Wall clock time and date at job start Tue Mar 31 2020 21:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.47276 * 2 1 4 4 C 1.47443 * 110.99813 * 54.99907 * 3 2 1 5 5 C 1.54319 * 107.23879 * 123.25575 * 4 3 2 6 6 C 1.55138 * 103.01397 * 22.28333 * 5 4 3 7 7 C 1.47847 * 110.99905 * 175.83715 * 3 2 1 8 8 H 1.08993 * 110.37520 * 332.58006 * 7 3 2 9 9 C 1.53003 * 110.37073 * 94.81189 * 7 3 2 10 10 N 1.46494 * 109.46977 * 298.40245 * 9 7 3 11 11 S 1.65599 * 120.00131 * 161.58088 * 10 9 7 12 12 O 1.42101 * 106.40511 * 178.81144 * 11 10 9 13 13 O 1.42106 * 106.40230 * 311.73402 * 11 10 9 14 14 C 1.76199 * 107.21884 * 65.27186 * 11 10 9 15 15 C 1.38658 * 119.87632 * 90.00037 * 14 11 10 16 16 C 1.38618 * 120.50248 * 179.97438 * 15 14 11 17 17 C 1.37634 * 120.24739 * 0.02862 * 16 15 14 18 18 C 1.40700 * 119.74784 * 359.97029 * 17 16 15 19 19 C 1.41397 * 120.24607 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99763 * 150.72650 * 19 18 17 21 21 C 1.39942 * 120.00102 * 330.73070 * 19 18 17 22 22 N 1.30824 * 119.99977 * 342.53631 * 21 19 18 23 23 Si 1.86796 * 120.00060 * 162.53592 * 21 19 18 24 24 H 1.48504 * 109.47236 * 90.00171 * 23 21 19 25 25 H 1.48504 * 109.47264 * 209.99755 * 23 21 19 26 26 H 1.48500 * 109.47108 * 330.00069 * 23 21 19 27 27 C 1.37601 * 119.87804 * 269.72991 * 14 11 10 28 28 H 1.08993 * 109.47182 * 298.41385 * 1 2 3 29 29 H 1.09006 * 109.46713 * 58.40955 * 1 2 3 30 30 H 1.08998 * 109.46627 * 178.40997 * 1 2 3 31 31 H 1.09001 * 109.47583 * 240.00373 * 2 1 3 32 32 H 1.09002 * 109.47234 * 120.00228 * 2 1 3 33 33 H 1.08998 * 109.89116 * 242.66438 * 4 3 2 34 34 H 1.09008 * 109.89063 * 3.68760 * 4 3 2 35 35 H 1.08999 * 110.70721 * 140.66200 * 5 4 3 36 36 H 1.08997 * 110.70515 * 263.73032 * 5 4 3 37 37 H 1.09004 * 110.99253 * 206.25516 * 6 5 4 38 38 H 1.09006 * 110.99262 * 82.44133 * 6 5 4 39 39 H 1.09000 * 109.47059 * 178.39960 * 9 7 3 40 40 H 1.09000 * 109.46973 * 58.39998 * 9 7 3 41 41 H 0.97005 * 120.00051 * 341.85113 * 10 9 7 42 42 H 1.08005 * 119.74678 * 0.02562 * 15 14 11 43 43 H 1.08001 * 119.87446 * 180.02562 * 16 15 14 44 44 H 1.07999 * 120.12807 * 180.02562 * 17 16 15 45 45 H 0.96999 * 120.00207 * 179.97438 * 22 21 19 46 46 H 1.07998 * 120.12581 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.4515 2.1463 1.1276 5 6 2.6352 2.7019 1.9470 6 6 3.7998 2.7026 0.9221 7 6 3.4942 1.4256 0.1002 8 1 3.8639 0.5410 0.6188 9 6 4.1201 1.5258 -1.2924 10 7 3.7589 0.3423 -2.0764 11 16 3.8934 0.3696 -3.7267 12 8 3.5006 -0.9176 -4.1828 13 8 3.2708 1.5712 -4.1602 14 6 5.6061 0.5312 -4.1078 15 6 6.3880 -0.6026 -4.2680 16 6 7.7366 -0.4906 -4.5685 17 6 8.3145 0.7504 -4.7106 18 6 7.5308 1.9079 -4.5503 19 6 8.1136 3.1881 -4.6944 20 1 7.5150 4.0181 -5.0398 21 6 9.4659 3.3797 -4.3896 22 7 10.1037 2.4987 -3.6626 23 14 10.3602 4.8934 -5.0207 24 1 10.2371 5.9910 -4.0280 25 1 11.7951 4.5708 -5.2264 26 1 9.7595 5.3219 -6.3094 27 6 6.1615 1.7820 -4.2509 28 1 -0.3633 0.4890 0.9038 29 1 -0.3633 0.5384 -0.8754 30 1 -0.3632 -1.0273 -0.0285 31 1 1.8935 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.8431 2.9684 0.7508 34 1 0.8429 1.4895 1.7493 35 1 2.4242 3.7144 2.2912 36 1 2.8606 2.0488 2.7900 37 1 4.7632 2.6216 1.4256 38 1 3.7643 3.5909 0.2912 39 1 5.2047 1.5834 -1.1999 40 1 3.7502 2.4204 -1.7934 41 1 3.4371 -0.4561 -1.6292 42 1 5.9427 -1.5805 -4.1587 43 1 8.3360 -1.3805 -4.6915 44 1 9.3652 0.8354 -4.9451 45 1 11.0411 2.6313 -3.4516 46 1 5.5496 2.6637 -4.1304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619473230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:36 Heat of formation + Delta-G solvation = -76.730650 kcal Electronic energy + Delta-G solvation = -27777.686349 eV Core-core repulsion = 23985.628055 eV Total energy + Delta-G solvation = -3792.058294 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.40088 -39.44573 -38.23841 -36.88364 -35.99823 -35.61734 -34.32035 -31.90031 -31.61546 -30.58319 -29.45408 -27.31517 -26.06383 -23.70858 -23.57349 -22.80666 -21.75319 -21.05141 -20.48773 -19.55130 -18.46035 -17.79728 -17.54471 -17.21584 -16.90677 -16.50201 -16.37003 -15.76703 -15.38097 -15.22463 -15.05815 -14.87971 -14.32701 -14.24738 -14.04938 -13.73809 -13.52196 -13.40735 -13.31687 -13.15037 -13.03195 -13.00179 -12.92958 -12.81246 -12.62479 -12.47068 -12.21794 -12.10954 -12.02774 -11.85282 -11.74111 -11.55261 -11.52071 -11.34837 -11.11747 -10.38097 -9.85903 -9.51771 -9.18756 -8.71618 -6.43941 -0.47061 0.39685 0.84996 1.38951 1.44931 1.53226 2.16171 2.19718 2.57984 2.78955 2.97231 3.47017 3.50939 3.69067 3.76499 4.01359 4.15301 4.24853 4.30032 4.32192 4.36324 4.43501 4.50299 4.60157 4.63567 4.68609 4.81930 4.83245 4.87325 4.94250 4.98077 5.04186 5.07015 5.10025 5.14365 5.21464 5.24082 5.34129 5.40318 5.41319 5.56354 5.86483 5.94483 6.05476 6.09914 6.14794 6.22405 6.52782 6.81210 6.85725 8.28412 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.003549 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.079821 B = 7888.137613 C = 9268.420813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.037 3.963 3 N -0.541 5.541 4 C 0.038 3.962 5 C -0.133 4.133 6 C -0.126 4.126 7 C 0.070 3.930 8 H 0.073 0.927 9 C 0.131 3.869 10 N -1.098 6.098 11 S 2.718 3.282 12 O -0.991 6.991 13 O -0.992 6.992 14 C -0.639 4.639 15 C -0.146 4.146 16 C -0.123 4.123 17 C -0.136 4.136 18 C 0.068 3.932 19 C -0.503 4.503 20 H 0.078 0.922 21 C 0.042 3.958 22 N -0.824 5.824 23 Si 0.979 3.021 24 H -0.260 1.260 25 H -0.265 1.265 26 H -0.262 1.262 27 C -0.139 4.139 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.421 0.579 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.107 0.893 45 H 0.291 0.709 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.534 -2.158 13.008 16.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.091 4.091 3 N -0.266 5.266 4 C -0.089 4.089 5 C -0.171 4.171 6 C -0.165 4.165 7 C -0.040 4.040 8 H 0.091 0.909 9 C 0.004 3.996 10 N -0.861 5.861 11 S 2.811 3.189 12 O -0.982 6.982 13 O -0.982 6.982 14 C -0.728 4.728 15 C -0.167 4.167 16 C -0.142 4.142 17 C -0.155 4.155 18 C 0.065 3.935 19 C -0.532 4.532 20 H 0.096 0.904 21 C -0.174 4.174 22 N -0.450 5.450 23 Si 0.800 3.200 24 H -0.185 1.185 25 H -0.190 1.190 26 H -0.186 1.186 27 C -0.160 4.160 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.259 0.741 42 H 0.149 0.851 43 H 0.145 0.855 44 H 0.125 0.875 45 H 0.102 0.898 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.119 -1.898 11.966 16.444 hybrid contribution 1.541 -0.072 0.511 1.625 sum -9.577 -1.971 12.477 15.852 Atomic orbital electron populations 1.21886 0.94006 1.02533 1.02415 1.22432 0.96900 0.89013 1.00739 1.63469 1.05631 1.13357 1.44157 1.22920 0.97278 0.97975 0.90761 1.22746 0.94159 1.02660 0.97569 1.22743 0.99768 0.96629 0.97311 1.22747 0.88071 0.99585 0.93575 0.90873 1.21407 0.99012 0.86769 0.92382 1.55174 1.82475 1.23510 1.24951 1.00794 0.73430 0.72047 0.72663 1.93485 1.82645 1.41787 1.80241 1.93499 1.74727 1.49097 1.80875 1.30271 1.24638 0.99754 1.18112 1.20471 0.94111 0.96144 1.05986 1.21130 0.95077 0.97242 1.00730 1.21517 0.99693 0.92301 1.02022 1.18004 0.91670 0.94259 0.89568 1.19794 0.95933 0.95693 1.41765 0.90373 1.26654 0.97666 1.01052 0.92005 1.69810 1.12124 1.36500 1.26549 0.85246 0.77499 0.77567 0.79727 1.18484 1.18956 1.18582 1.20905 0.96273 0.94497 1.04360 0.91421 0.93079 0.91008 0.91550 0.93532 0.90954 0.91096 0.89551 0.90508 0.89443 0.90794 0.91343 0.90931 0.74110 0.85150 0.85473 0.87543 0.89825 0.87090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.65 71.98 0.69 -1.76 16 2 C 0.04 0.70 5.27 86.30 0.45 1.15 16 3 N -0.54 -11.46 4.86 -860.62 -4.19 -15.65 16 4 C 0.04 0.63 6.16 86.65 0.53 1.16 16 5 C -0.13 -1.90 6.94 31.77 0.22 -1.68 16 6 C -0.13 -2.30 6.49 31.98 0.21 -2.09 16 7 C 0.07 1.50 2.66 45.39 0.12 1.62 16 8 H 0.07 1.40 7.71 -2.39 -0.02 1.38 16 9 C 0.13 3.65 5.96 86.38 0.51 4.17 16 10 N -1.10 -32.03 5.49 -187.50 -1.03 -33.06 16 11 S 2.72 102.96 5.74 -56.49 -0.32 102.63 16 12 O -0.99 -39.84 17.27 -128.00 -2.21 -42.05 16 13 O -0.99 -43.04 16.68 -128.00 -2.13 -45.18 16 14 C -0.64 -28.03 5.94 22.22 0.13 -27.89 16 15 C -0.15 -6.28 9.53 22.46 0.21 -6.06 16 16 C -0.12 -5.46 10.02 22.22 0.22 -5.23 16 17 C -0.14 -6.85 8.67 22.73 0.20 -6.66 16 18 C 0.07 3.60 5.51 -21.29 -0.12 3.48 16 19 C -0.50 -26.45 9.03 23.46 0.21 -26.24 16 20 H 0.08 4.01 7.90 -2.91 -0.02 3.99 16 21 C 0.04 2.03 5.11 85.26 0.44 2.46 16 22 N -0.82 -41.06 11.27 21.83 0.25 -40.81 16 23 Si 0.98 36.97 29.59 68.60 2.03 39.00 16 24 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 25 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 26 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 27 C -0.14 -6.82 9.26 22.73 0.21 -6.61 16 28 H 0.07 0.93 6.26 -2.39 -0.01 0.91 16 29 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.35 5.59 -2.39 -0.01 1.34 16 32 H 0.05 0.74 7.99 -2.39 -0.02 0.72 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 0.97 5.99 -2.38 -0.01 0.96 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.07 1.50 8.06 -2.38 -0.02 1.48 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.07 2.25 7.68 -2.39 -0.02 2.23 16 41 H 0.42 10.12 6.31 -96.74 -0.61 9.51 16 42 H 0.13 4.90 7.60 -2.91 -0.02 4.87 16 43 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 44 H 0.11 5.51 6.52 -2.91 -0.02 5.49 16 45 H 0.29 13.05 8.30 -92.71 -0.77 12.28 16 46 H 0.11 5.30 7.60 -2.91 -0.02 5.28 16 Total: -1.00 -65.29 376.98 -2.98 -68.27 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: 0.38 Total: 37.04 kcal Atomic # 6 Polarization: -74.45 SS G_CDS: 4.25 Total: -70.20 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -4.97 Total: -89.51 kcal Atomic # 8 Polarization: -82.89 SS G_CDS: -4.34 Total: -87.23 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Atomic # 16 Polarization: 102.96 SS G_CDS: -0.32 Total: 102.63 kcal Total: -65.29 -2.98 -68.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619473230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.463 kcal (2) G-P(sol) polarization free energy of solvation -65.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds