Wall clock time and date at job start Tue Mar 31 2020 20:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46673 * 2 1 4 4 C 1.52997 * 109.46846 * 240.00384 * 2 1 3 5 5 C 1.50698 * 109.47172 * 65.00246 * 4 2 1 6 6 H 1.08000 * 120.00312 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99709 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99511 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 120.00201 * 359.97438 * 7 5 4 10 10 H 1.48504 * 109.47082 * 89.99882 * 9 7 5 11 11 H 1.48497 * 109.47478 * 209.99892 * 9 7 5 12 12 H 1.48501 * 109.47219 * 329.99969 * 9 7 5 13 13 C 1.53001 * 109.47256 * 120.00022 * 2 1 3 14 14 N 1.46493 * 109.47085 * 295.00385 * 13 2 1 15 15 C 1.39675 * 120.00011 * 180.02562 * 14 13 2 16 16 C 1.38965 * 119.99607 * 359.72059 * 15 14 13 17 17 C 1.38125 * 119.74257 * 180.02562 * 16 15 14 18 18 C 1.37918 * 120.31502 * 0.02562 * 17 16 15 19 19 C 1.39706 * 120.43715 * 359.97438 * 18 17 16 20 20 C 1.38501 * 119.07485 * 359.68621 * 19 18 17 21 21 C 1.51212 * 108.57128 * 179.78425 * 20 19 18 22 22 C 1.53759 * 104.52405 * 0.41477 * 21 20 19 23 23 N 1.39596 * 129.27655 * 179.97438 * 19 18 17 24 24 S 1.65598 * 124.95626 * 0.02562 * 23 19 18 25 25 C 1.81403 * 104.44943 * 90.00032 * 24 23 19 26 26 O 1.42105 * 104.27635 * 206.07336 * 24 23 19 27 27 O 1.42096 * 104.27724 * 333.92620 * 24 23 19 28 28 H 1.08997 * 109.47589 * 59.99404 * 1 2 3 29 29 H 1.09000 * 109.47555 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47351 * 299.99980 * 1 2 3 31 31 H 1.09003 * 109.46724 * 184.99618 * 4 2 1 32 32 H 1.09002 * 109.47058 * 304.99496 * 4 2 1 33 33 H 0.97008 * 119.99515 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.47065 * 174.99746 * 13 2 1 35 35 H 1.09001 * 109.46892 * 55.00010 * 13 2 1 36 36 H 0.97000 * 120.00739 * 359.72095 * 14 13 2 37 37 H 1.08002 * 120.13024 * 359.97438 * 16 15 14 38 38 H 1.08001 * 119.84412 * 179.97438 * 17 16 15 39 39 H 1.08005 * 119.78055 * 179.97438 * 18 17 16 40 40 H 1.08996 * 110.63211 * 241.54615 * 21 20 19 41 41 H 1.09000 * 110.31843 * 119.11602 * 21 20 19 42 42 H 1.09005 * 110.29560 * 240.83360 * 22 21 20 43 43 H 1.08998 * 110.38435 * 118.72175 * 22 21 20 44 44 H 1.09001 * 109.46563 * 59.99939 * 25 24 23 45 45 H 1.08990 * 109.46713 * 179.97438 * 25 24 23 46 46 H 1.08998 * 109.47023 * 300.00074 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6413 0.0572 -2.4765 6 1 1.0799 0.9744 -2.3757 7 6 1.9932 -0.4015 -3.7283 8 7 1.6448 0.2776 -4.7993 9 14 2.9646 -1.9874 -3.9028 10 1 2.0262 -3.1324 -4.0197 11 1 3.8132 -1.9168 -5.1194 12 1 3.8268 -2.1738 -2.7082 13 6 2.0400 -0.7213 1.2492 14 7 1.6524 0.0353 2.4423 15 6 2.0089 -0.4295 3.7103 16 6 2.7263 -1.6125 3.8403 17 6 3.0757 -2.0675 5.0968 18 6 2.7155 -1.3538 6.2207 19 6 1.9942 -0.1632 6.1020 20 6 1.6520 0.2934 4.8400 21 6 0.8786 1.5843 4.9883 22 6 0.8229 1.8283 6.5054 23 7 1.5381 0.6971 7.1022 24 16 1.7709 0.4721 8.7262 25 6 3.3387 1.3134 9.0795 26 8 0.6871 1.1611 9.3344 27 8 1.9168 -0.9343 8.8677 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.1263 -0.7993 -1.2056 32 1 1.6053 -1.7197 -1.2952 33 1 1.8927 -0.0450 -5.6800 34 1 3.1263 -0.7995 1.2055 35 1 1.6054 -1.7198 1.2951 36 1 1.1520 0.8612 2.3516 37 1 3.0089 -2.1744 2.9624 38 1 3.6329 -2.9869 5.1998 39 1 2.9928 -1.7178 7.1990 40 1 -0.1275 1.4780 4.5829 41 1 1.4041 2.3996 4.4910 42 1 -0.2118 1.8452 6.8479 43 1 1.3196 2.7652 6.7577 44 1 3.2501 2.3693 8.8236 45 1 3.5728 1.2153 10.1395 46 1 4.1349 0.8617 8.4878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602613710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:19 Heat of formation + Delta-G solvation = -66.709170 kcal Electronic energy + Delta-G solvation = -26947.501861 eV Core-core repulsion = 23155.878130 eV Total energy + Delta-G solvation = -3791.623730 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.43404 -38.80866 -38.39358 -37.20975 -37.14797 -35.36347 -34.08680 -32.27043 -30.40363 -30.25117 -29.79732 -28.63743 -27.06479 -24.56819 -23.84951 -22.78845 -22.44062 -20.76696 -20.09637 -19.02265 -18.89171 -17.71365 -17.42566 -16.94245 -16.74062 -16.47488 -16.33806 -16.23779 -15.90702 -15.50821 -14.88204 -14.77155 -14.45956 -14.11299 -14.10416 -14.02295 -13.91164 -13.56461 -13.47612 -13.40745 -13.31971 -13.26078 -13.17105 -12.83773 -12.69786 -12.63953 -12.36707 -12.10266 -12.06643 -11.93326 -11.72142 -11.68274 -11.37615 -11.29888 -11.08564 -10.72502 -10.65366 -8.86397 -8.24803 -8.21595 -6.27151 -0.92898 0.56164 0.75390 1.37822 1.38696 1.40231 1.51321 2.39216 2.57399 2.74814 2.94430 3.01385 3.11082 3.31165 3.79072 3.98062 4.03327 4.06769 4.12464 4.18499 4.22703 4.31170 4.39157 4.50621 4.62738 4.65679 4.72883 4.79457 4.82757 4.87109 4.93624 5.04770 5.05891 5.07413 5.21205 5.27923 5.34745 5.38463 5.43352 5.50782 5.62864 5.67593 5.71711 5.76862 6.06385 6.32975 6.48697 6.80704 6.91715 7.36548 8.91612 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.028472 B = 0.002188 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.183956 B =12794.469578 C =13419.697944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.079 4.079 3 H 0.060 0.940 4 C -0.006 4.006 5 C -0.517 4.517 6 H 0.037 0.963 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.946 3.054 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.243 1.243 13 C 0.139 3.861 14 N -0.735 5.735 15 C 0.252 3.748 16 C -0.236 4.236 17 C -0.042 4.042 18 C -0.229 4.229 19 C 0.195 3.805 20 C -0.227 4.227 21 C -0.072 4.072 22 C 0.110 3.890 23 N -0.942 5.942 24 S 2.612 3.388 25 C -0.644 4.644 26 O -0.979 6.979 27 O -0.977 6.977 28 H 0.036 0.964 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.021 0.979 32 H 0.020 0.980 33 H 0.264 0.736 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.403 0.597 37 H 0.128 0.872 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.153 0.847 45 H 0.155 0.845 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.513 2.012 30.096 30.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.098 4.098 3 H 0.079 0.921 4 C -0.044 4.044 5 C -0.555 4.555 6 H 0.055 0.945 7 C -0.196 4.196 8 N -0.595 5.595 9 Si 0.770 3.230 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.166 1.166 13 C 0.014 3.986 14 N -0.363 5.363 15 C 0.146 3.854 16 C -0.260 4.260 17 C -0.061 4.061 18 C -0.253 4.253 19 C 0.097 3.903 20 C -0.236 4.236 21 C -0.110 4.110 22 C -0.013 4.013 23 N -0.764 5.764 24 S 2.712 3.288 25 C -0.798 4.798 26 O -0.970 6.970 27 O -0.968 6.968 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.239 0.761 37 H 0.145 0.855 38 H 0.164 0.836 39 H 0.155 0.845 40 H 0.104 0.896 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.129 0.871 44 H 0.172 0.828 45 H 0.173 0.827 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.930 1.493 30.504 30.792 hybrid contribution 0.423 0.096 -1.129 1.210 sum 4.353 1.589 29.375 29.738 Atomic orbital electron populations 1.21650 0.95023 1.01260 1.00573 1.21056 0.96289 0.99275 0.93191 0.92129 1.19528 0.96329 0.95791 0.92747 1.21427 1.34264 1.08721 0.91104 0.94487 1.25991 0.97061 1.00886 0.95625 1.70073 1.49074 1.41645 0.98718 0.85724 0.79389 0.79569 0.78368 1.19514 1.21517 1.16612 1.21337 0.99031 0.94989 0.83224 1.44738 1.61554 1.27944 1.02095 1.17313 0.92004 0.92028 0.84034 1.20760 1.08036 0.98402 0.98762 1.20809 0.96048 0.98604 0.90628 1.20797 1.07723 0.96051 1.00685 1.17805 0.94305 0.90751 0.87406 1.19611 1.11310 1.01558 0.91168 1.20941 1.00419 0.94409 0.95206 1.22115 0.97967 0.88188 0.93059 1.56205 1.65204 1.31825 1.23203 1.04856 0.78288 0.74615 0.71082 1.30310 1.19704 1.15903 1.13931 1.93584 1.52484 1.76495 1.74457 1.93572 1.88126 1.30816 1.84244 0.94444 0.93311 0.91898 0.96028 0.96191 0.92755 0.92261 0.92138 0.76136 0.85457 0.83649 0.84515 0.89608 0.88477 0.89550 0.87104 0.82832 0.82673 0.83644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.26 8.88 71.98 0.64 -3.62 16 2 C -0.08 -2.73 2.37 -10.79 -0.03 -2.76 16 3 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.01 -0.26 3.52 29.85 0.10 -0.16 16 5 C -0.52 -28.42 8.96 25.60 0.23 -28.19 16 6 H 0.04 2.24 7.30 -2.91 -0.02 2.22 16 7 C 0.00 0.03 5.47 84.66 0.46 0.49 16 8 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 9 Si 0.95 43.25 27.47 68.60 1.88 45.13 16 10 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.24 -10.13 6.54 99.48 0.65 -9.48 16 13 C 0.14 3.84 4.30 86.38 0.37 4.21 16 14 N -0.74 -17.78 5.46 -339.49 -1.85 -19.64 16 15 C 0.25 6.10 6.65 38.20 0.25 6.35 16 16 C -0.24 -5.59 9.32 22.42 0.21 -5.38 16 17 C -0.04 -0.89 10.01 22.17 0.22 -0.67 16 18 C -0.23 -5.12 9.37 22.55 0.21 -4.91 16 19 C 0.20 4.23 6.59 38.32 0.25 4.48 16 20 C -0.23 -4.95 6.18 -19.51 -0.12 -5.07 16 21 C -0.07 -1.10 6.47 30.27 0.20 -0.91 16 22 C 0.11 1.45 7.08 86.63 0.61 2.07 16 23 N -0.94 -16.02 3.40 -337.80 -1.15 -17.16 16 24 S 2.61 39.93 6.20 -56.49 -0.35 39.58 16 25 C -0.64 -3.15 10.99 113.37 1.25 -1.90 16 26 O -0.98 -20.57 17.56 -127.65 -2.24 -22.81 16 27 O -0.98 -21.98 15.25 -127.65 -1.95 -23.92 16 28 H 0.04 1.47 6.95 -2.39 -0.02 1.45 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.70 7.19 -2.38 -0.02 1.68 16 31 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 32 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 33 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 34 H 0.06 1.64 7.96 -2.39 -0.02 1.62 16 35 H 0.06 1.66 7.94 -2.39 -0.02 1.64 16 36 H 0.40 8.90 7.27 -92.71 -0.67 8.23 16 37 H 0.13 2.90 6.73 -2.91 -0.02 2.88 16 38 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 39 H 0.14 2.94 6.10 -2.91 -0.02 2.92 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.15 0.15 8.14 -2.39 -0.02 0.13 16 45 H 0.16 0.17 8.14 -2.40 -0.02 0.16 16 46 H 0.15 0.53 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -76.44 378.05 -0.23 -76.67 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.26 Total: 16.85 kcal Atomic # 6 Polarization: -40.82 SS G_CDS: 4.87 Total: -35.95 kcal Atomic # 7 Polarization: -92.86 SS G_CDS: -2.70 Total: -95.56 kcal Atomic # 8 Polarization: -42.54 SS G_CDS: -4.19 Total: -46.73 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.88 Total: 45.13 kcal Atomic # 16 Polarization: 39.93 SS G_CDS: -0.35 Total: 39.58 kcal Total: -76.44 -0.23 -76.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602613710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.965 kcal (2) G-P(sol) polarization free energy of solvation -76.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds