Wall clock time and date at job start Tue Mar 31 2020 20:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46967 * 2 1 4 4 C 1.52993 * 109.47004 * 240.00067 * 2 1 3 5 5 N 1.46507 * 109.47111 * 174.36270 * 4 2 1 6 6 C 1.36874 * 126.39747 * 269.71520 * 5 4 2 7 7 C 1.34680 * 106.81501 * 179.84152 * 6 5 4 8 8 N 1.34125 * 108.01906 * 0.41781 * 7 6 5 9 9 C 1.30499 * 109.25866 * 359.73493 * 8 7 6 10 10 N 1.46494 * 109.47243 * 119.99883 * 2 1 3 11 11 C 1.34783 * 120.00082 * 273.81007 * 10 2 1 12 12 O 1.21663 * 119.99983 * 4.83574 * 11 10 2 13 13 C 1.46891 * 119.99980 * 184.84067 * 11 10 2 14 14 C 1.36122 * 125.43832 * 186.10265 * 13 11 10 15 15 C 1.41701 * 107.74859 * 180.27745 * 14 13 11 16 16 C 1.40019 * 133.34962 * 179.77761 * 15 14 13 17 17 C 1.36576 * 119.83336 * 179.97438 * 16 15 14 18 18 C 1.38861 * 120.59832 * 359.95956 * 17 16 15 19 19 C 1.37848 * 120.63217 * 0.02562 * 18 17 16 20 20 C 1.39094 * 119.81203 * 0.02562 * 19 18 17 21 21 N 1.37833 * 133.15873 * 180.02562 * 20 19 18 22 22 C 1.36888 * 125.62244 * 359.96825 * 21 20 19 23 23 H 1.08004 * 120.00291 * 224.30837 * 22 21 20 24 24 C 1.39007 * 120.00086 * 44.31376 * 22 21 20 25 25 N 1.31354 * 120.00439 * 198.61079 * 24 22 21 26 26 Si 1.86806 * 120.00086 * 18.61107 * 24 22 21 27 27 H 1.48496 * 109.46881 * 264.58551 * 26 24 22 28 28 H 1.48505 * 109.46784 * 24.58212 * 26 24 22 29 29 H 1.48496 * 109.47028 * 144.58066 * 26 24 22 30 30 H 1.08999 * 109.46989 * 305.01641 * 1 2 3 31 31 H 1.08996 * 109.47119 * 65.01705 * 1 2 3 32 32 H 1.08995 * 109.46992 * 185.02058 * 1 2 3 33 33 H 1.08998 * 109.47100 * 294.36179 * 4 2 1 34 34 H 1.09005 * 109.47514 * 54.36459 * 4 2 1 35 35 H 1.08000 * 126.59510 * 359.97438 * 6 5 4 36 36 H 1.08003 * 125.98412 * 180.11948 * 7 6 5 37 37 H 1.08002 * 125.64995 * 180.02562 * 9 8 7 38 38 H 0.97002 * 120.00176 * 93.80563 * 10 2 1 39 39 H 1.08002 * 126.12668 * 0.02562 * 14 13 11 40 40 H 1.08007 * 120.08328 * 359.97438 * 16 15 14 41 41 H 1.08001 * 119.70512 * 179.97438 * 17 16 15 42 42 H 1.07997 * 119.68292 * 180.02562 * 18 17 16 43 43 H 1.08000 * 120.09413 * 179.97438 * 19 18 17 44 44 H 0.97000 * 120.00061 * 174.98898 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.4987 -0.6048 -1.3190 6 6 4.2054 0.3883 -1.9418 7 6 5.5106 0.1105 -1.7599 8 7 5.5984 -1.0262 -1.0534 9 6 4.3973 -1.4605 -0.7858 10 7 2.0184 -0.6906 1.1961 11 6 2.1699 -0.0125 2.3511 12 8 1.8187 1.1500 2.4246 13 6 2.7591 -0.6771 3.5211 14 6 2.8561 -0.1402 4.7681 15 6 3.4887 -1.0956 5.6018 16 6 3.8520 -1.1008 6.9540 17 6 4.4650 -2.1979 7.4887 18 6 4.7316 -3.3116 6.7033 19 6 4.3831 -3.3303 5.3697 20 6 3.7588 -2.2243 4.8025 21 7 3.3009 -1.9486 3.5320 22 6 3.3745 -2.7932 2.4573 23 1 3.6875 -2.4163 1.4947 24 6 3.0463 -4.1359 2.6046 25 7 3.4504 -5.0125 1.7138 26 14 2.0304 -4.6938 4.0697 27 1 2.9350 -5.1714 5.1461 28 1 1.2204 -3.5553 4.5727 29 1 1.1284 -5.7980 3.6548 30 1 -0.3633 0.5897 0.8416 31 1 -0.3633 0.4340 -0.9315 32 1 -0.3633 -1.0237 0.0899 33 1 1.7614 -1.7738 -1.2002 34 1 1.5966 -0.2690 -2.1364 35 1 3.7952 1.2334 -2.4746 36 1 6.3410 0.6975 -2.1237 37 1 4.1609 -2.3556 -0.2296 38 1 2.2326 -1.6358 1.1570 39 1 2.5159 0.8401 5.0676 40 1 3.6481 -0.2393 7.5726 41 1 4.7447 -2.1995 8.5318 42 1 5.2166 -4.1713 7.1415 43 1 4.5949 -4.2010 4.7668 44 1 3.2844 -5.9579 1.8535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609164836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:03 Heat of formation + Delta-G solvation = 96.203515 kcal Electronic energy + Delta-G solvation = -29899.921483 eV Core-core repulsion = 26012.210976 eV Total energy + Delta-G solvation = -3887.710506 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.77133 -40.86369 -38.93893 -36.32778 -36.04850 -33.77828 -32.92965 -31.47818 -30.81744 -29.24894 -29.12096 -28.20569 -26.41926 -25.05355 -23.74821 -21.56764 -21.26732 -21.08869 -20.71885 -20.12258 -19.34907 -18.49758 -17.45176 -16.73140 -16.08697 -15.92565 -15.24176 -14.97271 -14.66293 -14.42976 -14.28784 -13.90270 -13.78829 -13.53148 -13.45044 -13.26200 -13.06515 -12.95762 -12.82179 -12.62027 -12.33980 -12.19446 -12.09367 -11.98358 -11.49593 -11.25081 -11.04156 -10.98790 -10.58311 -10.35092 -9.97022 -9.65167 -9.61723 -9.55997 -9.38810 -8.81226 -8.69696 -8.21401 -7.44674 -7.10453 -6.99769 -4.82472 1.52966 2.32467 2.42030 2.76080 2.91550 2.97933 3.04346 3.11398 3.50936 3.57390 3.75507 3.97920 4.04827 4.47041 4.61399 4.69409 4.73507 4.99787 5.08284 5.19342 5.28784 5.41396 5.47117 5.56151 5.65578 5.67455 5.70360 5.84028 5.90264 5.99088 6.12801 6.18081 6.20114 6.36047 6.50242 6.54474 6.70047 6.77473 6.84582 7.01138 7.04700 7.18238 7.28671 7.40352 7.48652 7.57247 7.62103 7.96727 8.04828 8.42998 8.47305 8.75670 8.91700 9.91623 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.004703 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.150283 B = 5952.690094 C = 6376.888347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 H 0.091 0.909 4 C 0.096 3.904 5 N -0.457 5.457 6 C -0.068 4.068 7 C -0.033 4.033 8 N -0.495 5.495 9 C 0.201 3.799 10 N -0.724 5.724 11 C 0.600 3.400 12 O -0.553 6.553 13 C -0.013 4.013 14 C -0.158 4.158 15 C -0.126 4.126 16 C -0.076 4.076 17 C -0.159 4.159 18 C -0.128 4.128 19 C -0.104 4.104 20 C 0.067 3.933 21 N -0.274 5.274 22 C -0.379 4.379 23 H 0.124 0.876 24 C 0.088 3.912 25 N -0.819 5.819 26 Si 0.872 3.128 27 H -0.245 1.245 28 H -0.254 1.254 29 H -0.281 1.281 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.211 0.789 38 H 0.418 0.582 39 H 0.138 0.862 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 3.682 -3.533 6.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.020 3.980 3 H 0.109 0.891 4 C -0.027 4.027 5 N -0.140 5.140 6 C -0.200 4.200 7 C -0.181 4.181 8 N -0.213 5.213 9 C -0.082 4.082 10 N -0.384 5.384 11 C 0.390 3.610 12 O -0.432 6.432 13 C -0.128 4.128 14 C -0.185 4.185 15 C -0.131 4.131 16 C -0.094 4.094 17 C -0.179 4.179 18 C -0.148 4.148 19 C -0.123 4.123 20 C -0.047 4.047 21 N 0.061 4.939 22 C -0.506 4.506 23 H 0.140 0.860 24 C -0.128 4.128 25 N -0.447 5.447 26 Si 0.696 3.304 27 H -0.169 1.169 28 H -0.177 1.177 29 H -0.207 1.207 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.186 0.814 36 H 0.181 0.819 37 H 0.227 0.773 38 H 0.264 0.736 39 H 0.155 0.845 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.897 3.656 -3.798 6.555 hybrid contribution -1.065 -0.526 0.271 1.218 sum -4.962 3.129 -3.527 6.845 Atomic orbital electron populations 1.22138 0.94218 1.02922 1.02741 1.21246 0.94659 0.97865 0.84245 0.89086 1.22270 0.77583 1.03687 0.99196 1.45536 1.07094 1.20388 1.40948 1.22608 0.93196 0.97164 1.07062 1.22264 0.95141 0.96989 1.03723 1.70338 1.22714 1.11765 1.16452 1.25426 0.83574 0.98164 1.01025 1.46729 1.67508 1.15269 1.08905 1.17172 0.76964 0.85144 0.81765 1.90723 1.51924 1.16553 1.84017 1.20173 1.07666 0.89677 0.95236 1.20468 1.07397 0.99795 0.90824 1.18007 1.06232 0.94797 0.94042 1.20181 0.98550 0.97768 0.92941 1.20367 1.03956 0.94466 0.99075 1.20606 1.02653 0.98409 0.93131 1.20189 1.00324 0.96682 0.95152 1.18424 1.03083 0.96707 0.86458 1.40206 1.36894 1.10322 1.06518 1.19245 1.50235 0.90471 0.90619 0.85966 1.25484 0.94330 0.95316 0.97718 1.69625 1.37384 1.03330 1.34390 0.86877 0.81430 0.80093 0.82041 1.16930 1.17705 1.20712 0.91094 0.91723 0.91906 0.88073 0.87765 0.81396 0.81888 0.77262 0.73631 0.84455 0.87087 0.87207 0.86917 0.86349 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.50 37.16 0.35 -1.53 16 2 C 0.13 1.74 2.79 -67.94 -0.19 1.55 16 3 H 0.09 1.39 7.61 -51.93 -0.40 1.00 16 4 C 0.10 1.10 5.65 -4.04 -0.02 1.08 16 5 N -0.46 -6.65 2.70 -118.57 -0.32 -6.97 16 6 C -0.07 -0.93 11.58 -16.56 -0.19 -1.12 16 7 C -0.03 -0.53 11.87 -17.81 -0.21 -0.74 16 8 N -0.50 -9.56 11.25 -14.66 -0.16 -9.72 16 9 C 0.20 3.59 11.94 -90.37 -1.08 2.51 16 10 N -0.72 -12.94 4.56 -55.05 -0.25 -13.19 16 11 C 0.60 12.72 7.74 -12.76 -0.10 12.62 16 12 O -0.55 -12.40 16.54 5.22 0.09 -12.31 16 13 C -0.01 -0.30 6.77 -82.25 -0.56 -0.86 16 14 C -0.16 -3.44 10.55 -39.02 -0.41 -3.85 16 15 C -0.13 -2.73 6.16 -106.90 -0.66 -3.39 16 16 C -0.08 -1.40 10.06 -39.51 -0.40 -1.80 16 17 C -0.16 -2.76 9.97 -39.95 -0.40 -3.16 16 18 C -0.13 -2.36 10.02 -39.49 -0.40 -2.76 16 19 C -0.10 -2.23 6.87 -39.41 -0.27 -2.50 16 20 C 0.07 1.54 5.16 -83.84 -0.43 1.11 16 21 N -0.27 -6.40 2.38 -56.08 -0.13 -6.54 16 22 C -0.38 -8.79 8.04 -15.01 -0.12 -8.91 16 23 H 0.12 2.81 4.16 -52.48 -0.22 2.59 16 24 C 0.09 2.01 4.93 -17.47 -0.09 1.93 16 25 N -0.82 -18.99 13.95 55.50 0.77 -18.22 16 26 Si 0.87 18.87 24.37 -169.99 -4.14 14.73 16 27 H -0.25 -5.15 5.72 56.52 0.32 -4.83 16 28 H -0.25 -5.93 7.11 56.52 0.40 -5.53 16 29 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.17 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.16 2.13 8.06 -52.48 -0.42 1.71 16 37 H 0.21 3.96 6.00 -52.49 -0.31 3.64 16 38 H 0.42 7.80 4.69 -40.82 -0.19 7.60 16 39 H 0.14 2.74 8.06 -52.49 -0.42 2.31 16 40 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 42 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.12 2.58 6.02 -52.49 -0.32 2.26 16 44 H 0.29 6.30 8.31 -40.82 -0.34 5.96 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -29.09 361.13 -9.18 -38.27 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: -5.30 Total: 18.30 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -5.17 Total: -9.80 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.10 Total: -54.63 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.31 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.14 Total: 14.73 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.09 -9.18 -38.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609164836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.473 kcal (2) G-P(sol) polarization free energy of solvation -29.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds