Wall clock time and date at job start Tue Mar 31 2020 20:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47059 * 2 1 4 4 C 1.53003 * 109.47186 * 119.99860 * 2 1 3 5 5 N 1.46496 * 109.46842 * 183.32140 * 4 2 1 6 6 C 1.36882 * 126.39464 * 269.71149 * 5 4 2 7 7 C 1.34674 * 106.81730 * 179.84406 * 6 5 4 8 8 N 1.34129 * 108.01968 * 0.42421 * 7 6 5 9 9 C 1.30497 * 109.25579 * 359.72976 * 8 7 6 10 10 N 1.46498 * 109.47244 * 240.00180 * 2 1 3 11 11 C 1.34773 * 120.00200 * 85.42537 * 10 2 1 12 12 O 1.21664 * 119.99990 * 5.50268 * 11 10 2 13 13 C 1.46893 * 120.00078 * 185.49947 * 11 10 2 14 14 C 1.36116 * 125.43931 * 186.31517 * 13 11 10 15 15 C 1.41696 * 107.75154 * 180.25507 * 14 13 11 16 16 C 1.40023 * 133.35371 * 179.80527 * 15 14 13 17 17 C 1.36577 * 119.83117 * 179.97438 * 16 15 14 18 18 C 1.38856 * 120.59999 * 359.95113 * 17 16 15 19 19 C 1.37845 * 120.63345 * 0.02562 * 18 17 16 20 20 C 1.39085 * 119.81255 * 0.02562 * 19 18 17 21 21 N 1.37834 * 133.16051 * 180.02562 * 20 19 18 22 22 C 1.36889 * 125.62399 * 359.97438 * 21 20 19 23 23 H 1.08005 * 120.00425 * 224.14640 * 22 21 20 24 24 C 1.39012 * 119.99717 * 44.14454 * 22 21 20 25 25 N 1.31357 * 120.00209 * 198.69353 * 24 22 21 26 26 Si 1.86804 * 120.00161 * 18.69231 * 24 22 21 27 27 H 1.48503 * 109.47015 * 264.64358 * 26 24 22 28 28 H 1.48495 * 109.46965 * 24.64411 * 26 24 22 29 29 H 1.48496 * 109.47170 * 144.64270 * 26 24 22 30 30 H 1.09002 * 109.47139 * 184.75653 * 1 2 3 31 31 H 1.09007 * 109.47097 * 304.75122 * 1 2 3 32 32 H 1.08998 * 109.47548 * 64.75447 * 1 2 3 33 33 H 1.09005 * 109.46783 * 303.31599 * 4 2 1 34 34 H 1.09000 * 109.46870 * 63.31753 * 4 2 1 35 35 H 1.07995 * 126.59325 * 359.97438 * 6 5 4 36 36 H 1.07998 * 125.99075 * 180.11349 * 7 6 5 37 37 H 1.08001 * 125.65376 * 180.02562 * 9 8 7 38 38 H 0.97000 * 119.99755 * 265.43241 * 10 2 1 39 39 H 1.08003 * 126.12648 * 0.02562 * 14 13 11 40 40 H 1.08002 * 120.08298 * 359.93820 * 16 15 14 41 41 H 1.08004 * 119.69786 * 179.97438 * 17 16 15 42 42 H 1.07994 * 119.67909 * 180.02562 * 18 17 16 43 43 H 1.07999 * 120.09212 * 179.97438 * 19 18 17 44 44 H 0.96992 * 119.99873 * 174.98748 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5028 -0.6523 1.2899 6 6 4.3740 -1.5589 0.7488 7 6 5.6163 -1.1104 1.0117 8 7 5.5067 0.0339 1.7029 9 6 4.2437 0.3145 1.8732 10 7 2.0183 -0.6906 -1.1962 11 6 2.1552 -0.0162 -2.3550 12 8 1.9698 1.1859 -2.3848 13 6 2.5284 -0.7324 -3.5819 14 6 2.8145 -0.1512 -4.7791 15 6 3.1184 -1.1848 -5.6995 16 6 3.4760 -1.1920 -7.0532 17 6 3.7139 -2.3783 -7.6868 18 6 3.6056 -3.5804 -7.0004 19 6 3.2554 -3.5989 -5.6672 20 6 3.0073 -2.4036 -5.0009 21 7 2.6479 -2.1039 -3.7044 22 6 2.4398 -3.0147 -2.7039 23 1 1.5866 -2.9126 -2.0495 24 6 3.3265 -4.0711 -2.5301 25 7 2.9607 -5.1296 -1.8437 26 14 5.0384 -3.9854 -3.2728 27 1 5.0421 -4.6734 -4.5888 28 1 5.4278 -2.5642 -3.4562 29 1 6.0062 -4.6504 -2.3639 30 1 -0.3633 -1.0241 0.0852 31 1 -0.3634 0.5858 0.8444 32 1 -0.3634 0.4383 -0.9295 33 1 1.6289 -0.2428 2.1383 34 1 1.7260 -1.7646 1.2200 35 1 4.1149 -2.4595 0.2121 36 1 6.5391 -1.5907 0.7217 37 1 3.8551 1.1771 2.3941 38 1 2.2431 -1.6332 -1.1542 39 1 2.8071 0.9079 -4.9907 40 1 3.5629 -0.2618 -7.5951 41 1 3.9892 -2.3813 -8.7312 42 1 3.7974 -4.5098 -7.5159 43 1 3.1733 -4.5389 -5.1419 44 1 3.5515 -5.8965 -1.7835 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609164837.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:06 Heat of formation + Delta-G solvation = 79.531852 kcal Electronic energy + Delta-G solvation = -29903.364058 eV Core-core repulsion = 26014.930614 eV Total energy + Delta-G solvation = -3888.433444 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.01370 -42.49517 -40.45500 -37.82787 -37.42640 -35.48276 -34.26329 -33.13792 -32.13500 -30.79282 -30.37706 -29.74637 -27.47734 -26.77249 -25.23102 -22.88385 -22.83354 -22.38696 -21.97464 -21.50129 -20.98317 -20.20009 -18.57138 -18.28902 -17.65667 -17.34160 -16.78195 -16.43186 -16.25629 -15.90326 -15.63506 -15.38970 -15.20386 -15.01670 -14.83540 -14.74786 -14.53579 -14.43038 -14.12022 -13.97896 -13.69915 -13.57847 -13.34708 -13.20325 -13.01522 -12.76934 -12.49929 -12.34962 -12.24902 -11.99730 -11.56259 -11.34147 -11.20593 -11.02045 -10.63049 -10.46289 -10.14008 -9.49222 -9.07816 -8.87440 -8.64809 -6.61482 -0.07048 0.86559 1.08290 1.09882 1.17887 1.31844 1.33832 1.84899 1.98695 2.16901 2.18813 2.26423 2.41716 2.76705 3.11653 3.53823 3.77168 3.81786 3.89952 3.95571 4.01041 4.17046 4.26843 4.28983 4.35291 4.49138 4.53196 4.55204 4.63429 4.71279 4.75480 4.77333 4.89568 5.01060 5.09107 5.21755 5.23298 5.25745 5.33213 5.48553 5.64996 5.67971 5.72037 5.78599 5.95399 6.00953 6.29681 6.35466 6.47118 6.74062 7.08259 7.16812 7.20699 8.16031 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012249 B = 0.004933 C = 0.004262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2285.341061 B = 5674.902695 C = 6568.094227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.119 3.881 3 H 0.082 0.918 4 C 0.099 3.901 5 N -0.452 5.452 6 C -0.050 4.050 7 C -0.059 4.059 8 N -0.532 5.532 9 C 0.185 3.815 10 N -0.716 5.716 11 C 0.594 3.406 12 O -0.577 6.577 13 C -0.039 4.039 14 C -0.165 4.165 15 C -0.146 4.146 16 C -0.077 4.077 17 C -0.151 4.151 18 C -0.113 4.113 19 C -0.139 4.139 20 C 0.044 3.956 21 N -0.290 5.290 22 C -0.378 4.378 23 H 0.110 0.890 24 C 0.078 3.922 25 N -0.841 5.841 26 Si 0.902 3.098 27 H -0.234 1.234 28 H -0.287 1.287 29 H -0.272 1.272 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.041 0.959 33 H 0.157 0.843 34 H 0.104 0.896 35 H 0.163 0.837 36 H 0.166 0.834 37 H 0.243 0.757 38 H 0.415 0.585 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.107 0.893 44 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.475 3.002 2.531 4.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.014 3.986 3 H 0.100 0.900 4 C -0.023 4.023 5 N -0.134 5.134 6 C -0.184 4.184 7 C -0.205 4.205 8 N -0.251 5.251 9 C -0.098 4.098 10 N -0.373 5.373 11 C 0.382 3.618 12 O -0.458 6.458 13 C -0.152 4.152 14 C -0.193 4.193 15 C -0.150 4.150 16 C -0.096 4.096 17 C -0.170 4.170 18 C -0.133 4.133 19 C -0.159 4.159 20 C -0.069 4.069 21 N 0.043 4.957 22 C -0.505 4.505 23 H 0.127 0.873 24 C -0.136 4.136 25 N -0.471 5.471 26 Si 0.726 3.274 27 H -0.157 1.157 28 H -0.213 1.213 29 H -0.198 1.198 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.060 0.940 33 H 0.175 0.825 34 H 0.122 0.878 35 H 0.180 0.820 36 H 0.184 0.816 37 H 0.259 0.741 38 H 0.260 0.740 39 H 0.166 0.834 40 H 0.160 0.840 41 H 0.173 0.827 42 H 0.165 0.835 43 H 0.125 0.875 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.151 3.814 3.363 5.521 hybrid contribution 0.225 -1.271 -0.519 1.391 sum -1.926 2.543 2.843 4.273 Atomic orbital electron populations 1.22072 0.92227 1.03451 1.03309 1.21576 0.96073 0.97351 0.83630 0.89978 1.22545 0.75454 1.04509 0.99780 1.45572 1.07982 1.18871 1.40928 1.22775 0.90780 0.98822 1.05984 1.22401 0.97555 0.95955 1.04612 1.70206 1.19415 1.15791 1.19706 1.25704 0.86165 0.96458 1.01449 1.46736 1.65982 1.15687 1.08936 1.17166 0.75882 0.85782 0.82940 1.90688 1.54137 1.14479 1.86486 1.20583 1.14116 0.83853 0.96678 1.20749 1.08425 0.98678 0.91434 1.18397 1.08999 0.91937 0.95707 1.20635 0.98120 0.99605 0.91216 1.20879 1.03792 0.91252 1.01085 1.21127 1.00062 0.99729 0.92338 1.20314 1.04884 0.94765 0.95968 1.18877 1.06897 0.96144 0.84995 1.40250 1.45961 1.03290 1.06164 1.19048 1.12088 1.06668 1.12679 0.87261 1.25619 0.99870 0.93859 0.94246 1.69633 1.38270 1.03400 1.35792 0.86467 0.80893 0.79314 0.80695 1.15737 1.21262 1.19791 0.91404 0.87621 0.94004 0.82489 0.87805 0.81950 0.81620 0.74141 0.74039 0.83394 0.83971 0.82689 0.83544 0.87506 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.49 71.98 0.68 -2.62 16 2 C 0.12 3.12 2.87 44.99 0.13 3.25 16 3 H 0.08 2.38 7.49 -2.39 -0.02 2.36 16 4 C 0.10 1.98 5.66 86.38 0.49 2.47 16 5 N -0.45 -12.19 2.67 -529.06 -1.41 -13.61 16 6 C -0.05 -1.66 11.11 83.09 0.92 -0.74 16 7 C -0.06 -2.05 11.87 83.52 0.99 -1.06 16 8 N -0.53 -18.14 11.25 -200.31 -2.25 -20.40 16 9 C 0.18 4.93 12.56 180.26 2.26 7.20 16 10 N -0.72 -26.05 4.48 -446.31 -2.00 -28.05 16 11 C 0.59 25.93 7.74 86.51 0.67 26.60 16 12 O -0.58 -26.62 16.47 -4.23 -0.07 -26.69 16 13 C -0.04 -1.80 6.77 39.91 0.27 -1.53 16 14 C -0.17 -7.32 10.55 22.63 0.24 -7.08 16 15 C -0.15 -6.22 6.16 -21.34 -0.13 -6.35 16 16 C -0.08 -2.63 10.06 22.31 0.22 -2.41 16 17 C -0.15 -4.57 9.97 22.03 0.22 -4.35 16 18 C -0.11 -3.78 10.02 22.32 0.22 -3.55 16 19 C -0.14 -5.81 6.86 22.38 0.15 -5.66 16 20 C 0.04 2.02 5.16 39.06 0.20 2.22 16 21 N -0.29 -13.82 2.38 -331.34 -0.79 -14.61 16 22 C -0.38 -17.98 8.03 84.09 0.68 -17.31 16 23 H 0.11 5.29 6.73 -2.91 -0.02 5.28 16 24 C 0.08 3.65 4.93 84.95 0.42 4.07 16 25 N -0.84 -39.41 13.95 21.67 0.30 -39.11 16 26 Si 0.90 39.74 24.37 68.60 1.67 41.41 16 27 H -0.23 -9.72 5.70 99.48 0.57 -9.15 16 28 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 29 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.16 1.61 8.14 -2.38 -0.02 1.60 16 34 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.16 5.79 8.06 -2.91 -0.02 5.77 16 36 H 0.17 5.42 8.06 -2.91 -0.02 5.40 16 37 H 0.24 4.01 8.06 -2.91 -0.02 3.99 16 38 H 0.41 16.02 4.55 -92.71 -0.42 15.59 16 39 H 0.15 6.00 8.06 -2.91 -0.02 5.98 16 40 H 0.14 3.90 8.06 -2.91 -0.02 3.88 16 41 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 42 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 43 H 0.11 4.60 6.00 -2.91 -0.02 4.58 16 44 H 0.30 12.87 8.31 -92.71 -0.77 12.10 16 Total: -1.00 -66.28 365.48 4.56 -61.71 By element: Atomic # 1 Polarization: 45.73 SS G_CDS: 0.47 Total: 46.20 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 8.64 Total: -6.86 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -6.15 Total: -115.78 kcal Atomic # 8 Polarization: -26.62 SS G_CDS: -0.07 Total: -26.69 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.67 Total: 41.41 kcal Total: -66.28 4.56 -61.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609164837.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.243 kcal (2) G-P(sol) polarization free energy of solvation -66.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds