Wall clock time and date at job start Tue Mar 31 2020 20:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47418 * 2 1 4 4 C 1.52998 * 109.47087 * 120.00359 * 2 1 3 5 5 C 1.50700 * 109.47172 * 295.00036 * 4 2 1 6 6 H 1.08006 * 119.99808 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99927 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00308 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47006 * 59.99935 * 9 7 5 11 11 H 1.48497 * 109.47135 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46967 * 299.99872 * 9 7 5 13 13 C 1.52997 * 109.46587 * 240.00141 * 2 1 3 14 14 N 1.46901 * 109.47336 * 65.00622 * 13 2 1 15 15 C 1.47160 * 110.99932 * 189.99909 * 14 13 2 16 16 C 1.52902 * 108.51227 * 165.33751 * 15 14 13 17 17 C 1.50710 * 109.94566 * 50.46828 * 16 15 14 18 18 C 1.37875 * 121.65888 * 343.09561 * 17 16 15 19 19 C 1.38695 * 119.72502 * 180.78601 * 18 17 16 20 20 C 1.38057 * 120.37451 * 359.51568 * 19 18 17 21 21 C 1.38220 * 119.87118 * 0.02562 * 20 19 18 22 22 C 1.38076 * 119.82800 * 0.10118 * 21 20 19 23 23 S 1.76196 * 119.82861 * 179.97438 * 22 21 20 24 24 N 1.65597 * 107.21775 * 115.00093 * 23 22 21 25 25 O 1.42099 * 106.40200 * 1.46006 * 23 22 21 26 26 O 1.42099 * 106.40670 * 228.54561 * 23 22 21 27 27 C 1.46973 * 110.92239 * 67.43113 * 14 13 2 28 28 H 1.09000 * 109.47393 * 59.99551 * 1 2 3 29 29 H 1.08994 * 109.47418 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47154 * 299.99749 * 1 2 3 31 31 H 1.09004 * 109.46939 * 54.99648 * 4 2 1 32 32 H 1.08994 * 109.47208 * 174.99588 * 4 2 1 33 33 H 0.96994 * 120.00039 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47813 * 305.00216 * 13 2 1 35 35 H 1.09007 * 109.47104 * 185.00250 * 13 2 1 36 36 H 1.09001 * 109.63145 * 45.62797 * 15 14 13 37 37 H 1.08998 * 109.63120 * 285.03998 * 15 14 13 38 38 H 1.09000 * 109.38809 * 290.32435 * 16 15 14 39 39 H 1.08999 * 109.31341 * 170.56769 * 16 15 14 40 40 H 1.07998 * 119.81280 * 179.49390 * 19 18 17 41 41 H 1.07998 * 120.06424 * 180.02562 * 20 19 18 42 42 H 1.07999 * 120.08712 * 180.02562 * 21 20 19 43 43 H 0.97001 * 120.00224 * 0.02562 * 24 23 22 44 44 H 0.97005 * 120.00050 * 179.72515 * 24 23 22 45 45 H 1.08993 * 109.88989 * 55.61982 * 27 14 13 46 46 H 1.08998 * 108.76821 * 296.07712 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0569 2.4766 6 1 1.0806 0.9745 2.3757 7 6 1.9932 -0.4019 3.7282 8 7 2.6764 -1.5190 3.8510 9 14 1.4997 0.5631 5.2496 10 1 0.0197 0.6697 5.3096 11 1 1.9946 -0.1371 6.4620 12 1 2.0919 1.9234 5.1866 13 6 2.0399 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 1.9128 -0.7370 -3.6693 16 6 1.1687 -0.0764 -4.8303 17 6 1.4770 1.3984 -4.8658 18 6 2.0237 2.0498 -3.7806 19 6 2.2763 3.4117 -3.8516 20 6 1.9926 4.1151 -5.0052 21 6 1.4533 3.4596 -6.0961 22 6 1.1988 2.1043 -6.0262 23 16 0.5108 1.2689 -7.4166 24 7 1.6467 0.1889 -7.9509 25 8 0.3704 2.2435 -8.4411 26 8 -0.5760 0.4974 -6.9238 27 6 2.3603 1.3236 -2.5047 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6053 -1.7199 1.2950 32 1 3.1263 -0.7996 1.2055 33 1 2.9243 -1.8416 4.7315 34 1 1.6053 -1.7197 -1.2953 35 1 3.1263 -0.7995 -1.2057 36 1 1.5557 -1.7586 -3.5394 37 1 2.9828 -0.7437 -3.8768 38 1 0.0959 -0.2188 -4.7002 39 1 1.4836 -0.5348 -5.7677 40 1 2.6969 3.9249 -2.9995 41 1 2.1916 5.1754 -5.0551 42 1 1.2304 4.0064 -7.0004 43 1 2.5012 0.1195 -7.4972 44 1 1.4558 -0.3775 -8.7150 45 1 3.4364 1.1563 -2.4591 46 1 2.0550 1.9318 -1.6533 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602752201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:17 Heat of formation + Delta-G solvation = -56.718292 kcal Electronic energy + Delta-G solvation = -27527.992049 eV Core-core repulsion = 23736.801555 eV Total energy + Delta-G solvation = -3791.190493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.46674 -37.80988 -37.39731 -36.07313 -35.05594 -33.78984 -33.01773 -32.35882 -31.27642 -29.56177 -27.02080 -26.27810 -24.47171 -23.57077 -23.32214 -22.19729 -19.94880 -19.59247 -18.95521 -18.27602 -17.74742 -16.74616 -16.47778 -16.29427 -15.89962 -15.49030 -15.30901 -14.94405 -14.40305 -14.35949 -14.15560 -13.84219 -13.35710 -13.18654 -12.73241 -12.62678 -12.47080 -12.37908 -12.28906 -12.21401 -12.12756 -11.99731 -11.64666 -11.48126 -11.28653 -10.93517 -10.86280 -10.82097 -10.76386 -10.74251 -10.30747 -10.27216 -9.70090 -9.54306 -9.16774 -8.99953 -8.90142 -8.34763 -8.18749 -5.99906 -4.01107 0.10543 0.51729 1.01509 2.77986 3.11257 3.32640 3.37299 3.39668 3.42313 3.92640 4.20674 4.32789 4.46138 4.48521 4.67222 4.77710 5.00027 5.05115 5.12488 5.20937 5.35883 5.38735 5.42025 5.49723 5.55951 5.63445 5.63595 5.76637 5.79602 5.86578 6.00658 6.02231 6.10097 6.21217 6.35184 6.48024 6.54458 6.62483 6.66007 6.96518 7.05052 7.15471 7.24298 7.32737 7.65909 7.81828 7.99991 8.43907 9.04999 9.62429 11.11591 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023719 B = 0.002467 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.210148 B =11346.199925 C =11909.222884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 H 0.055 0.945 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.055 0.945 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.059 3.941 14 N -0.526 5.526 15 C 0.051 3.949 16 C -0.112 4.112 17 C 0.032 3.968 18 C -0.089 4.089 19 C -0.055 4.055 20 C -0.144 4.144 21 C -0.022 4.022 22 C -0.679 4.679 23 S 2.702 3.298 24 N -1.252 6.252 25 O -0.970 6.970 26 O -0.957 6.957 27 C 0.086 3.914 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.053 0.947 31 H 0.016 0.984 32 H 0.012 0.988 33 H 0.260 0.740 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.087 0.913 37 H 0.038 0.962 38 H 0.117 0.883 39 H 0.079 0.921 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.143 0.857 43 H 0.417 0.583 44 H 0.420 0.580 45 H 0.052 0.948 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.617 5.772 -24.453 25.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.100 4.100 3 H 0.073 0.927 4 C -0.010 4.010 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.068 4.068 14 N -0.250 5.250 15 C -0.077 4.077 16 C -0.149 4.149 17 C 0.031 3.969 18 C -0.090 4.090 19 C -0.073 4.073 20 C -0.163 4.163 21 C -0.041 4.041 22 C -0.767 4.767 23 S 2.792 3.208 24 N -0.926 5.926 25 O -0.959 6.959 26 O -0.946 6.946 27 C -0.041 4.041 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.035 0.965 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.050 0.950 36 H 0.105 0.895 37 H 0.056 0.944 38 H 0.135 0.865 39 H 0.097 0.903 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.161 0.839 43 H 0.244 0.756 44 H 0.251 0.749 45 H 0.070 0.930 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.185 5.998 -24.593 25.314 hybrid contribution 1.529 0.321 1.359 2.071 sum 1.715 6.320 -23.234 24.139 Atomic orbital electron populations 1.21590 0.95618 1.00661 1.00238 1.21224 0.96097 0.98956 0.93685 0.92700 1.19118 0.95839 0.95612 0.90403 1.21185 1.34687 1.08297 0.90977 0.92646 1.25012 0.95315 0.95085 0.99078 1.69951 1.39015 1.21211 1.23514 0.86697 0.78952 0.80072 0.82507 1.20242 1.21371 1.20342 1.22418 0.97847 0.97353 0.89197 1.62599 1.56584 1.03520 1.02261 1.22133 0.97725 0.97975 0.89898 1.21166 1.04567 0.89850 0.99326 1.19278 0.91218 0.95509 0.90941 1.19837 0.99633 0.94049 0.95454 1.21481 0.94591 0.93400 0.97870 1.21192 1.01236 1.00452 0.93399 1.20896 0.92205 0.91966 0.99068 1.30332 1.22569 1.06452 1.17377 1.01523 0.72789 0.73247 0.73278 1.53137 1.33380 1.59260 1.46863 1.93575 1.85070 1.60992 1.56281 1.93638 1.50463 1.69939 1.80534 1.21141 0.96462 0.91918 0.94608 0.93880 0.94096 0.92763 0.96532 0.96981 0.93028 0.90744 0.94971 0.89505 0.94367 0.86527 0.90292 0.84867 0.84863 0.83908 0.75610 0.74946 0.92977 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 8.89 37.16 0.33 -2.04 16 2 C -0.08 -1.58 2.27 -90.62 -0.21 -1.79 16 3 H 0.05 1.08 6.45 -51.93 -0.33 0.74 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.10 8.41 -34.44 -0.29 -14.39 16 6 H 0.06 1.49 7.06 -52.48 -0.37 1.12 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 9 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.06 0.95 4.33 -3.83 -0.02 0.93 16 14 N -0.53 -7.31 4.15 -235.90 -0.98 -8.29 16 15 C 0.05 0.58 5.57 -3.73 -0.02 0.55 16 16 C -0.11 -1.19 4.47 -27.93 -0.12 -1.31 16 17 C 0.03 0.36 5.77 -104.60 -0.60 -0.24 16 18 C -0.09 -1.03 5.79 -104.63 -0.61 -1.64 16 19 C -0.05 -0.54 9.65 -39.48 -0.38 -0.92 16 20 C -0.14 -1.29 10.05 -39.65 -0.40 -1.68 16 21 C -0.02 -0.21 9.54 -39.65 -0.38 -0.59 16 22 C -0.68 -6.98 5.88 -39.49 -0.23 -7.21 16 23 S 2.70 25.83 5.50 -107.50 -0.59 25.24 16 24 N -1.25 -6.70 8.37 60.35 0.51 -6.19 16 25 O -0.97 -11.68 16.95 -57.18 -0.97 -12.65 16 26 O -0.96 -12.12 16.11 -57.18 -0.92 -13.04 16 27 C 0.09 1.10 4.93 -4.98 -0.02 1.08 16 28 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.07 1.19 7.89 -51.93 -0.41 0.79 16 35 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 36 H 0.09 0.92 7.85 -51.93 -0.41 0.51 16 37 H 0.04 0.39 8.04 -51.93 -0.42 -0.03 16 38 H 0.12 1.43 7.50 -51.93 -0.39 1.04 16 39 H 0.08 0.61 5.62 -51.93 -0.29 0.32 16 40 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 41 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.14 1.18 7.32 -52.49 -0.38 0.79 16 43 H 0.42 1.45 8.41 -34.47 -0.29 1.16 16 44 H 0.42 1.43 8.96 -34.47 -0.31 1.12 16 45 H 0.05 0.64 8.08 -51.93 -0.42 0.22 16 46 H 0.10 1.34 6.54 -51.93 -0.34 1.00 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -34.93 372.01 -11.60 -46.53 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.79 Total: -0.57 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: -3.17 Total: -27.20 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.26 Total: -40.37 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -1.89 Total: -25.69 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 25.83 SS G_CDS: -0.59 Total: 25.24 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.93 -11.60 -46.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602752201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.188 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds