Wall clock time and date at job start Tue Mar 31 2020 20:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46673 * 2 1 4 4 C 1.52997 * 109.46846 * 240.00384 * 2 1 3 5 5 C 1.50698 * 109.47172 * 65.00246 * 4 2 1 6 6 H 1.08000 * 120.00312 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99511 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00201 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47082 * 89.99882 * 9 7 5 11 11 H 1.48497 * 109.47478 * 209.99892 * 9 7 5 12 12 H 1.48501 * 109.47219 * 329.99969 * 9 7 5 13 13 C 1.53001 * 109.47256 * 120.00022 * 2 1 3 14 14 N 1.46493 * 109.47085 * 295.00385 * 13 2 1 15 15 C 1.39675 * 120.00011 * 180.02562 * 14 13 2 16 16 C 1.38965 * 119.99607 * 359.72059 * 15 14 13 17 17 C 1.38125 * 119.74257 * 180.02562 * 16 15 14 18 18 C 1.37918 * 120.31502 * 0.02562 * 17 16 15 19 19 C 1.39706 * 120.43715 * 359.97438 * 18 17 16 20 20 C 1.38501 * 119.07485 * 359.68621 * 19 18 17 21 21 C 1.51212 * 108.57128 * 179.78425 * 20 19 18 22 22 C 1.53759 * 104.52405 * 0.41477 * 21 20 19 23 23 N 1.39596 * 129.27655 * 179.97438 * 19 18 17 24 24 S 1.65598 * 124.95626 * 0.02562 * 23 19 18 25 25 C 1.81403 * 104.44943 * 90.00032 * 24 23 19 26 26 O 1.42105 * 104.27635 * 206.07336 * 24 23 19 27 27 O 1.42096 * 104.27724 * 333.92620 * 24 23 19 28 28 H 1.08997 * 109.47589 * 59.99404 * 1 2 3 29 29 H 1.09000 * 109.47555 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47351 * 299.99980 * 1 2 3 31 31 H 1.09003 * 109.46724 * 184.99618 * 4 2 1 32 32 H 1.09002 * 109.47058 * 304.99496 * 4 2 1 33 33 H 0.97008 * 119.99515 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.47065 * 174.99746 * 13 2 1 35 35 H 1.09001 * 109.46892 * 55.00010 * 13 2 1 36 36 H 0.97000 * 120.00739 * 359.72095 * 14 13 2 37 37 H 1.08002 * 120.13024 * 359.97438 * 16 15 14 38 38 H 1.08001 * 119.84412 * 179.97438 * 17 16 15 39 39 H 1.08005 * 119.78055 * 179.97438 * 18 17 16 40 40 H 1.08996 * 110.63211 * 241.54615 * 21 20 19 41 41 H 1.09000 * 110.31843 * 119.11602 * 21 20 19 42 42 H 1.09005 * 110.29560 * 240.83360 * 22 21 20 43 43 H 1.08998 * 110.38435 * 118.72175 * 22 21 20 44 44 H 1.09001 * 109.46563 * 59.99939 * 25 24 23 45 45 H 1.08990 * 109.46713 * 179.97438 * 25 24 23 46 46 H 1.08998 * 109.47023 * 300.00074 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4765 6 1 1.0799 0.9744 -2.3757 7 6 1.9932 -0.4015 -3.7283 8 7 1.6448 0.2776 -4.7993 9 14 2.9646 -1.9874 -3.9028 10 1 2.0262 -3.1324 -4.0197 11 1 3.8132 -1.9168 -5.1194 12 1 3.8268 -2.1738 -2.7082 13 6 2.0400 -0.7213 1.2492 14 7 1.6524 0.0353 2.4423 15 6 2.0089 -0.4295 3.7103 16 6 2.7263 -1.6125 3.8403 17 6 3.0757 -2.0675 5.0968 18 6 2.7155 -1.3538 6.2207 19 6 1.9942 -0.1632 6.1020 20 6 1.6520 0.2934 4.8400 21 6 0.8786 1.5843 4.9883 22 6 0.8229 1.8283 6.5054 23 7 1.5381 0.6971 7.1022 24 16 1.7709 0.4721 8.7262 25 6 3.3387 1.3134 9.0795 26 8 0.6871 1.1611 9.3344 27 8 1.9168 -0.9343 8.8677 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.1263 -0.7993 -1.2056 32 1 1.6053 -1.7197 -1.2952 33 1 1.8927 -0.0450 -5.6800 34 1 3.1263 -0.7995 1.2055 35 1 1.6054 -1.7198 1.2951 36 1 1.1520 0.8612 2.3516 37 1 3.0089 -2.1744 2.9624 38 1 3.6329 -2.9869 5.1998 39 1 2.9928 -1.7178 7.1990 40 1 -0.1275 1.4780 4.5829 41 1 1.4041 2.3996 4.4910 42 1 -0.2118 1.8452 6.8479 43 1 1.3196 2.7652 6.7577 44 1 3.2501 2.3693 8.8236 45 1 3.5728 1.2153 10.1395 46 1 4.1349 0.8617 8.4878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602613710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:20 Heat of formation + Delta-G solvation = -43.441596 kcal Electronic energy + Delta-G solvation = -26946.492903 eV Core-core repulsion = 23155.878130 eV Total energy + Delta-G solvation = -3790.614773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.63386 -37.76768 -37.64712 -36.43598 -36.07770 -34.05325 -32.32400 -31.31709 -29.98976 -29.47846 -28.42996 -27.28664 -25.84214 -23.18140 -23.01918 -21.74299 -21.52150 -19.43218 -19.25866 -18.15178 -17.08278 -16.98561 -16.65148 -16.04328 -15.75131 -15.67914 -15.58216 -14.80752 -14.64143 -14.25249 -13.91200 -13.71450 -13.60332 -13.28135 -13.10931 -13.06298 -12.81045 -12.61658 -12.58389 -12.45230 -12.37510 -12.28302 -12.03720 -11.82474 -11.54174 -11.37597 -11.14195 -11.07496 -11.01224 -10.66651 -10.55905 -10.04114 -9.82118 -9.72193 -9.62780 -9.17050 -8.58280 -8.07660 -7.26261 -6.08617 -4.06679 -0.33947 1.41964 1.65899 2.01679 3.27541 3.34202 3.35636 3.37909 3.51321 3.65386 3.86002 3.97775 4.29717 4.33749 4.41087 4.57281 4.74439 4.84532 5.13876 5.16446 5.22739 5.24553 5.29236 5.36862 5.46048 5.53442 5.59653 5.65202 5.72707 5.76325 5.97021 6.07638 6.14589 6.24082 6.26959 6.33578 6.47577 6.63052 6.65853 6.78319 6.93977 6.96670 7.16062 7.32482 7.46203 7.73816 7.87039 8.48320 8.95596 9.53597 11.04527 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028472 B = 0.002188 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.183956 B =12794.469578 C =13419.697944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.006 4.006 5 C -0.517 4.517 6 H 0.073 0.927 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.265 1.265 13 C 0.123 3.877 14 N -0.736 5.736 15 C 0.267 3.733 16 C -0.221 4.221 17 C -0.039 4.039 18 C -0.218 4.218 19 C 0.200 3.800 20 C -0.218 4.218 21 C -0.071 4.071 22 C 0.118 3.882 23 N -0.939 5.939 24 S 2.614 3.386 25 C -0.670 4.670 26 O -0.947 6.947 27 O -0.937 6.937 28 H 0.068 0.932 29 H 0.046 0.954 30 H 0.032 0.968 31 H 0.017 0.983 32 H 0.014 0.986 33 H 0.263 0.737 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.399 0.601 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.135 0.865 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.010 2.233 27.755 28.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.044 4.044 5 C -0.554 4.554 6 H 0.092 0.908 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.706 3.294 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.190 1.190 13 C -0.001 4.001 14 N -0.363 5.363 15 C 0.160 3.840 16 C -0.245 4.245 17 C -0.059 4.059 18 C -0.242 4.242 19 C 0.103 3.897 20 C -0.227 4.227 21 C -0.110 4.110 22 C -0.006 4.006 23 N -0.763 5.763 24 S 2.709 3.291 25 C -0.820 4.820 26 O -0.937 6.937 27 O -0.928 6.928 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.234 0.766 37 H 0.144 0.856 38 H 0.144 0.856 39 H 0.152 0.848 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.148 0.852 45 H 0.150 0.850 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.473 1.724 28.129 28.290 hybrid contribution 0.902 -0.084 -0.509 1.039 sum 3.375 1.640 27.621 27.874 Atomic orbital electron populations 1.21734 0.95464 1.01221 1.00695 1.21240 0.95987 0.99873 0.93471 0.91393 1.19567 0.96071 0.95886 0.92886 1.21075 1.35665 1.09667 0.89036 0.90847 1.25030 0.95589 0.96991 0.95933 1.69912 1.46916 1.39301 0.98064 0.86799 0.80646 0.84210 0.77745 1.20319 1.21444 1.18994 1.21672 0.99111 0.95292 0.84008 1.44961 1.60967 1.27808 1.02542 1.17165 0.91327 0.91514 0.83997 1.20615 1.07480 0.98125 0.98252 1.20562 0.96225 0.97962 0.91106 1.20608 1.07463 0.95702 1.00411 1.17648 0.94636 0.90596 0.86785 1.19317 1.11367 1.00539 0.91493 1.20851 1.00541 0.95318 0.94246 1.21877 0.97465 0.87376 0.93863 1.56192 1.64902 1.31758 1.23398 1.04977 0.77123 0.75293 0.71740 1.30528 1.23960 1.15405 1.12129 1.93627 1.49634 1.76365 1.74103 1.93626 1.87240 1.27974 1.83920 0.91254 0.93485 0.94876 0.96458 0.96781 0.92731 0.92428 0.92424 0.76641 0.85556 0.85635 0.84751 0.89832 0.89912 0.89488 0.90338 0.85201 0.84999 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.88 37.16 0.33 -1.94 16 2 C -0.09 -1.53 2.37 -90.62 -0.22 -1.75 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 4 C -0.01 -0.14 3.52 -27.89 -0.10 -0.24 16 5 C -0.52 -13.92 8.96 -34.44 -0.31 -14.23 16 6 H 0.07 2.12 7.30 -52.49 -0.38 1.74 16 7 C 0.07 1.85 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 9 Si 0.88 21.10 27.47 -169.99 -4.67 16.43 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 13 C 0.12 1.81 4.30 -4.04 -0.02 1.79 16 14 N -0.74 -9.51 5.46 -58.66 -0.32 -9.83 16 15 C 0.27 3.43 6.65 -83.81 -0.56 2.87 16 16 C -0.22 -2.77 9.32 -39.35 -0.37 -3.13 16 17 C -0.04 -0.45 10.01 -39.74 -0.40 -0.84 16 18 C -0.22 -2.56 9.37 -39.15 -0.37 -2.93 16 19 C 0.20 2.31 6.59 -83.68 -0.55 1.76 16 20 C -0.22 -2.54 6.18 -104.07 -0.64 -3.19 16 21 C -0.07 -0.62 6.47 -27.24 -0.18 -0.80 16 22 C 0.12 0.91 7.08 -3.63 -0.03 0.88 16 23 N -0.94 -8.78 3.40 -58.12 -0.20 -8.98 16 24 S 2.61 21.93 6.20 -107.50 -0.67 21.26 16 25 C -0.67 -2.90 10.99 101.05 1.11 -1.79 16 26 O -0.95 -10.40 17.56 -57.54 -1.01 -11.42 16 27 O -0.94 -10.77 15.25 -57.54 -0.88 -11.65 16 28 H 0.07 1.33 6.95 -51.93 -0.36 0.97 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.47 7.19 -51.93 -0.37 0.09 16 31 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 32 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.10 16 34 H 0.06 0.85 7.96 -51.93 -0.41 0.44 16 35 H 0.06 0.85 7.94 -51.93 -0.41 0.44 16 36 H 0.40 4.75 7.27 -40.82 -0.30 4.46 16 37 H 0.13 1.53 6.73 -52.49 -0.35 1.18 16 38 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.13 1.50 6.10 -52.48 -0.32 1.18 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 45 H 0.13 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.13 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -34.32 378.05 -10.73 -45.04 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.07 Total: 1.59 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -2.38 Total: -21.76 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.26 Total: -45.20 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -1.89 Total: -23.06 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.67 Total: 16.43 kcal Atomic # 16 Polarization: 21.93 SS G_CDS: -0.67 Total: 21.26 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.32 -10.73 -45.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602613710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.602 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds