Wall clock time and date at job start Tue Mar 31 2020 20:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47418 * 2 1 4 4 C 1.52998 * 109.47087 * 120.00359 * 2 1 3 5 5 C 1.50700 * 109.47172 * 295.00036 * 4 2 1 6 6 H 1.08006 * 119.99808 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00213 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99927 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00308 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47006 * 59.99935 * 9 7 5 11 11 H 1.48497 * 109.47135 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.46967 * 299.99872 * 9 7 5 13 13 C 1.52997 * 109.46587 * 240.00141 * 2 1 3 14 14 N 1.46901 * 109.47336 * 65.00622 * 13 2 1 15 15 C 1.47160 * 110.99932 * 189.99909 * 14 13 2 16 16 C 1.52902 * 108.51227 * 165.33751 * 15 14 13 17 17 C 1.50710 * 109.94566 * 50.46828 * 16 15 14 18 18 C 1.37875 * 121.65888 * 343.09561 * 17 16 15 19 19 C 1.38695 * 119.72502 * 180.78601 * 18 17 16 20 20 C 1.38057 * 120.37451 * 359.51568 * 19 18 17 21 21 C 1.38220 * 119.87118 * 0.02562 * 20 19 18 22 22 C 1.38076 * 119.82800 * 0.10118 * 21 20 19 23 23 S 1.76196 * 119.82861 * 179.97438 * 22 21 20 24 24 N 1.65597 * 107.21775 * 115.00093 * 23 22 21 25 25 O 1.42099 * 106.40200 * 1.46006 * 23 22 21 26 26 O 1.42099 * 106.40670 * 228.54561 * 23 22 21 27 27 C 1.46973 * 110.92239 * 67.43113 * 14 13 2 28 28 H 1.09000 * 109.47393 * 59.99551 * 1 2 3 29 29 H 1.08994 * 109.47418 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47154 * 299.99749 * 1 2 3 31 31 H 1.09004 * 109.46939 * 54.99648 * 4 2 1 32 32 H 1.08994 * 109.47208 * 174.99588 * 4 2 1 33 33 H 0.96994 * 120.00039 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47813 * 305.00216 * 13 2 1 35 35 H 1.09007 * 109.47104 * 185.00250 * 13 2 1 36 36 H 1.09001 * 109.63145 * 45.62797 * 15 14 13 37 37 H 1.08998 * 109.63120 * 285.03998 * 15 14 13 38 38 H 1.09000 * 109.38809 * 290.32435 * 16 15 14 39 39 H 1.08999 * 109.31341 * 170.56769 * 16 15 14 40 40 H 1.07998 * 119.81280 * 179.49390 * 19 18 17 41 41 H 1.07998 * 120.06424 * 180.02562 * 20 19 18 42 42 H 1.07999 * 120.08712 * 180.02562 * 21 20 19 43 43 H 0.97001 * 120.00224 * 0.02562 * 24 23 22 44 44 H 0.97005 * 120.00050 * 179.72515 * 24 23 22 45 45 H 1.08993 * 109.88989 * 55.61982 * 27 14 13 46 46 H 1.08998 * 108.76821 * 296.07712 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0569 2.4766 6 1 1.0806 0.9745 2.3757 7 6 1.9932 -0.4019 3.7282 8 7 2.6764 -1.5190 3.8510 9 14 1.4997 0.5631 5.2496 10 1 0.0197 0.6697 5.3096 11 1 1.9946 -0.1371 6.4620 12 1 2.0919 1.9234 5.1866 13 6 2.0399 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 1.9128 -0.7370 -3.6693 16 6 1.1687 -0.0764 -4.8303 17 6 1.4770 1.3984 -4.8658 18 6 2.0237 2.0498 -3.7806 19 6 2.2763 3.4117 -3.8516 20 6 1.9926 4.1151 -5.0052 21 6 1.4533 3.4596 -6.0961 22 6 1.1988 2.1043 -6.0262 23 16 0.5108 1.2689 -7.4166 24 7 1.6467 0.1889 -7.9509 25 8 0.3704 2.2435 -8.4411 26 8 -0.5760 0.4974 -6.9238 27 6 2.3603 1.3236 -2.5047 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6053 -1.7199 1.2950 32 1 3.1263 -0.7996 1.2055 33 1 2.9243 -1.8416 4.7315 34 1 1.6053 -1.7197 -1.2953 35 1 3.1263 -0.7995 -1.2057 36 1 1.5557 -1.7586 -3.5394 37 1 2.9828 -0.7437 -3.8768 38 1 0.0959 -0.2188 -4.7002 39 1 1.4836 -0.5348 -5.7677 40 1 2.6969 3.9249 -2.9995 41 1 2.1916 5.1754 -5.0551 42 1 1.2304 4.0064 -7.0004 43 1 2.5012 0.1195 -7.4972 44 1 1.4558 -0.3775 -8.7150 45 1 3.4364 1.1563 -2.4591 46 1 2.0550 1.9318 -1.6533 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602752201.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:16 Heat of formation + Delta-G solvation = -81.997241 kcal Electronic energy + Delta-G solvation = -27529.088226 eV Core-core repulsion = 23736.801555 eV Total energy + Delta-G solvation = -3792.286671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.31846 -38.88729 -38.28720 -36.93640 -36.51951 -34.69279 -34.14846 -33.61611 -32.41998 -30.44350 -28.87789 -27.55819 -25.80681 -24.72842 -24.12364 -23.61779 -20.83082 -20.56253 -20.29037 -19.01939 -18.50709 -18.38773 -17.44412 -17.25204 -16.75112 -16.64259 -16.32533 -16.17527 -15.80909 -15.55748 -15.18044 -14.81854 -14.57755 -14.40218 -14.06821 -13.89683 -13.42751 -13.40616 -13.24708 -13.22156 -13.12760 -13.06101 -12.93388 -12.84833 -12.74204 -12.56780 -12.40898 -12.19753 -12.02201 -11.76264 -11.60223 -11.38731 -11.32371 -11.05133 -10.86345 -10.51521 -10.34136 -9.71609 -9.26831 -8.16558 -6.25081 -0.63079 -0.25538 0.23606 1.40433 1.42638 1.50227 2.10336 2.35674 2.42285 2.68784 2.88121 3.17093 3.41012 3.52848 3.69122 3.89906 3.97397 4.07359 4.24779 4.28692 4.31507 4.38918 4.45055 4.53447 4.54046 4.59680 4.69120 4.76499 4.88208 4.90892 4.94476 5.01584 5.06143 5.14951 5.25027 5.27441 5.30430 5.39355 5.48750 5.52094 5.57066 5.78369 5.81423 5.90543 6.08334 6.10517 6.30354 6.33177 6.90822 7.43028 8.95179 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023719 B = 0.002467 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.210148 B =11346.199925 C =11909.222884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 H 0.055 0.945 4 C 0.034 3.966 5 C -0.528 4.528 6 H 0.059 0.941 7 C 0.000 4.000 8 N -0.935 5.935 9 Si 0.957 3.043 10 H -0.270 1.270 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.071 3.929 14 N -0.535 5.535 15 C 0.049 3.951 16 C -0.111 4.111 17 C 0.019 3.981 18 C -0.106 4.106 19 C -0.059 4.059 20 C -0.140 4.140 21 C -0.029 4.029 22 C -0.682 4.682 23 S 2.722 3.278 24 N -1.235 6.235 25 O -0.995 6.995 26 O -0.990 6.990 27 C 0.088 3.912 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.035 0.965 31 H -0.010 1.010 32 H -0.012 1.012 33 H 0.262 0.738 34 H 0.074 0.926 35 H 0.030 0.970 36 H 0.093 0.907 37 H 0.053 0.947 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.149 0.851 41 H 0.163 0.837 42 H 0.156 0.844 43 H 0.428 0.572 44 H 0.432 0.568 45 H 0.056 0.944 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.838 7.130 -25.661 26.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.090 4.090 3 H 0.074 0.926 4 C -0.003 4.003 5 C -0.566 4.566 6 H 0.077 0.923 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.782 3.218 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.192 1.192 13 C -0.056 4.056 14 N -0.259 5.259 15 C -0.079 4.079 16 C -0.148 4.148 17 C 0.018 3.982 18 C -0.107 4.107 19 C -0.078 4.078 20 C -0.159 4.159 21 C -0.048 4.048 22 C -0.770 4.770 23 S 2.812 3.188 24 N -0.916 5.916 25 O -0.985 6.985 26 O -0.979 6.979 27 C -0.040 4.040 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.009 0.991 32 H 0.007 0.993 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.048 0.952 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.124 0.876 40 H 0.167 0.833 41 H 0.180 0.820 42 H 0.174 0.826 43 H 0.258 0.742 44 H 0.265 0.735 45 H 0.074 0.926 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.406 7.360 -25.827 26.859 hybrid contribution 1.495 -0.086 1.673 2.245 sum 1.901 7.274 -24.154 25.297 Atomic orbital electron populations 1.21474 0.95092 1.00374 1.00127 1.21016 0.96344 0.98590 0.93061 0.92648 1.18996 0.94178 0.94657 0.92514 1.21606 1.34340 1.08547 0.92140 0.92285 1.25901 0.95312 0.96070 1.02492 1.70084 1.40287 1.22877 1.24294 0.85621 0.78859 0.78882 0.78425 1.19462 1.21066 1.19216 1.22111 0.97478 0.97063 0.88952 1.62508 1.57044 1.04042 1.02291 1.22231 0.98834 0.97997 0.88821 1.21168 1.03391 0.89984 1.00249 1.19350 0.91796 0.95816 0.91272 1.19837 1.00968 0.94874 0.94991 1.21731 0.94271 0.92873 0.98887 1.21535 0.99998 1.01824 0.92520 1.21212 0.91820 0.91868 0.99914 1.30326 1.22618 1.06939 1.17130 1.00685 0.72617 0.72927 0.72559 1.52734 1.33100 1.58495 1.47234 1.93545 1.85740 1.62122 1.57061 1.93605 1.52658 1.70622 1.81021 1.21095 0.96579 0.91248 0.95047 0.92113 0.94458 0.94545 0.99114 0.99325 0.92966 0.90782 0.95177 0.88883 0.92892 0.88302 0.87635 0.83298 0.81993 0.82619 0.74171 0.73498 0.92584 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.34 8.89 71.98 0.64 -3.70 16 2 C -0.07 -2.82 2.27 -10.79 -0.02 -2.84 16 3 H 0.06 2.18 6.45 -2.39 -0.02 2.17 16 4 C 0.03 1.75 4.45 29.85 0.13 1.88 16 5 C -0.53 -29.45 8.41 25.60 0.22 -29.24 16 6 H 0.06 3.18 7.06 -2.91 -0.02 3.16 16 7 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 8 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 9 Si 0.96 44.14 29.54 68.60 2.03 46.17 16 10 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 C 0.07 2.30 4.33 86.30 0.37 2.67 16 14 N -0.53 -14.44 4.15 -900.26 -3.74 -18.18 16 15 C 0.05 1.04 5.57 86.22 0.48 1.52 16 16 C -0.11 -2.20 4.47 29.82 0.13 -2.07 16 17 C 0.02 0.41 5.77 -19.85 -0.11 0.29 16 18 C -0.11 -2.31 5.79 -19.87 -0.12 -2.43 16 19 C -0.06 -1.06 9.65 22.34 0.22 -0.84 16 20 C -0.14 -2.14 10.05 22.22 0.22 -1.92 16 21 C -0.03 -0.49 9.54 22.23 0.21 -0.28 16 22 C -0.68 -12.91 5.88 22.33 0.13 -12.77 16 23 S 2.72 48.35 5.50 -56.49 -0.31 48.04 16 24 N -1.23 -10.57 8.37 37.02 0.31 -10.26 16 25 O -1.00 -22.69 16.95 -128.00 -2.17 -24.86 16 26 O -0.99 -24.32 16.11 -128.00 -2.06 -26.38 16 27 C 0.09 2.17 4.93 85.52 0.42 2.59 16 28 H 0.06 2.09 7.75 -2.39 -0.02 2.08 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.04 1.49 6.95 -2.39 -0.02 1.47 16 31 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 32 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 34 H 0.07 2.37 7.89 -2.39 -0.02 2.36 16 35 H 0.03 0.97 8.06 -2.38 -0.02 0.95 16 36 H 0.09 1.84 7.85 -2.39 -0.02 1.82 16 37 H 0.05 0.98 8.04 -2.39 -0.02 0.96 16 38 H 0.10 2.37 7.50 -2.39 -0.02 2.35 16 39 H 0.11 1.43 5.62 -2.39 -0.01 1.42 16 40 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 41 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 42 H 0.16 2.22 7.32 -2.91 -0.02 2.20 16 43 H 0.43 1.88 8.41 -96.74 -0.81 1.07 16 44 H 0.43 1.97 8.96 -96.74 -0.87 1.11 16 45 H 0.06 1.32 8.08 -2.39 -0.02 1.30 16 46 H 0.09 2.30 6.54 -2.39 -0.02 2.28 16 Total: -1.00 -75.54 372.01 -2.95 -78.49 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -0.67 Total: 9.93 kcal Atomic # 6 Polarization: -50.08 SS G_CDS: 3.39 Total: -46.69 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -3.15 Total: -84.70 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -4.23 Total: -51.24 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 48.35 SS G_CDS: -0.31 Total: 48.04 kcal Total: -75.54 -2.95 -78.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602752201.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.511 kcal (2) G-P(sol) polarization free energy of solvation -75.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds