Wall clock time and date at job start Tue Mar 31 2020 20:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46967 * 2 1 4 4 C 1.52993 * 109.47004 * 240.00067 * 2 1 3 5 5 N 1.46507 * 109.47111 * 174.36270 * 4 2 1 6 6 C 1.36874 * 126.39747 * 269.71520 * 5 4 2 7 7 C 1.34680 * 106.81501 * 179.84152 * 6 5 4 8 8 N 1.34125 * 108.01906 * 0.41781 * 7 6 5 9 9 C 1.30499 * 109.25866 * 359.73493 * 8 7 6 10 10 N 1.46494 * 109.47243 * 119.99883 * 2 1 3 11 11 C 1.34783 * 120.00082 * 273.81007 * 10 2 1 12 12 O 1.21663 * 119.99983 * 4.83574 * 11 10 2 13 13 C 1.46891 * 119.99980 * 184.84067 * 11 10 2 14 14 C 1.36122 * 125.43832 * 186.10265 * 13 11 10 15 15 C 1.41701 * 107.74859 * 180.27745 * 14 13 11 16 16 C 1.40019 * 133.34962 * 179.77761 * 15 14 13 17 17 C 1.36576 * 119.83336 * 179.97438 * 16 15 14 18 18 C 1.38861 * 120.59832 * 359.95956 * 17 16 15 19 19 C 1.37848 * 120.63217 * 0.02562 * 18 17 16 20 20 C 1.39094 * 119.81203 * 0.02562 * 19 18 17 21 21 N 1.37833 * 133.15873 * 180.02562 * 20 19 18 22 22 C 1.36888 * 125.62244 * 359.96825 * 21 20 19 23 23 H 1.08004 * 120.00291 * 224.30837 * 22 21 20 24 24 C 1.39007 * 120.00086 * 44.31376 * 22 21 20 25 25 N 1.31354 * 120.00439 * 198.61079 * 24 22 21 26 26 Si 1.86806 * 120.00086 * 18.61107 * 24 22 21 27 27 H 1.48496 * 109.46881 * 264.58551 * 26 24 22 28 28 H 1.48505 * 109.46784 * 24.58212 * 26 24 22 29 29 H 1.48496 * 109.47028 * 144.58066 * 26 24 22 30 30 H 1.08999 * 109.46989 * 305.01641 * 1 2 3 31 31 H 1.08996 * 109.47119 * 65.01705 * 1 2 3 32 32 H 1.08995 * 109.46992 * 185.02058 * 1 2 3 33 33 H 1.08998 * 109.47100 * 294.36179 * 4 2 1 34 34 H 1.09005 * 109.47514 * 54.36459 * 4 2 1 35 35 H 1.08000 * 126.59510 * 359.97438 * 6 5 4 36 36 H 1.08003 * 125.98412 * 180.11948 * 7 6 5 37 37 H 1.08002 * 125.64995 * 180.02562 * 9 8 7 38 38 H 0.97002 * 120.00176 * 93.80563 * 10 2 1 39 39 H 1.08002 * 126.12668 * 0.02562 * 14 13 11 40 40 H 1.08007 * 120.08328 * 359.97438 * 16 15 14 41 41 H 1.08001 * 119.70512 * 179.97438 * 17 16 15 42 42 H 1.07997 * 119.68292 * 180.02562 * 18 17 16 43 43 H 1.08000 * 120.09413 * 179.97438 * 19 18 17 44 44 H 0.97000 * 120.00061 * 174.98898 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.4987 -0.6048 -1.3190 6 6 4.2054 0.3883 -1.9418 7 6 5.5106 0.1105 -1.7599 8 7 5.5984 -1.0262 -1.0534 9 6 4.3973 -1.4605 -0.7858 10 7 2.0184 -0.6906 1.1961 11 6 2.1699 -0.0125 2.3511 12 8 1.8187 1.1500 2.4246 13 6 2.7591 -0.6771 3.5211 14 6 2.8561 -0.1402 4.7681 15 6 3.4887 -1.0956 5.6018 16 6 3.8520 -1.1008 6.9540 17 6 4.4650 -2.1979 7.4887 18 6 4.7316 -3.3116 6.7033 19 6 4.3831 -3.3303 5.3697 20 6 3.7588 -2.2243 4.8025 21 7 3.3009 -1.9486 3.5320 22 6 3.3745 -2.7932 2.4573 23 1 3.6875 -2.4163 1.4947 24 6 3.0463 -4.1359 2.6046 25 7 3.4504 -5.0125 1.7138 26 14 2.0304 -4.6938 4.0697 27 1 2.9350 -5.1714 5.1461 28 1 1.2204 -3.5553 4.5727 29 1 1.1284 -5.7980 3.6548 30 1 -0.3633 0.5897 0.8416 31 1 -0.3633 0.4340 -0.9315 32 1 -0.3633 -1.0237 0.0899 33 1 1.7614 -1.7738 -1.2002 34 1 1.5966 -0.2690 -2.1364 35 1 3.7952 1.2334 -2.4746 36 1 6.3410 0.6975 -2.1237 37 1 4.1609 -2.3556 -0.2296 38 1 2.2326 -1.6358 1.1570 39 1 2.5159 0.8401 5.0676 40 1 3.6481 -0.2393 7.5726 41 1 4.7447 -2.1995 8.5318 42 1 5.2166 -4.1713 7.1415 43 1 4.5949 -4.2010 4.7668 44 1 3.2844 -5.9579 1.8535 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609164836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:02 Heat of formation + Delta-G solvation = 80.637172 kcal Electronic energy + Delta-G solvation = -29900.596490 eV Core-core repulsion = 26012.210976 eV Total energy + Delta-G solvation = -3888.385514 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.99258 -42.47432 -40.45366 -37.82020 -37.42276 -35.47071 -34.27149 -33.12612 -32.10622 -30.77624 -30.34143 -29.75002 -27.45160 -26.76698 -25.22670 -22.89214 -22.80417 -22.37413 -22.01312 -21.51657 -20.94339 -20.15036 -18.74590 -18.13498 -17.60852 -17.40106 -16.74951 -16.40083 -16.14032 -16.03319 -15.70820 -15.27350 -15.06999 -15.01894 -14.88381 -14.76827 -14.52023 -14.34645 -14.11462 -13.99574 -13.68666 -13.57307 -13.29061 -13.16833 -13.01108 -12.76232 -12.49317 -12.29335 -12.27008 -11.94599 -11.54592 -11.32693 -11.20769 -10.91380 -10.67289 -10.45123 -10.11835 -9.40932 -9.06670 -8.84511 -8.63558 -6.59518 -0.06176 0.87603 1.08928 1.13395 1.19666 1.31399 1.34620 1.87412 2.00245 2.15518 2.25862 2.28272 2.41921 2.78551 3.12538 3.53542 3.76896 3.86382 3.91115 3.95503 4.03686 4.19115 4.26299 4.27861 4.35981 4.49063 4.55890 4.59197 4.64317 4.73150 4.75775 4.78017 4.90116 5.01828 5.10329 5.23661 5.24510 5.30752 5.36271 5.48345 5.66630 5.71758 5.79355 5.86987 5.96849 6.02447 6.25623 6.36632 6.46094 6.75453 7.16312 7.18579 7.21848 8.18414 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011901 B = 0.004703 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2352.150283 B = 5952.690094 C = 6376.888347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.121 3.879 3 H 0.079 0.921 4 C 0.097 3.903 5 N -0.451 5.451 6 C -0.044 4.044 7 C -0.065 4.065 8 N -0.538 5.538 9 C 0.175 3.825 10 N -0.718 5.718 11 C 0.594 3.406 12 O -0.574 6.574 13 C -0.040 4.040 14 C -0.165 4.165 15 C -0.145 4.145 16 C -0.077 4.077 17 C -0.151 4.151 18 C -0.113 4.113 19 C -0.139 4.139 20 C 0.042 3.958 21 N -0.289 5.289 22 C -0.386 4.386 23 H 0.116 0.884 24 C 0.071 3.929 25 N -0.842 5.842 26 Si 0.909 3.091 27 H -0.235 1.235 28 H -0.283 1.283 29 H -0.273 1.273 30 H 0.046 0.954 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.106 0.894 34 H 0.154 0.846 35 H 0.215 0.785 36 H 0.184 0.816 37 H 0.190 0.810 38 H 0.414 0.586 39 H 0.150 0.850 40 H 0.143 0.857 41 H 0.156 0.844 42 H 0.146 0.854 43 H 0.106 0.894 44 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.919 4.432 -3.045 7.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.017 3.983 3 H 0.097 0.903 4 C -0.025 4.025 5 N -0.132 5.132 6 C -0.178 4.178 7 C -0.212 4.212 8 N -0.257 5.257 9 C -0.108 4.108 10 N -0.375 5.375 11 C 0.383 3.617 12 O -0.456 6.456 13 C -0.154 4.154 14 C -0.192 4.192 15 C -0.150 4.150 16 C -0.095 4.095 17 C -0.170 4.170 18 C -0.133 4.133 19 C -0.159 4.159 20 C -0.071 4.071 21 N 0.044 4.956 22 C -0.512 4.512 23 H 0.133 0.867 24 C -0.143 4.143 25 N -0.471 5.471 26 Si 0.733 3.267 27 H -0.159 1.159 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.065 0.935 31 H 0.124 0.876 32 H 0.084 0.916 33 H 0.124 0.876 34 H 0.172 0.828 35 H 0.231 0.769 36 H 0.201 0.799 37 H 0.207 0.793 38 H 0.259 0.741 39 H 0.168 0.832 40 H 0.161 0.839 41 H 0.173 0.827 42 H 0.164 0.836 43 H 0.124 0.876 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.621 4.376 -3.332 7.184 hybrid contribution -0.788 -0.665 0.214 1.053 sum -5.409 3.711 -3.118 7.263 Atomic orbital electron populations 1.22077 0.92112 1.03061 1.03921 1.21545 0.96268 0.97046 0.83480 0.90264 1.22558 0.75818 1.04367 0.99754 1.45668 1.08057 1.19668 1.39849 1.23294 0.92444 0.97005 1.05014 1.22765 0.97206 0.96724 1.04460 1.70235 1.23973 1.13672 1.17791 1.24988 0.84344 0.98820 1.02650 1.46769 1.66408 1.15024 1.09336 1.17164 0.77107 0.85024 0.82450 1.90685 1.53207 1.17164 1.84504 1.20603 1.08462 0.89880 0.96452 1.20746 1.07235 1.00372 0.90870 1.18400 1.06755 0.94314 0.95562 1.20631 0.97660 0.99458 0.91790 1.20874 1.02086 0.93062 1.00990 1.21120 1.00459 0.99848 0.91891 1.20315 1.02603 0.96334 0.96659 1.18892 1.03714 0.97879 0.86579 1.40263 1.37967 1.10557 1.06794 1.19274 1.50310 0.90825 0.90791 0.86688 1.25737 0.94592 0.95289 0.98643 1.69645 1.38521 1.03714 1.35227 0.86351 0.80429 0.78769 0.81127 1.15870 1.20811 1.19858 0.93468 0.87578 0.91629 0.87568 0.82815 0.76877 0.79924 0.79337 0.74111 0.83239 0.83897 0.82685 0.83623 0.87627 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.50 71.98 0.68 -2.62 16 2 C 0.12 3.24 2.79 44.99 0.13 3.36 16 3 H 0.08 2.34 7.61 -2.39 -0.02 2.32 16 4 C 0.10 2.01 5.65 86.38 0.49 2.50 16 5 N -0.45 -12.68 2.70 -529.05 -1.43 -14.11 16 6 C -0.04 -1.13 11.58 83.09 0.96 -0.17 16 7 C -0.06 -2.02 11.87 83.53 0.99 -1.03 16 8 N -0.54 -21.51 11.25 -200.30 -2.25 -23.76 16 9 C 0.17 6.51 11.94 180.26 2.15 8.66 16 10 N -0.72 -26.38 4.56 -446.32 -2.04 -28.42 16 11 C 0.59 26.10 7.74 86.51 0.67 26.77 16 12 O -0.57 -26.42 16.54 -4.23 -0.07 -26.49 16 13 C -0.04 -1.90 6.77 39.91 0.27 -1.63 16 14 C -0.16 -7.33 10.55 22.63 0.24 -7.10 16 15 C -0.15 -6.29 6.16 -21.34 -0.13 -6.43 16 16 C -0.08 -2.66 10.06 22.31 0.22 -2.43 16 17 C -0.15 -4.66 9.97 22.03 0.22 -4.44 16 18 C -0.11 -3.90 10.02 22.33 0.22 -3.67 16 19 C -0.14 -5.95 6.87 22.38 0.15 -5.80 16 20 C 0.04 1.99 5.16 39.06 0.20 2.19 16 21 N -0.29 -14.09 2.38 -331.34 -0.79 -14.88 16 22 C -0.39 -18.78 8.04 84.09 0.68 -18.10 16 23 H 0.12 5.66 4.16 -2.91 -0.01 5.65 16 24 C 0.07 3.40 4.93 84.95 0.42 3.82 16 25 N -0.84 -40.34 13.95 21.67 0.30 -40.03 16 26 Si 0.91 39.75 24.37 68.60 1.67 41.42 16 27 H -0.24 -9.77 5.72 99.48 0.57 -9.20 16 28 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 29 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 30 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.15 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.21 3.32 8.06 -2.91 -0.02 3.29 16 36 H 0.18 4.66 8.06 -2.91 -0.02 4.64 16 37 H 0.19 7.74 6.00 -2.91 -0.02 7.72 16 38 H 0.41 16.19 4.69 -92.71 -0.44 15.76 16 39 H 0.15 6.05 8.06 -2.91 -0.02 6.02 16 40 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 41 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 42 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 43 H 0.11 4.69 6.02 -2.91 -0.02 4.67 16 44 H 0.30 13.12 8.31 -92.71 -0.77 12.35 16 Total: -1.00 -68.00 361.13 4.44 -63.56 By element: Atomic # 1 Polarization: 48.36 SS G_CDS: 0.47 Total: 48.83 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 8.57 Total: -6.11 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -6.21 Total: -121.21 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.07 Total: -26.49 kcal Atomic # 14 Polarization: 39.75 SS G_CDS: 1.67 Total: 41.42 kcal Total: -68.00 4.44 -63.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609164836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.201 kcal (2) G-P(sol) polarization free energy of solvation -68.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds