Wall clock time and date at job start Tue Mar 31 2020 21:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.47276 * 2 1 4 4 C 1.47443 * 110.99813 * 54.99907 * 3 2 1 5 5 C 1.54319 * 107.23879 * 123.25575 * 4 3 2 6 6 C 1.55138 * 103.01397 * 22.28333 * 5 4 3 7 7 C 1.47847 * 110.99905 * 175.83715 * 3 2 1 8 8 H 1.08993 * 110.37520 * 332.58006 * 7 3 2 9 9 C 1.53003 * 110.37073 * 94.81189 * 7 3 2 10 10 N 1.46494 * 109.46977 * 298.40245 * 9 7 3 11 11 S 1.65599 * 120.00131 * 161.58088 * 10 9 7 12 12 O 1.42101 * 106.40511 * 178.81144 * 11 10 9 13 13 O 1.42106 * 106.40230 * 311.73402 * 11 10 9 14 14 C 1.76199 * 107.21884 * 65.27186 * 11 10 9 15 15 C 1.38658 * 119.87632 * 90.00037 * 14 11 10 16 16 C 1.38618 * 120.50248 * 179.97438 * 15 14 11 17 17 C 1.37634 * 120.24739 * 0.02862 * 16 15 14 18 18 C 1.40700 * 119.74784 * 359.97029 * 17 16 15 19 19 C 1.41397 * 120.24607 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99763 * 150.72650 * 19 18 17 21 21 C 1.39942 * 120.00102 * 330.73070 * 19 18 17 22 22 N 1.30824 * 119.99977 * 342.53631 * 21 19 18 23 23 Si 1.86796 * 120.00060 * 162.53592 * 21 19 18 24 24 H 1.48504 * 109.47236 * 90.00171 * 23 21 19 25 25 H 1.48504 * 109.47264 * 209.99755 * 23 21 19 26 26 H 1.48500 * 109.47108 * 330.00069 * 23 21 19 27 27 C 1.37601 * 119.87804 * 269.72991 * 14 11 10 28 28 H 1.08993 * 109.47182 * 298.41385 * 1 2 3 29 29 H 1.09006 * 109.46713 * 58.40955 * 1 2 3 30 30 H 1.08998 * 109.46627 * 178.40997 * 1 2 3 31 31 H 1.09001 * 109.47583 * 240.00373 * 2 1 3 32 32 H 1.09002 * 109.47234 * 120.00228 * 2 1 3 33 33 H 1.08998 * 109.89116 * 242.66438 * 4 3 2 34 34 H 1.09008 * 109.89063 * 3.68760 * 4 3 2 35 35 H 1.08999 * 110.70721 * 140.66200 * 5 4 3 36 36 H 1.08997 * 110.70515 * 263.73032 * 5 4 3 37 37 H 1.09004 * 110.99253 * 206.25516 * 6 5 4 38 38 H 1.09006 * 110.99262 * 82.44133 * 6 5 4 39 39 H 1.09000 * 109.47059 * 178.39960 * 9 7 3 40 40 H 1.09000 * 109.46973 * 58.39998 * 9 7 3 41 41 H 0.97005 * 120.00051 * 341.85113 * 10 9 7 42 42 H 1.08005 * 119.74678 * 0.02562 * 15 14 11 43 43 H 1.08001 * 119.87446 * 180.02562 * 16 15 14 44 44 H 1.07999 * 120.12807 * 180.02562 * 17 16 15 45 45 H 0.96999 * 120.00207 * 179.97438 * 22 21 19 46 46 H 1.07998 * 120.12581 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4515 2.1463 1.1276 5 6 2.6352 2.7019 1.9470 6 6 3.7998 2.7026 0.9221 7 6 3.4942 1.4256 0.1002 8 1 3.8639 0.5410 0.6188 9 6 4.1201 1.5258 -1.2924 10 7 3.7589 0.3423 -2.0764 11 16 3.8934 0.3696 -3.7267 12 8 3.5006 -0.9176 -4.1828 13 8 3.2708 1.5712 -4.1602 14 6 5.6061 0.5312 -4.1078 15 6 6.3880 -0.6026 -4.2680 16 6 7.7366 -0.4906 -4.5685 17 6 8.3145 0.7504 -4.7106 18 6 7.5308 1.9079 -4.5503 19 6 8.1136 3.1881 -4.6944 20 1 7.5150 4.0181 -5.0398 21 6 9.4659 3.3797 -4.3896 22 7 10.1037 2.4987 -3.6626 23 14 10.3602 4.8934 -5.0207 24 1 10.2371 5.9910 -4.0280 25 1 11.7951 4.5708 -5.2264 26 1 9.7595 5.3219 -6.3094 27 6 6.1615 1.7820 -4.2509 28 1 -0.3633 0.4890 0.9038 29 1 -0.3633 0.5384 -0.8754 30 1 -0.3632 -1.0273 -0.0285 31 1 1.8935 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.8431 2.9684 0.7508 34 1 0.8429 1.4895 1.7493 35 1 2.4242 3.7144 2.2912 36 1 2.8606 2.0488 2.7900 37 1 4.7632 2.6216 1.4256 38 1 3.7643 3.5909 0.2912 39 1 5.2047 1.5834 -1.1999 40 1 3.7502 2.4204 -1.7934 41 1 3.4371 -0.4561 -1.6292 42 1 5.9427 -1.5805 -4.1587 43 1 8.3360 -1.3805 -4.6915 44 1 9.3652 0.8354 -4.9451 45 1 11.0411 2.6313 -3.4516 46 1 5.5496 2.6637 -4.1304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619473230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:37 Heat of formation + Delta-G solvation = -56.611501 kcal Electronic energy + Delta-G solvation = -27776.813918 eV Core-core repulsion = 23985.628055 eV Total energy + Delta-G solvation = -3791.185863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.56474 -37.63026 -36.58237 -35.21516 -34.80143 -33.79463 -33.55786 -30.05872 -29.81066 -29.65289 -28.67914 -25.45724 -25.07482 -22.79958 -21.88518 -21.03665 -20.83381 -20.21082 -18.93871 -17.87122 -17.05767 -16.71939 -16.00728 -15.82582 -15.41222 -15.14538 -14.74074 -14.57139 -14.30642 -14.06197 -13.48361 -13.38005 -13.31718 -13.27121 -12.57631 -12.54175 -12.14078 -12.12246 -11.89902 -11.73419 -11.56901 -11.45978 -11.34479 -11.29437 -11.28999 -11.28931 -11.01549 -10.99206 -10.89183 -10.82993 -10.75215 -10.61351 -9.75895 -9.62325 -9.33425 -9.02852 -8.37795 -8.03826 -7.65672 -6.91096 -4.52386 1.10872 2.20480 2.64543 3.01470 3.02933 3.09616 3.63047 3.79163 3.85192 4.30687 4.46154 4.47010 4.53064 4.79733 4.90627 5.04804 5.07675 5.11090 5.24745 5.32804 5.34191 5.38514 5.47371 5.64437 5.67204 5.69231 5.83202 5.86253 5.89620 5.97511 6.04545 6.06800 6.12042 6.18461 6.26910 6.65580 6.73389 6.85704 6.88706 7.00591 7.04579 7.21498 7.30303 7.39217 7.70866 7.82184 7.93942 8.40888 8.68236 8.73326 10.06654 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.003549 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.079821 B = 7888.137613 C = 9268.420813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.042 3.958 3 N -0.520 5.520 4 C 0.039 3.961 5 C -0.142 4.142 6 C -0.124 4.124 7 C 0.066 3.934 8 H 0.062 0.938 9 C 0.135 3.865 10 N -1.116 6.116 11 S 2.690 3.310 12 O -0.980 6.980 13 O -0.968 6.968 14 C -0.634 4.634 15 C -0.144 4.144 16 C -0.122 4.122 17 C -0.114 4.114 18 C 0.095 3.905 19 C -0.466 4.466 20 H 0.083 0.917 21 C 0.077 3.923 22 N -0.798 5.798 23 Si 0.909 3.091 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.259 1.259 27 C -0.122 4.122 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.032 0.968 33 H 0.077 0.923 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.407 0.593 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.118 0.882 45 H 0.282 0.718 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.138 -1.734 11.451 15.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.086 4.086 3 N -0.245 5.245 4 C -0.089 4.089 5 C -0.180 4.180 6 C -0.162 4.162 7 C -0.043 4.043 8 H 0.079 0.921 9 C 0.009 3.991 10 N -0.875 5.875 11 S 2.786 3.214 12 O -0.971 6.971 13 O -0.958 6.958 14 C -0.725 4.725 15 C -0.165 4.165 16 C -0.141 4.141 17 C -0.134 4.134 18 C 0.092 3.908 19 C -0.496 4.496 20 H 0.101 0.899 21 C -0.140 4.140 22 N -0.423 5.423 23 Si 0.733 3.267 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.183 1.183 27 C -0.144 4.144 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.075 0.925 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.106 0.894 41 H 0.242 0.758 42 H 0.124 0.876 43 H 0.116 0.884 44 H 0.136 0.864 45 H 0.093 0.907 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.734 -1.452 10.411 15.024 hybrid contribution 1.513 -0.122 0.945 1.788 sum -9.220 -1.574 11.356 14.712 Atomic orbital electron populations 1.21905 0.94847 1.01824 1.02577 1.22371 0.96133 0.89460 1.00642 1.63547 1.05788 1.12485 1.42673 1.22889 0.96867 0.98044 0.91081 1.22773 0.95576 1.01718 0.97948 1.22719 0.98521 0.97870 0.97125 1.22805 0.87788 0.98279 0.95456 0.92050 1.21277 0.98995 0.87943 0.90924 1.55551 1.83028 1.22415 1.26502 1.01623 0.74950 0.72995 0.71871 1.93510 1.82959 1.41439 1.79146 1.93529 1.74775 1.47904 1.79633 1.29833 1.22912 1.00418 1.19365 1.20091 0.94201 0.95087 1.07087 1.20801 0.94388 0.97017 1.01923 1.21511 1.00060 0.91425 1.00368 1.17665 0.90632 0.93616 0.88888 1.19564 0.94539 0.95562 1.39919 0.89911 1.25884 0.97616 0.98048 0.92495 1.69779 1.11461 1.34879 1.26206 0.86300 0.78581 0.81290 0.80561 1.19366 1.20090 1.18325 1.20849 0.96589 0.93560 1.03374 0.92600 0.91510 0.92213 0.90452 0.94950 0.90475 0.92495 0.90664 0.91699 0.90305 0.89771 0.90839 0.89424 0.75798 0.87610 0.88390 0.86443 0.90675 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.65 37.16 0.36 -1.04 16 2 C 0.04 0.44 5.27 -3.82 -0.02 0.42 16 3 N -0.52 -5.90 4.86 -223.37 -1.09 -6.98 16 4 C 0.04 0.36 6.16 -2.84 -0.02 0.34 16 5 C -0.14 -1.18 6.94 -24.91 -0.17 -1.35 16 6 C -0.12 -1.22 6.49 -24.59 -0.16 -1.37 16 7 C 0.07 0.75 2.66 -66.18 -0.18 0.58 16 8 H 0.06 0.66 7.71 -51.93 -0.40 0.26 16 9 C 0.14 1.90 5.96 -4.04 -0.02 1.88 16 10 N -1.12 -16.70 5.49 -10.61 -0.06 -16.76 16 11 S 2.69 51.44 5.74 -107.50 -0.62 50.82 16 12 O -0.98 -20.30 17.27 -57.17 -0.99 -21.28 16 13 O -0.97 -20.84 16.68 -57.17 -0.95 -21.80 16 14 C -0.63 -13.86 5.94 -39.66 -0.24 -14.10 16 15 C -0.14 -3.14 9.53 -39.29 -0.37 -3.51 16 16 C -0.12 -2.74 10.02 -39.66 -0.40 -3.13 16 17 C -0.11 -2.82 8.67 -38.87 -0.34 -3.15 16 18 C 0.10 2.44 5.51 -106.82 -0.59 1.85 16 19 C -0.47 -11.86 9.03 -37.74 -0.34 -12.20 16 20 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 21 C 0.08 1.85 5.11 -17.34 -0.09 1.77 16 22 N -0.80 -19.60 11.27 55.55 0.63 -18.98 16 23 Si 0.91 17.96 29.59 -169.99 -5.03 12.93 16 24 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 25 H -0.28 -5.34 7.11 56.52 0.40 -4.94 16 26 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 27 C -0.12 -2.91 9.26 -38.87 -0.36 -3.27 16 28 H 0.06 0.45 6.26 -51.93 -0.33 0.12 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.85 5.59 -51.93 -0.29 0.56 16 32 H 0.03 0.30 7.99 -51.93 -0.41 -0.11 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.47 5.99 -51.92 -0.31 0.16 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.87 8.06 -51.93 -0.42 0.45 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.09 1.33 7.68 -51.93 -0.40 0.93 16 41 H 0.41 5.19 6.31 -34.47 -0.22 4.98 16 42 H 0.11 2.10 7.60 -52.48 -0.40 1.70 16 43 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 44 H 0.12 2.95 6.52 -52.49 -0.34 2.60 16 45 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 46 H 0.11 2.56 7.60 -52.49 -0.40 2.17 16 LS Contribution 376.98 15.07 5.68 5.68 Total: -1.00 -30.32 376.98 -12.21 -42.53 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -6.85 Total: 10.14 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: -2.93 Total: -36.30 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -0.52 Total: -42.72 kcal Atomic # 8 Polarization: -41.14 SS G_CDS: -1.94 Total: -43.08 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 16 Polarization: 51.44 SS G_CDS: -0.62 Total: 50.82 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.32 -12.21 -42.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619473230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.082 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds