 * 120.07642 * 0.29658 * 15 14 13 17 17 C 1.38081 * 119.92462 * 180.27812 * 16 15 14 18 18 C 1.38308 * 120.07401 * 359.44415 * 17 16 15 19 19 C 1.38269 * 120.15155 * 0.25953 * 18 17 16 20 20 S 1.76199 * 119.96284 * 180.02562 * 19 18 17 21 21 O 1.42095 * 106.40174 * 203.53784 * 20 19 18 22 22 O 1.42096 * 106.40567 * 336.46431 * 20 19 18 23 23 N 1.65599 * 107.21542 * 89.99972 * 20 19 18 24 24 C 1.46509 * 120.00068 * 65.00019 * 23 20 19 25 25 C 1.52999 * 117.50059 * 213.74282 * 24 23 20 26 26 C 1.53000 * 117.49789 * 145.08058 * 24 23 20 27 27 C 1.38121 * 120.07065 * 0.02562 * 19 18 17 28 28 H 1.09005 * 109.47170 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46805 * 299.99972 * 1 2 3 30 30 H 1.08999 * 109.46804 * 59.99615 * 1 2 3 31 31 H 1.08997 * 109.47037 * 184.99751 * 4 2 1 32 32 H 1.08994 * 109.47747 * 305.00332 * 4 2 1 33 33 H 0.97002 * 120.00121 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46911 * 174.99620 * 13 2 1 35 35 H 1.09005 * 109.47072 * 54.99855 * 13 2 1 36 36 H 0.96998 * 119.99614 * 359.97438 * 14 13 2 37 37 H 1.07998 * 120.03480 * 0.02562 * 16 15 14 38 38 H 1.08002 * 119.96548 * 179.72945 * 17 16 15 39 39 H 1.08000 * 119.92840 * 180.27748 * 18 17 16 40 40 H 0.97001 * 120.00494 * 244.99769 * 23 20 19 41 41 H 1.09003 * 115.54654 * 359.41439 * 24 23 20 42 42 H 1.08998 * 117.49670 * 0.02562 * 25 24 23 43 43 H 1.08999 * 117.49560 * 145.01871 * 25 24 23 44 44 H 1.09000 * 117.50021 * 214.97376 * 26 24 23 45 45 H 1.08998 * 117.50031 * 359.97438 * 26 24 23 46 46 H 1.08006 * 120.03375 * 180.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4017 -3.7284 8 7 1.6449 0.2773 -4.7994 9 14 2.9635 -1.9884 -3.9029 10 1 2.0242 -3.1325 -4.0202 11 1 3.8124 -1.9180 -5.1192 12 1 3.8251 -2.1756 -2.7080 13 6 2.0400 -0.7213 1.2492 14 7 1.6525 0.0353 2.4424 15 6 2.0081 -0.4300 3.7103 16 6 2.7347 -1.6070 3.8416 17 6 3.0796 -2.0672 5.0970 18 6 2.7126 -1.3519 6.2224 19 6 1.9948 -0.1770 6.0951 20 16 1.5304 0.7307 7.5321 21 8 0.4004 1.5107 7.1662 22 8 1.5183 -0.1984 8.6071 23 7 2.7531 1.8005 7.8525 24 6 3.0503 2.8783 6.9056 25 6 4.5110 3.3110 6.7635 26 6 3.5099 4.2187 7.4826 27 6 1.6414 0.2859 4.8426 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.1263 -0.7995 -1.2056 32 1 1.6054 -1.7198 -1.2953 33 1 1.8921 -0.0456 -5.6801 34 1 3.1263 -0.7995 1.2054 35 1 1.6054 -1.7199 1.2951 36 1 1.1489 0.8593 2.3517 37 1 3.0258 -2.1634 2.9630 38 1 3.6406 -2.9843 5.2000 39 1 2.9875 -1.7116 7.2029 40 1 3.2726 1.7137 8.6670 41 1 2.4289 2.9022 6.0104 42 1 5.2508 2.7935 7.3741 43 1 4.8504 3.6199 5.7748 44 1 3.1913 5.1245 6.9667 45 1 3.5907 4.2989 8.5666 46 1 1.0811 1.2040 4.7438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602610201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:26 Heat of formation + Delta-G solvation = -32.762624 kcal Electronic energy + Delta-G solvation = -26533.326207 eV Core-core repulsion = 22743.174509 eV Total energy + Delta-G solvation = -3790.151698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.64818 -38.17279 -37.41093 -36.92470 -36.09220 -34.20529 -32.51717 -32.20529 -31.39139 -29.41331 -27.47603 -25.99428 -23.55717 -22.77333 -22.75563 -22.40628 -21.82792 -19.86521 -19.44683 -18.31499 -17.74845 -17.06276 -16.85878 -16.25389 -16.03915 -15.52134 -15.28598 -14.96753 -14.82411 -14.31721 -13.93927 -13.77509 -13.52943 -13.36230 -13.15221 -12.65837 -12.52412 -12.45786 -12.42286 -12.31551 -12.24841 -12.20636 -11.93107 -11.87658 -11.71403 -11.17213 -11.02880 -10.93602 -10.79220 -10.65111 -10.32785 -9.97210 -9.85488 -9.71004 -9.51154 -9.41369 -9.21514 -8.61802 -7.50602 -6.11808 -4.10245 0.10635 0.73220 1.37231 2.64895 3.24145 3.31349 3.32371 3.33805 3.43497 3.47799 3.65042 4.11045 4.37531 4.39549 4.48213 4.54085 4.61828 4.72933 4.93089 4.99761 5.20288 5.22538 5.26568 5.30699 5.37956 5.43804 5.50458 5.64811 5.69665 5.70406 5.77146 5.89466 5.96654 6.07480 6.15300 6.22449 6.24752 6.50012 6.51441 6.63449 6.73178 6.91915 7.10262 7.24547 7.29574 7.68570 7.71736 8.44738 8.92317 9.50075 11.01349 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017412 B = 0.002299 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.724297 B =12176.952828 C =12701.115586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.069 0.931 4 C -0.006 4.006 5 C -0.518 4.518 6 H 0.074 0.926 7 C 0.067 3.933 8 N -0.902 5.902 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.266 1.266 13 C 0.121 3.879 14 N -0.738 5.738 15 C 0.209 3.791 16 C -0.145 4.145 17 C -0.089 4.089 18 C -0.090 4.090 19 C -0.625 4.625 20 S 2.699 3.301 21 O -0.954 6.954 22 O -0.959 6.959 23 N -1.088 6.088 24 C 0.084 3.916 25 C -0.188 4.188 26 C -0.186 4.186 27 C -0.108 4.108 28 H 0.046 0.954 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.017 0.983 32 H 0.014 0.986 33 H 0.263 0.737 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.402 0.598 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.418 0.582 41 H 0.138 0.862 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 2.149 26.471 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 H 0.088 0.912 4 C -0.044 4.044 5 C -0.556 4.556 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.541 5.541 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.191 1.191 13 C -0.002 4.002 14 N -0.365 5.365 15 C 0.102 3.898 16 C -0.169 4.169 17 C -0.109 4.109 18 C -0.112 4.112 19 C -0.713 4.713 20 S 2.790 3.210 21 O -0.944 6.944 22 O -0.950 6.950 23 N -0.844 5.844 24 C -0.025 4.025 25 C -0.228 4.228 26 C -0.226 4.226 27 C -0.132 4.132 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.238 0.762 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.252 0.748 41 H 0.155 0.845 42 H 0.117 0.883 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.117 0.883 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.688 1.937 26.393 26.876 hybrid contribution 1.080 -0.838 -0.687 1.530 sum 5.768 1.099 25.706 26.368 Atomic orbital electron populations 1.21746 0.95343 1.01266 1.00878 1.21248 0.96097 0.99937 0.93302 0.91234 1.19566 0.96032 0.95882 0.92884 1.21067 1.35777 1.09724 0.89007 0.90799 1.25026 0.95560 0.96969 0.95921 1.69904 1.46826 1.39271 0.98085 0.86802 0.80624 0.84230 0.77745 1.20308 1.21386 1.19073 1.21714 0.99093 0.95320 0.84121 1.45009 1.61030 1.28168 1.02306 1.17930 0.93163 0.92942 0.85754 1.21044 1.01060 0.96303 0.98466 1.21012 0.98708 0.99327 0.91829 1.20550 0.97611 0.93626 0.99393 1.30428 1.13792 1.10846 1.16284 1.01716 0.72924 0.72769 0.73622 1.93600 1.46973 1.69614 1.84241 1.93593 1.86079 1.62596 1.52691 1.55142 1.55554 1.42486 1.31202 1.21338 0.98390 0.88322 0.94400 1.23430 0.92776 1.03529 1.03032 1.23397 1.03576 0.94530 1.01049 1.20258 1.02053 1.00865 0.90020 0.93480 0.94760 0.91118 0.96487 0.96800 0.92678 0.92398 0.92433 0.76249 0.85193 0.85347 0.84981 0.74773 0.84495 0.88251 0.87721 0.87709 0.88281 0.84733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.88 37.16 0.33 -1.95 16 2 C -0.09 -1.52 2.37 -90.62 -0.22 -1.73 16 3 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 4 C -0.01 -0.13 3.52 -27.88 -0.10 -0.23 16 5 C -0.52 -13.88 8.96 -34.43 -0.31 -14.19 16 6 H 0.07 2.13 7.30 -52.49 -0.38 1.75 16 7 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.90 -27.04 13.96 55.43 0.77 -26.26 16 9 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 13 C 0.12 1.73 4.30 -4.04 -0.02 1.71 16 14 N -0.74 -9.29 5.46 -58.63 -0.32 -9.61 16 15 C 0.21 2.57 6.65 -83.79 -0.56 2.01 16 16 C -0.15 -1.69 9.31 -39.38 -0.37 -2.05 16 17 C -0.09 -0.91 10.04 -39.61 -0.40 -1.31 16 18 C -0.09 -0.94 9.52 -39.54 -0.38 -1.31 16 19 C -0.62 -6.78 5.94 -39.61 -0.24 -7.02 16 20 S 2.70 27.61 5.72 -107.50 -0.61 26.99 16 21 O -0.95 -12.45 17.04 -57.17 -0.97 -13.43 16 22 O -0.96 -11.93 17.28 -57.17 -0.99 -12.92 16 23 N -1.09 -7.81 6.04 -4.89 -0.03 -7.84 16 24 C 0.08 0.58 6.46 -67.93 -0.44 0.14 16 25 C -0.19 -1.09 10.46 -26.69 -0.28 -1.36 16 26 C -0.19 -1.06 10.46 -26.69 -0.28 -1.34 16 27 C -0.11 -1.23 9.37 -39.38 -0.37 -1.60 16 28 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.03 0.48 7.18 -51.93 -0.37 0.11 16 30 H 0.07 1.36 6.95 -51.93 -0.36 1.00 16 31 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 32 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.06 0.82 7.94 -51.93 -0.41 0.41 16 35 H 0.06 0.82 7.96 -51.93 -0.41 0.40 16 36 H 0.40 4.68 7.67 -40.82 -0.31 4.37 16 37 H 0.13 1.42 6.74 -52.49 -0.35 1.07 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.13 1.16 7.61 -52.49 -0.40 0.76 16 40 H 0.42 2.12 8.96 -34.47 -0.31 1.81 16 41 H 0.14 0.93 8.11 -51.93 -0.42 0.51 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.13 1.38 7.62 -52.48 -0.40 0.98 16 LS Contribution 389.44 15.07 5.87 5.87 Total: -1.00 -33.64 389.44 -11.69 -45.33 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.03 Total: 4.06 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -3.71 Total: -28.46 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: 0.42 Total: -43.71 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -1.96 Total: -26.34 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Atomic # 16 Polarization: 27.61 SS G_CDS: -0.61 Total: 26.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.64 -11.69 -45.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602610201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.567 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds