Wall clock time and date at job start Tue Mar 31 2020 21:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46900 * 109.46847 * 2 1 4 4 C 1.48560 * 110.99748 * 283.24475 * 3 2 1 5 5 C 1.54385 * 104.59339 * 200.96364 * 4 3 2 6 6 C 1.54264 * 105.06117 * 23.84973 * 5 4 3 7 7 C 1.48565 * 110.99760 * 167.82551 * 3 2 1 8 8 H 1.09002 * 110.51109 * 40.20855 * 7 3 2 9 9 C 1.52995 * 110.41167 * 277.81695 * 7 3 2 10 10 N 1.46504 * 109.47077 * 180.56123 * 9 7 3 11 11 S 1.65596 * 119.99859 * 165.49560 * 10 9 7 12 12 O 1.42098 * 106.40739 * 311.46085 * 11 10 9 13 13 O 1.42103 * 106.40131 * 178.54094 * 11 10 9 14 14 C 1.76199 * 107.21678 * 65.00259 * 11 10 9 15 15 C 1.38661 * 119.87891 * 270.01984 * 14 11 10 16 16 C 1.38613 * 120.50478 * 179.97438 * 15 14 11 17 17 C 1.37644 * 120.24702 * 359.76233 * 16 15 14 18 18 C 1.40698 * 119.74125 * 0.49026 * 17 16 15 19 19 C 1.41402 * 120.24189 * 179.75961 * 18 17 16 20 20 H 1.07996 * 119.99747 * 154.00317 * 19 18 17 21 21 C 1.39945 * 120.00061 * 334.01289 * 19 18 17 22 22 N 1.30827 * 119.99740 * 329.54685 * 21 19 18 23 23 Si 1.86793 * 120.00069 * 149.54706 * 21 19 18 24 24 H 1.48508 * 109.46965 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47534 * 299.99533 * 23 21 19 26 26 H 1.48496 * 109.47137 * 59.99942 * 23 21 19 27 27 C 1.37602 * 119.87644 * 89.99913 * 14 11 10 28 28 H 1.09000 * 109.47175 * 300.00071 * 1 2 3 29 29 H 1.09000 * 109.47338 * 60.00404 * 1 2 3 30 30 H 1.08998 * 109.47001 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47175 * 239.99929 * 2 1 3 32 32 H 1.09005 * 109.46878 * 119.99664 * 2 1 3 33 33 H 1.08992 * 110.41341 * 82.18577 * 4 3 2 34 34 H 1.09002 * 110.51453 * 319.78822 * 4 3 2 35 35 H 1.09002 * 110.32366 * 264.95964 * 5 4 3 36 36 H 1.08993 * 110.32592 * 142.74965 * 5 4 3 37 37 H 1.09000 * 110.32899 * 241.10668 * 6 5 4 38 38 H 1.08997 * 110.32412 * 118.89535 * 6 5 4 39 39 H 1.09005 * 109.47163 * 60.56292 * 9 7 3 40 40 H 1.09000 * 109.47359 * 300.56102 * 9 7 3 41 41 H 0.97000 * 119.99809 * 345.49902 * 10 9 7 42 42 H 1.08000 * 119.74455 * 359.97438 * 15 14 11 43 43 H 1.07996 * 119.87390 * 180.02562 * 16 15 14 44 44 H 1.08000 * 120.12740 * 180.27282 * 17 16 15 45 45 H 0.96997 * 120.00149 * 353.22689 * 22 21 19 46 46 H 1.07998 * 120.12766 * 0.02562 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8975 1.9928 -1.3501 5 6 2.8981 3.1684 -1.3394 6 6 3.9361 2.8015 -0.2588 7 6 3.4754 1.4351 0.2925 8 1 3.9955 0.6243 -0.2176 9 6 3.7195 1.3584 1.8009 10 7 5.1588 1.4229 2.0666 11 16 5.7049 1.7219 3.6010 12 8 4.9759 2.8459 4.0746 13 8 7.1240 1.6874 3.5357 14 6 5.2196 0.3561 4.6028 15 6 3.9958 0.3777 5.2544 16 6 3.6008 -0.6899 6.0452 17 6 4.4195 -1.7872 6.1881 18 6 5.6658 -1.8178 5.5359 19 6 6.5174 -2.9374 5.6795 20 1 7.2342 -3.1732 4.9068 21 6 6.4313 -3.7401 6.8226 22 7 6.0673 -3.2154 7.9644 23 14 6.8359 -5.5607 6.7181 24 1 6.6690 -6.1825 8.0564 25 1 5.9208 -6.2165 5.7496 26 1 8.2399 -5.7306 6.2655 27 6 6.0563 -0.7283 4.7353 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 0.8835 2.3582 -1.5121 34 1 2.1680 1.2704 -2.1201 35 1 2.3897 4.0960 -1.0764 36 1 3.3813 3.2632 -2.3118 37 1 3.9372 3.5489 0.5346 38 1 4.9288 2.7161 -0.7008 39 1 3.3205 0.4201 2.1864 40 1 3.2215 2.1942 2.2925 41 1 5.7918 1.2904 1.3436 42 1 3.3455 1.2330 5.1448 43 1 2.6453 -0.6625 6.5478 44 1 4.1079 -2.6199 6.8013 45 1 5.9525 -2.2554 8.0423 46 1 7.0091 -0.7431 4.2270 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619473229.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:33 Heat of formation + Delta-G solvation = -88.636091 kcal Electronic energy + Delta-G solvation = -27506.609297 eV Core-core repulsion = 23714.034744 eV Total energy + Delta-G solvation = -3792.574553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.32277 -39.67150 -38.33671 -36.98507 -36.25022 -35.90824 -34.18926 -31.89792 -31.58184 -30.61684 -29.57056 -27.16220 -25.87374 -23.79410 -23.65916 -23.02554 -21.62168 -21.34239 -20.71885 -19.98429 -18.58498 -18.03613 -17.40920 -16.95521 -16.74653 -16.51197 -16.08007 -15.81667 -15.64964 -15.39233 -15.23892 -15.12389 -14.62686 -14.44097 -14.00578 -13.78254 -13.60759 -13.49473 -13.35109 -13.23756 -13.16194 -13.09688 -12.99059 -12.76853 -12.42681 -12.38183 -12.21090 -12.15182 -11.99597 -11.98704 -11.69987 -11.54438 -11.52370 -11.35548 -10.92683 -10.47639 -10.07404 -9.78503 -9.49520 -9.30344 -6.56909 -0.58640 0.22857 0.75191 1.48987 1.56626 1.78377 2.01511 2.28814 2.45699 2.69870 2.98583 3.30732 3.41282 3.62381 3.65313 3.97679 4.15466 4.17005 4.22021 4.26629 4.34810 4.41663 4.45729 4.53951 4.56516 4.64315 4.70796 4.74744 4.77155 4.91748 4.95643 4.98708 5.00444 5.07559 5.11429 5.18243 5.22632 5.31257 5.38898 5.41862 5.55847 5.67901 5.70585 5.89208 6.00709 6.05219 6.09296 6.14933 6.62141 6.76715 7.90843 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.003216 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.906987 B = 8705.257844 C = 9710.048933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.033 3.967 3 N -0.517 5.517 4 C 0.034 3.966 5 C -0.121 4.121 6 C -0.126 4.126 7 C 0.060 3.940 8 H 0.067 0.933 9 C 0.131 3.869 10 N -1.101 6.101 11 S 2.723 3.277 12 O -0.983 6.983 13 O -0.994 6.994 14 C -0.627 4.627 15 C -0.160 4.160 16 C -0.100 4.100 17 C -0.191 4.191 18 C 0.054 3.946 19 C -0.561 4.561 20 H 0.077 0.923 21 C 0.010 3.990 22 N -0.805 5.805 23 Si 1.114 2.886 24 H -0.271 1.271 25 H -0.261 1.261 26 H -0.258 1.258 27 C -0.146 4.146 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.426 0.574 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.097 0.903 45 H 0.282 0.718 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.454 5.849 -18.110 20.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.095 4.095 3 N -0.242 5.242 4 C -0.093 4.093 5 C -0.159 4.159 6 C -0.164 4.164 7 C -0.050 4.050 8 H 0.085 0.915 9 C 0.005 3.995 10 N -0.864 5.864 11 S 2.815 3.185 12 O -0.973 6.973 13 O -0.984 6.984 14 C -0.715 4.715 15 C -0.180 4.180 16 C -0.119 4.119 17 C -0.211 4.211 18 C 0.051 3.949 19 C -0.588 4.588 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.427 5.427 23 Si 0.931 3.069 24 H -0.195 1.195 25 H -0.185 1.185 26 H -0.182 1.182 27 C -0.167 4.167 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.263 0.737 42 H 0.151 0.849 43 H 0.148 0.852 44 H 0.115 0.885 45 H 0.093 0.907 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -8.443 5.548 -16.364 19.232 hybrid contribution 0.495 0.175 -1.071 1.193 sum -7.948 5.723 -17.436 19.998 Atomic orbital electron populations 1.21674 0.93756 1.01992 1.02320 1.22348 0.97319 0.88803 1.01031 1.65227 1.13816 1.18136 1.27053 1.23182 1.00921 0.96360 0.88850 1.22310 0.96049 0.98405 0.99142 1.22426 0.99697 0.95375 0.98893 1.22725 0.89727 0.98931 0.93610 0.91515 1.21200 0.78528 1.02373 0.97449 1.55076 1.14848 1.90481 1.25952 1.00715 0.71864 0.73261 0.72690 1.93502 1.74109 1.48957 1.80727 1.93512 1.30496 1.87695 1.86713 1.30356 1.04911 1.18010 1.18256 1.20435 0.95817 0.99859 1.01916 1.21078 0.99230 0.93567 0.98051 1.21397 0.94973 0.99127 1.05613 1.18038 0.92572 0.92185 0.92112 1.20773 1.20088 1.10649 1.07331 0.90472 1.28469 0.90645 1.11196 0.90437 1.70594 1.29515 1.16404 1.26152 0.83049 0.78621 0.67621 0.77630 1.19515 1.18544 1.18190 1.20814 0.98171 0.92960 1.04720 0.92697 0.92090 0.91604 0.93777 0.91644 0.89342 0.93073 0.90800 0.89746 0.91396 0.89832 0.92058 0.90013 0.73675 0.84896 0.85208 0.88493 0.90653 0.87196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 10.05 71.98 0.72 -1.45 16 2 C 0.03 0.59 5.51 86.31 0.48 1.07 16 3 N -0.52 -9.64 5.00 -856.69 -4.29 -13.93 16 4 C 0.03 0.49 5.99 86.45 0.52 1.01 16 5 C -0.12 -1.61 7.00 31.49 0.22 -1.39 16 6 C -0.13 -2.09 6.30 31.49 0.20 -1.89 16 7 C 0.06 1.16 2.35 45.06 0.11 1.26 16 8 H 0.07 1.20 8.00 -2.39 -0.02 1.18 16 9 C 0.13 3.20 5.75 86.38 0.50 3.69 16 10 N -1.10 -28.83 5.75 -187.48 -1.08 -29.90 16 11 S 2.72 97.90 5.73 -56.49 -0.32 97.57 16 12 O -0.98 -38.29 16.75 -128.00 -2.14 -40.43 16 13 O -0.99 -40.91 17.27 -128.00 -2.21 -43.12 16 14 C -0.63 -26.84 5.94 22.22 0.13 -26.71 16 15 C -0.16 -6.65 9.53 22.46 0.21 -6.44 16 16 C -0.10 -4.35 10.02 22.22 0.22 -4.13 16 17 C -0.19 -9.53 8.17 22.73 0.19 -9.34 16 18 C 0.05 2.86 5.25 -21.29 -0.11 2.75 16 19 C -0.56 -29.72 8.93 23.46 0.21 -29.51 16 20 H 0.08 3.99 8.00 -2.91 -0.02 3.96 16 21 C 0.01 0.51 4.79 85.26 0.41 0.92 16 22 N -0.81 -42.61 12.39 21.83 0.27 -42.34 16 23 Si 1.11 41.78 30.03 68.60 2.06 43.84 16 24 H -0.27 -9.96 7.11 99.48 0.71 -9.26 16 25 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 26 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 27 C -0.15 -7.11 9.26 22.73 0.21 -6.90 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.83 7.58 -2.39 -0.02 0.81 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 31 H 0.04 0.71 7.72 -2.39 -0.02 0.70 16 32 H 0.07 1.34 7.13 -2.38 -0.02 1.32 16 33 H 0.09 1.14 7.90 -2.39 -0.02 1.13 16 34 H 0.05 0.66 7.72 -2.39 -0.02 0.64 16 35 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 1.31 7.83 -2.39 -0.02 1.29 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.59 7.28 -2.38 -0.02 1.57 16 40 H 0.08 2.13 7.72 -2.39 -0.02 2.11 16 41 H 0.43 8.93 8.64 -96.75 -0.84 8.09 16 42 H 0.13 4.86 7.60 -2.91 -0.02 4.84 16 43 H 0.13 4.75 8.06 -2.91 -0.02 4.73 16 44 H 0.10 4.97 6.75 -2.91 -0.02 4.95 16 45 H 0.28 15.60 7.20 -92.71 -0.67 14.94 16 46 H 0.11 5.25 7.60 -2.91 -0.02 5.23 16 Total: -1.00 -65.83 382.53 -3.26 -69.08 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: 0.24 Total: 36.30 kcal Atomic # 6 Polarization: -81.28 SS G_CDS: 4.21 Total: -77.07 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -5.09 Total: -86.17 kcal Atomic # 8 Polarization: -79.20 SS G_CDS: -4.35 Total: -83.55 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.06 Total: 43.84 kcal Atomic # 16 Polarization: 97.90 SS G_CDS: -0.32 Total: 97.57 kcal Total: -65.83 -3.26 -69.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619473229.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.554 kcal (2) G-P(sol) polarization free energy of solvation -65.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds