Wall clock time and date at job start Tue Mar 31 2020 20:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47594 * 2 1 4 4 C 1.53003 * 109.46948 * 239.99839 * 2 1 3 5 5 C 1.50705 * 109.46714 * 65.00412 * 4 2 1 6 6 H 1.07995 * 120.00204 * 359.97438 * 5 4 2 7 7 C 1.37886 * 119.99649 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99862 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 120.00188 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47146 * 89.99712 * 9 7 5 11 11 H 1.48497 * 109.46751 * 210.00239 * 9 7 5 12 12 H 1.48504 * 109.46610 * 329.99584 * 9 7 5 13 13 C 1.52998 * 109.47208 * 120.00199 * 2 1 3 14 14 N 1.46500 * 109.47206 * 294.99908 * 13 2 1 15 15 C 1.39666 * 120.00031 * 179.97438 * 14 13 2 16 16 C 1.38938 * 120.07642 * 0.29658 * 15 14 13 17 17 C 1.38081 * 119.92462 * 180.27812 * 16 15 14 18 18 C 1.38308 * 120.07401 * 359.44415 * 17 16 15 19 19 C 1.38269 * 120.15155 * 0.25953 * 18 17 16 20 20 S 1.76199 * 119.96284 * 180.02562 * 19 18 17 21 21 O 1.42095 * 106.40174 * 203.53784 * 20 19 18 22 22 O 1.42096 * 106.40567 * 336.46431 * 20 19 18 23 23 N 1.65599 * 107.21542 * 89.99972 * 20 19 18 24 24 C 1.46509 * 120.00068 * 65.00019 * 23 20 19 25 25 C 1.52999 * 117.50059 * 213.74282 * 24 23 20 26 26 C 1.53000 * 117.49789 * 145.08058 * 24 23 20 27 27 C 1.38121 * 120.07065 * 0.02562 * 19 18 17 28 28 H 1.09005 * 109.47170 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46805 * 299.99972 * 1 2 3 30 30 H 1.08999 * 109.46804 * 59.99615 * 1 2 3 31 31 H 1.08997 * 109.47037 * 184.99751 * 4 2 1 32 32 H 1.08994 * 109.47747 * 305.00332 * 4 2 1 33 33 H 0.97002 * 120.00121 * 180.02562 * 8 7 5 34 34 H 1.09001 * 109.46911 * 174.99620 * 13 2 1 35 35 H 1.09005 * 109.47072 * 54.99855 * 13 2 1 36 36 H 0.96998 * 119.99614 * 359.97438 * 14 13 2 37 37 H 1.07998 * 120.03480 * 0.02562 * 16 15 14 38 38 H 1.08002 * 119.96548 * 179.72945 * 17 16 15 39 39 H 1.08000 * 119.92840 * 180.27748 * 18 17 16 40 40 H 0.97001 * 120.00494 * 244.99769 * 23 20 19 41 41 H 1.09003 * 115.54654 * 359.41439 * 24 23 20 42 42 H 1.08998 * 117.49670 * 0.02562 * 25 24 23 43 43 H 1.08999 * 117.49560 * 145.01871 * 25 24 23 44 44 H 1.09000 * 117.50021 * 214.97376 * 26 24 23 45 45 H 1.08998 * 117.50031 * 359.97438 * 26 24 23 46 46 H 1.08006 * 120.03375 * 180.02562 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9742 -2.3757 7 6 1.9932 -0.4017 -3.7284 8 7 1.6449 0.2773 -4.7994 9 14 2.9635 -1.9884 -3.9029 10 1 2.0242 -3.1325 -4.0202 11 1 3.8124 -1.9180 -5.1192 12 1 3.8251 -2.1756 -2.7080 13 6 2.0400 -0.7213 1.2492 14 7 1.6525 0.0353 2.4424 15 6 2.0081 -0.4300 3.7103 16 6 2.7347 -1.6070 3.8416 17 6 3.0796 -2.0672 5.0970 18 6 2.7126 -1.3519 6.2224 19 6 1.9948 -0.1770 6.0951 20 16 1.5304 0.7307 7.5321 21 8 0.4004 1.5107 7.1662 22 8 1.5183 -0.1984 8.6071 23 7 2.7531 1.8005 7.8525 24 6 3.0503 2.8783 6.9056 25 6 4.5110 3.3110 6.7635 26 6 3.5099 4.2187 7.4826 27 6 1.6414 0.2859 4.8426 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.1263 -0.7995 -1.2056 32 1 1.6054 -1.7198 -1.2953 33 1 1.8921 -0.0456 -5.6801 34 1 3.1263 -0.7995 1.2054 35 1 1.6054 -1.7199 1.2951 36 1 1.1489 0.8593 2.3517 37 1 3.0258 -2.1634 2.9630 38 1 3.6406 -2.9843 5.2000 39 1 2.9875 -1.7116 7.2029 40 1 3.2726 1.7137 8.6670 41 1 2.4289 2.9022 6.0104 42 1 5.2508 2.7935 7.3741 43 1 4.8504 3.6199 5.7748 44 1 3.1913 5.1245 6.9667 45 1 3.5907 4.2989 8.5666 46 1 1.0811 1.2040 4.7438 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602610201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:25 Heat of formation + Delta-G solvation = -55.871245 kcal Electronic energy + Delta-G solvation = -26534.328271 eV Core-core repulsion = 22743.174509 eV Total energy + Delta-G solvation = -3791.153763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.52566 -38.72683 -38.28169 -38.15194 -37.00918 -35.59230 -34.06615 -33.09983 -32.21297 -30.61331 -29.07839 -27.19262 -24.79665 -23.87792 -23.20698 -23.10732 -22.80570 -20.89096 -20.62271 -19.15522 -18.99923 -18.56674 -17.57238 -17.17637 -16.91591 -16.62838 -16.23978 -16.00256 -15.92524 -15.58465 -15.01886 -14.82002 -14.66231 -14.63585 -14.16709 -13.87098 -13.64816 -13.53867 -13.32190 -13.24180 -13.17469 -13.14559 -13.05785 -12.86953 -12.67248 -12.53349 -12.33678 -12.24687 -11.78365 -11.72864 -11.66069 -11.37258 -11.29679 -11.12871 -11.10270 -10.74493 -10.27001 -10.01767 -8.42826 -8.26509 -6.29415 -0.68831 -0.11004 0.53589 1.37276 1.38690 1.49678 1.93150 2.37494 2.44653 2.54044 2.81293 2.99295 3.09313 3.33524 3.84332 3.91880 3.97776 4.00713 4.09314 4.10562 4.12445 4.13933 4.20947 4.30981 4.46913 4.56129 4.71869 4.73724 4.85772 4.87652 4.89033 5.03090 5.08266 5.08956 5.21672 5.23880 5.27693 5.29214 5.34789 5.42804 5.47158 5.62870 5.68276 5.75555 6.02220 6.28008 6.35499 6.76853 6.78897 7.34425 8.90069 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017412 B = 0.002299 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.724297 B =12176.952828 C =12701.115586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.080 4.080 3 H 0.061 0.939 4 C -0.005 4.005 5 C -0.519 4.519 6 H 0.036 0.964 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.947 3.053 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.242 1.242 13 C 0.136 3.864 14 N -0.739 5.739 15 C 0.194 3.806 16 C -0.155 4.155 17 C -0.089 4.089 18 C -0.094 4.094 19 C -0.629 4.629 20 S 2.720 3.280 21 O -0.985 6.985 22 O -0.982 6.982 23 N -1.076 6.076 24 C 0.061 3.939 25 C -0.182 4.182 26 C -0.182 4.182 27 C -0.116 4.116 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.036 0.964 31 H 0.023 0.977 32 H 0.021 0.979 33 H 0.264 0.736 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.405 0.595 37 H 0.137 0.863 38 H 0.156 0.844 39 H 0.148 0.852 40 H 0.428 0.572 41 H 0.135 0.865 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.107 0.893 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.171 0.691 28.645 29.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.099 4.099 3 H 0.079 0.921 4 C -0.043 4.043 5 C -0.557 4.557 6 H 0.054 0.946 7 C -0.196 4.196 8 N -0.596 5.596 9 Si 0.771 3.229 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.165 1.165 13 C 0.012 3.988 14 N -0.368 5.368 15 C 0.089 3.911 16 C -0.178 4.178 17 C -0.108 4.108 18 C -0.116 4.116 19 C -0.718 4.718 20 S 2.812 3.188 21 O -0.975 6.975 22 O -0.972 6.972 23 N -0.835 5.835 24 C -0.047 4.047 25 C -0.221 4.221 26 C -0.222 4.222 27 C -0.140 4.140 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.241 0.759 37 H 0.155 0.845 38 H 0.173 0.827 39 H 0.166 0.834 40 H 0.266 0.734 41 H 0.152 0.848 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.343 0.479 28.621 29.320 hybrid contribution 0.552 -0.280 -1.298 1.438 sum 6.895 0.199 27.323 28.181 Atomic orbital electron populations 1.21667 0.95103 1.01336 1.00584 1.21067 0.96248 0.99371 0.93250 0.92091 1.19522 0.96381 0.95783 0.92616 1.21433 1.34375 1.08756 0.91178 0.94619 1.26006 0.97032 1.00943 0.95573 1.70071 1.49044 1.41683 0.98759 0.85708 0.79353 0.79457 0.78425 1.19494 1.21530 1.16474 1.21396 0.99240 0.95049 0.83105 1.44816 1.61669 1.28318 1.02013 1.18055 0.93977 0.93603 0.85508 1.21266 1.01000 0.96169 0.99383 1.21338 0.98272 1.00076 0.91119 1.20876 0.96981 0.93290 1.00419 1.30487 1.13920 1.11279 1.16083 1.00881 0.72761 0.72330 0.72876 1.93560 1.49043 1.70290 1.84613 1.93556 1.86628 1.63529 1.53535 1.54794 1.55059 1.41865 1.31756 1.21519 0.99533 0.88948 0.94678 1.23491 0.92177 1.03060 1.03392 1.23504 1.02895 0.94087 1.01679 1.20374 1.02267 1.01216 0.90124 0.93159 0.92004 0.94450 0.95887 0.96094 0.92714 0.91867 0.91832 0.75922 0.84541 0.82658 0.83391 0.73436 0.84762 0.87422 0.87438 0.87116 0.87445 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 8.88 71.98 0.64 -3.68 16 2 C -0.08 -2.74 2.37 -10.79 -0.03 -2.76 16 3 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 4 C -0.01 -0.22 3.52 29.85 0.10 -0.11 16 5 C -0.52 -28.41 8.96 25.60 0.23 -28.18 16 6 H 0.04 2.16 7.30 -2.91 -0.02 2.14 16 7 C 0.00 0.04 5.47 84.66 0.46 0.50 16 8 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 9 Si 0.95 42.75 27.47 68.60 1.88 44.63 16 10 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 11 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 12 H -0.24 -9.86 6.54 99.48 0.65 -9.21 16 13 C 0.14 3.60 4.30 86.38 0.37 3.97 16 14 N -0.74 -17.32 5.46 -339.41 -1.85 -19.17 16 15 C 0.19 4.41 6.65 38.22 0.25 4.67 16 16 C -0.16 -3.21 9.31 22.40 0.21 -3.00 16 17 C -0.09 -1.57 10.04 22.25 0.22 -1.34 16 18 C -0.09 -1.74 9.52 22.29 0.21 -1.53 16 19 C -0.63 -12.69 5.94 22.25 0.13 -12.56 16 20 S 2.72 52.94 5.72 -56.49 -0.32 52.62 16 21 O -0.99 -25.28 17.04 -128.00 -2.18 -27.46 16 22 O -0.98 -23.32 17.28 -128.00 -2.21 -25.54 16 23 N -1.08 -13.91 6.04 -169.37 -1.02 -14.93 16 24 C 0.06 0.76 6.46 44.99 0.29 1.05 16 25 C -0.18 -1.75 10.46 30.62 0.32 -1.43 16 26 C -0.18 -1.75 10.46 30.62 0.32 -1.43 16 27 C -0.12 -2.50 9.37 22.40 0.21 -2.29 16 28 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.06 1.69 7.18 -2.39 -0.02 1.68 16 30 H 0.04 1.47 6.95 -2.39 -0.02 1.46 16 31 H 0.02 0.96 7.20 -2.39 -0.02 0.94 16 32 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 33 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.06 1.62 7.94 -2.39 -0.02 1.60 16 35 H 0.06 1.62 7.96 -2.38 -0.02 1.61 16 36 H 0.40 8.88 7.67 -92.71 -0.71 8.16 16 37 H 0.14 2.59 6.74 -2.91 -0.02 2.57 16 38 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 39 H 0.15 2.22 7.61 -2.91 -0.02 2.19 16 40 H 0.43 3.61 8.96 -96.74 -0.87 2.74 16 41 H 0.13 1.72 8.11 -2.39 -0.02 1.70 16 42 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.14 2.76 7.62 -2.91 -0.02 2.74 16 Total: -1.00 -73.16 389.44 -2.09 -75.25 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -0.64 Total: 21.40 kcal Atomic # 6 Polarization: -52.08 SS G_CDS: 3.95 Total: -48.13 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -2.58 Total: -92.77 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -4.39 Total: -53.00 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.88 Total: 44.63 kcal Atomic # 16 Polarization: 52.94 SS G_CDS: -0.32 Total: 52.62 kcal Total: -73.16 -2.09 -75.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602610201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.379 kcal (2) G-P(sol) polarization free energy of solvation -73.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds