Wall clock time and date at job start Tue Mar 31 2020 21:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.46847 * 2 1 4 4 C 1.48560 * 110.99748 * 283.24475 * 3 2 1 5 5 C 1.54385 * 104.59339 * 200.96364 * 4 3 2 6 6 C 1.54264 * 105.06117 * 23.84973 * 5 4 3 7 7 C 1.48565 * 110.99760 * 167.82551 * 3 2 1 8 8 H 1.09002 * 110.51109 * 40.20855 * 7 3 2 9 9 C 1.52995 * 110.41167 * 277.81695 * 7 3 2 10 10 N 1.46504 * 109.47077 * 180.56123 * 9 7 3 11 11 S 1.65596 * 119.99859 * 165.49560 * 10 9 7 12 12 O 1.42098 * 106.40739 * 311.46085 * 11 10 9 13 13 O 1.42103 * 106.40131 * 178.54094 * 11 10 9 14 14 C 1.76199 * 107.21678 * 65.00259 * 11 10 9 15 15 C 1.38661 * 119.87891 * 270.01984 * 14 11 10 16 16 C 1.38613 * 120.50478 * 179.97438 * 15 14 11 17 17 C 1.37644 * 120.24702 * 359.76233 * 16 15 14 18 18 C 1.40698 * 119.74125 * 0.49026 * 17 16 15 19 19 C 1.41402 * 120.24189 * 179.75961 * 18 17 16 20 20 H 1.07996 * 119.99747 * 154.00317 * 19 18 17 21 21 C 1.39945 * 120.00061 * 334.01289 * 19 18 17 22 22 N 1.30827 * 119.99740 * 329.54685 * 21 19 18 23 23 Si 1.86793 * 120.00069 * 149.54706 * 21 19 18 24 24 H 1.48508 * 109.46965 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47534 * 299.99533 * 23 21 19 26 26 H 1.48496 * 109.47137 * 59.99942 * 23 21 19 27 27 C 1.37602 * 119.87644 * 89.99913 * 14 11 10 28 28 H 1.09000 * 109.47175 * 300.00071 * 1 2 3 29 29 H 1.09000 * 109.47338 * 60.00404 * 1 2 3 30 30 H 1.08998 * 109.47001 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47175 * 239.99929 * 2 1 3 32 32 H 1.09005 * 109.46878 * 119.99664 * 2 1 3 33 33 H 1.08992 * 110.41341 * 82.18577 * 4 3 2 34 34 H 1.09002 * 110.51453 * 319.78822 * 4 3 2 35 35 H 1.09002 * 110.32366 * 264.95964 * 5 4 3 36 36 H 1.08993 * 110.32592 * 142.74965 * 5 4 3 37 37 H 1.09000 * 110.32899 * 241.10668 * 6 5 4 38 38 H 1.08997 * 110.32412 * 118.89535 * 6 5 4 39 39 H 1.09005 * 109.47163 * 60.56292 * 9 7 3 40 40 H 1.09000 * 109.47359 * 300.56102 * 9 7 3 41 41 H 0.97000 * 119.99809 * 345.49902 * 10 9 7 42 42 H 1.08000 * 119.74455 * 359.97438 * 15 14 11 43 43 H 1.07996 * 119.87390 * 180.02562 * 16 15 14 44 44 H 1.08000 * 120.12740 * 180.27282 * 17 16 15 45 45 H 0.96997 * 120.00149 * 353.22689 * 22 21 19 46 46 H 1.07998 * 120.12766 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8975 1.9928 -1.3501 5 6 2.8981 3.1684 -1.3394 6 6 3.9361 2.8015 -0.2588 7 6 3.4754 1.4351 0.2925 8 1 3.9955 0.6243 -0.2176 9 6 3.7195 1.3584 1.8009 10 7 5.1588 1.4229 2.0666 11 16 5.7049 1.7219 3.6010 12 8 4.9759 2.8459 4.0746 13 8 7.1240 1.6874 3.5357 14 6 5.2196 0.3561 4.6028 15 6 3.9958 0.3777 5.2544 16 6 3.6008 -0.6899 6.0452 17 6 4.4195 -1.7872 6.1881 18 6 5.6658 -1.8178 5.5359 19 6 6.5174 -2.9374 5.6795 20 1 7.2342 -3.1732 4.9068 21 6 6.4313 -3.7401 6.8226 22 7 6.0673 -3.2154 7.9644 23 14 6.8359 -5.5607 6.7181 24 1 6.6690 -6.1825 8.0564 25 1 5.9208 -6.2165 5.7496 26 1 8.2399 -5.7306 6.2655 27 6 6.0563 -0.7283 4.7353 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 0.8835 2.3582 -1.5121 34 1 2.1680 1.2704 -2.1201 35 1 2.3897 4.0960 -1.0764 36 1 3.3813 3.2632 -2.3118 37 1 3.9372 3.5489 0.5346 38 1 4.9288 2.7161 -0.7008 39 1 3.3205 0.4201 2.1864 40 1 3.2215 2.1942 2.2925 41 1 5.7918 1.2904 1.3436 42 1 3.3455 1.2330 5.1448 43 1 2.6453 -0.6625 6.5478 44 1 4.1079 -2.6199 6.8013 45 1 5.9525 -2.2554 8.0423 46 1 7.0091 -0.7431 4.2270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619473229.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:34 Heat of formation + Delta-G solvation = -68.191010 kcal Electronic energy + Delta-G solvation = -27505.722731 eV Core-core repulsion = 23714.034744 eV Total energy + Delta-G solvation = -3791.687988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.54554 -37.84081 -36.72341 -35.36785 -35.13492 -34.06884 -33.46144 -30.06949 -29.75926 -29.74354 -28.83170 -25.28978 -24.92038 -22.97325 -21.97104 -21.20717 -20.87505 -20.49986 -19.15551 -18.34304 -17.16102 -16.53936 -16.13914 -16.00071 -15.37091 -14.96451 -14.87667 -14.55276 -14.37267 -14.15560 -13.94323 -13.72007 -13.44952 -13.08959 -12.71921 -12.63103 -12.49284 -12.17984 -11.96459 -11.69175 -11.61270 -11.58501 -11.52348 -11.48507 -11.35308 -11.27334 -11.12210 -11.07030 -10.97589 -10.71975 -10.66969 -10.49240 -9.84540 -9.74875 -9.25330 -9.06777 -8.74824 -8.25157 -7.90196 -7.38498 -4.61484 0.94564 2.03695 2.58301 3.07510 3.13480 3.28217 3.37469 3.83220 3.90842 4.16208 4.32465 4.36594 4.45528 4.72557 4.86064 4.94257 4.98173 5.06601 5.15485 5.19538 5.24584 5.35412 5.39183 5.49678 5.61116 5.66270 5.73029 5.74292 5.84070 5.89082 5.91368 5.99010 6.05424 6.09816 6.11459 6.45593 6.56008 6.64118 6.73661 6.82282 7.02732 7.14107 7.26158 7.46901 7.54995 7.62510 7.89408 8.02021 8.51383 8.65477 9.85740 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.003216 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.906987 B = 8705.257844 C = 9710.048933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.035 3.965 3 N -0.504 5.504 4 C 0.034 3.966 5 C -0.125 4.125 6 C -0.122 4.122 7 C 0.057 3.943 8 H 0.060 0.940 9 C 0.135 3.865 10 N -1.120 6.120 11 S 2.692 3.308 12 O -0.971 6.971 13 O -0.972 6.972 14 C -0.620 4.620 15 C -0.166 4.166 16 C -0.098 4.098 17 C -0.177 4.177 18 C 0.080 3.920 19 C -0.525 4.525 20 H 0.081 0.919 21 C 0.043 3.957 22 N -0.784 5.784 23 Si 1.063 2.937 24 H -0.273 1.273 25 H -0.273 1.273 26 H -0.274 1.274 27 C -0.125 4.125 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.088 0.912 41 H 0.412 0.588 42 H 0.108 0.892 43 H 0.099 0.901 44 H 0.108 0.892 45 H 0.299 0.701 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.570 5.472 -16.098 18.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.093 4.093 3 N -0.229 5.229 4 C -0.094 4.094 5 C -0.163 4.163 6 C -0.161 4.161 7 C -0.052 4.052 8 H 0.078 0.922 9 C 0.008 3.992 10 N -0.879 5.879 11 S 2.787 3.213 12 O -0.961 6.961 13 O -0.962 6.962 14 C -0.712 4.712 15 C -0.187 4.187 16 C -0.118 4.118 17 C -0.196 4.196 18 C 0.076 3.924 19 C -0.552 4.552 20 H 0.099 0.901 21 C -0.181 4.181 22 N -0.406 5.406 23 Si 0.886 3.114 24 H -0.197 1.197 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.146 4.146 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.245 0.755 42 H 0.126 0.874 43 H 0.118 0.882 44 H 0.126 0.874 45 H 0.112 0.888 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.554 5.173 -14.356 17.026 hybrid contribution 0.324 0.109 -1.596 1.632 sum -7.229 5.282 -15.951 18.292 Atomic orbital electron populations 1.21710 0.94539 1.01505 1.02413 1.22333 0.96657 0.88974 1.01374 1.65240 1.14258 1.17796 1.25588 1.23122 1.00303 0.96187 0.89752 1.22307 0.96545 0.98624 0.98837 1.22385 0.98446 0.96537 0.98695 1.22782 0.89030 0.97871 0.95562 0.92234 1.21079 0.79805 1.02977 0.95359 1.55523 1.13823 1.91040 1.27489 1.01624 0.72818 0.74537 0.72343 1.93518 1.73887 1.48985 1.79733 1.93546 1.28832 1.87707 1.86112 1.29834 1.05375 1.17791 1.18163 1.20026 0.95762 0.99550 1.03347 1.20721 0.98375 0.94331 0.98326 1.21377 0.94652 0.98369 1.05249 1.17707 0.91905 0.91504 0.91303 1.20565 1.18954 1.09163 1.06555 0.90117 1.27081 0.92023 1.07572 0.91396 1.70471 1.27135 1.17551 1.25439 0.83669 0.77755 0.72641 0.77336 1.19749 1.19860 1.19912 1.20741 0.97527 0.92290 1.04071 0.91649 0.93019 0.92336 0.94536 0.90214 0.90038 0.93878 0.90861 0.91442 0.90159 0.91161 0.91420 0.89405 0.75466 0.87372 0.88246 0.87362 0.88846 0.87007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 10.05 37.16 0.37 -0.86 16 2 C 0.03 0.34 5.51 -3.82 -0.02 0.32 16 3 N -0.50 -5.18 5.00 -222.13 -1.11 -6.29 16 4 C 0.03 0.29 5.99 -2.18 -0.01 0.28 16 5 C -0.13 -1.00 7.00 -25.34 -0.18 -1.18 16 6 C -0.12 -1.16 6.30 -25.35 -0.16 -1.32 16 7 C 0.06 0.61 2.35 -66.07 -0.16 0.45 16 8 H 0.06 0.60 8.00 -51.93 -0.42 0.19 16 9 C 0.13 1.74 5.75 -4.04 -0.02 1.72 16 10 N -1.12 -15.51 5.75 -10.61 -0.06 -15.57 16 11 S 2.69 49.74 5.73 -107.50 -0.62 49.12 16 12 O -0.97 -19.66 16.75 -57.17 -0.96 -20.62 16 13 O -0.97 -20.30 17.27 -57.17 -0.99 -21.29 16 14 C -0.62 -13.37 5.94 -39.66 -0.24 -13.61 16 15 C -0.17 -3.54 9.53 -39.29 -0.37 -3.92 16 16 C -0.10 -2.16 10.02 -39.66 -0.40 -2.56 16 17 C -0.18 -4.31 8.17 -38.87 -0.32 -4.62 16 18 C 0.08 2.03 5.25 -106.82 -0.56 1.47 16 19 C -0.53 -13.45 8.93 -37.74 -0.34 -13.79 16 20 H 0.08 2.01 8.00 -52.49 -0.42 1.59 16 21 C 0.04 1.04 4.79 -17.34 -0.08 0.96 16 22 N -0.78 -20.14 12.39 55.55 0.69 -19.45 16 23 Si 1.06 20.68 30.03 -169.99 -5.10 15.57 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.27 -5.12 7.11 56.52 0.40 -4.71 16 26 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 27 C -0.13 -2.99 9.26 -38.87 -0.36 -3.35 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.40 7.58 -51.93 -0.39 0.01 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.33 7.72 -51.93 -0.40 -0.07 16 32 H 0.08 0.85 7.13 -51.93 -0.37 0.48 16 33 H 0.08 0.64 7.90 -51.93 -0.41 0.22 16 34 H 0.04 0.34 7.72 -51.93 -0.40 -0.06 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.85 7.83 -51.93 -0.41 0.44 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.91 7.28 -51.93 -0.38 0.53 16 40 H 0.09 1.21 7.72 -51.93 -0.40 0.81 16 41 H 0.41 4.70 8.64 -34.47 -0.30 4.41 16 42 H 0.11 2.10 7.60 -52.49 -0.40 1.70 16 43 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 44 H 0.11 2.68 6.75 -52.49 -0.35 2.33 16 45 H 0.30 7.90 7.20 -40.82 -0.29 7.61 16 46 H 0.11 2.59 7.60 -52.49 -0.40 2.19 16 LS Contribution 382.53 15.07 5.76 5.76 Total: -1.00 -30.33 382.53 -12.30 -42.63 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -7.07 Total: 10.15 kcal Atomic # 6 Polarization: -37.17 SS G_CDS: -2.84 Total: -40.01 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: -0.48 Total: -41.31 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -1.94 Total: -41.91 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.10 Total: 15.57 kcal Atomic # 16 Polarization: 49.74 SS G_CDS: -0.62 Total: 49.12 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.33 -12.30 -42.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619473229.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.565 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds