Wall clock time and date at job start Tue Mar 31 2020 21:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47149 * 2 1 4 4 C 1.53002 * 109.47263 * 239.99720 * 2 1 3 5 5 N 1.46493 * 109.47064 * 294.72923 * 4 2 1 6 6 S 1.65601 * 120.00157 * 165.69654 * 5 4 2 7 7 O 1.42103 * 106.40345 * 178.26578 * 6 5 4 8 8 O 1.42099 * 106.40051 * 311.18713 * 6 5 4 9 9 C 1.76198 * 107.21697 * 64.72386 * 6 5 4 10 10 C 1.38658 * 119.87620 * 269.73095 * 9 6 5 11 11 C 1.38614 * 120.50046 * 179.72464 * 10 9 6 12 12 C 1.37640 * 120.24567 * 0.54675 * 11 10 9 13 13 C 1.40694 * 119.74942 * 359.72951 * 12 11 10 14 14 C 1.41389 * 120.24735 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99943 * 153.66540 * 14 13 12 16 16 C 1.39949 * 120.00092 * 333.66634 * 14 13 12 17 17 N 1.30820 * 119.99874 * 346.41131 * 16 14 13 18 18 Si 1.86802 * 120.00067 * 166.41210 * 16 14 13 19 19 H 1.48504 * 109.46950 * 60.00043 * 18 16 14 20 20 H 1.48499 * 109.46950 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47079 * 300.00304 * 18 16 14 22 22 C 1.37599 * 119.87515 * 90.00195 * 9 6 5 23 23 N 1.46904 * 109.47151 * 119.99530 * 2 1 3 24 24 C 1.48535 * 110.99921 * 177.51371 * 23 2 1 25 25 C 1.54936 * 103.22451 * 159.72171 * 24 23 2 26 26 C 1.54591 * 102.92424 * 322.58690 * 25 24 23 27 27 C 1.47896 * 110.99857 * 294.91324 * 23 2 1 28 28 H 1.09003 * 109.47501 * 300.00459 * 1 2 3 29 29 H 1.09010 * 109.47128 * 60.00131 * 1 2 3 30 30 H 1.08996 * 109.47278 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46698 * 174.72924 * 4 2 1 32 32 H 1.08998 * 109.46613 * 54.73146 * 4 2 1 33 33 H 0.97007 * 119.99803 * 345.42451 * 5 4 2 34 34 H 1.07996 * 119.74903 * 359.97438 * 10 9 6 35 35 H 1.07996 * 119.87545 * 180.25726 * 11 10 9 36 36 H 1.08004 * 120.12175 * 179.74942 * 12 11 10 37 37 H 0.96995 * 119.99865 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.12983 * 359.97438 * 22 9 6 39 39 H 1.08989 * 110.66780 * 278.15629 * 24 23 2 40 40 H 1.09001 * 110.66783 * 41.29081 * 24 23 2 41 41 H 1.09001 * 110.72358 * 204.22887 * 25 24 23 42 42 H 1.09002 * 110.72220 * 80.94542 * 25 24 23 43 43 H 1.09001 * 110.31214 * 263.04318 * 26 25 24 44 44 H 1.08997 * 110.31403 * 140.87259 * 26 25 24 45 45 H 1.09006 * 109.91977 * 333.50213 * 27 23 2 46 46 H 1.08997 * 109.92393 * 94.80557 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6580 -2.1342 -1.1874 6 16 1.7582 -3.0792 -2.5436 7 8 1.3634 -4.3868 -2.1517 8 8 1.1198 -2.3542 -3.5858 9 6 3.4616 -3.1840 -2.9816 10 6 4.0108 -2.2506 -3.8476 11 6 5.3507 -2.3175 -4.1964 12 6 6.1486 -3.3202 -3.6941 13 6 5.6009 -4.2761 -2.8191 14 6 6.4111 -5.3103 -2.2966 15 1 6.1605 -5.7668 -1.3503 16 6 7.5378 -5.7424 -3.0053 17 7 7.6986 -5.3913 -4.2552 18 14 8.8120 -6.8206 -2.1667 19 1 8.1712 -8.0798 -1.7093 20 1 9.8995 -7.1394 -3.1263 21 1 9.3779 -6.1003 -0.9979 22 6 4.2406 -4.1950 -2.4675 23 7 2.0196 -0.6924 1.1995 24 6 3.5032 -0.7645 1.2041 25 6 3.8413 -1.0136 2.6955 26 6 2.7937 -0.1512 3.4362 27 6 1.6479 0.0454 2.4262 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 3.1259 -0.6402 -1.2976 32 1 1.6016 -0.2649 -2.1366 33 1 1.3502 -2.5173 -0.3510 34 1 3.3909 -1.4633 -4.2502 35 1 5.7689 -1.5828 -4.8685 36 1 7.1914 -3.3727 -3.9704 37 1 8.4797 -5.6905 -4.7464 38 1 3.8099 -4.9233 -1.7962 39 1 3.8500 -1.5936 0.5874 40 1 3.9352 0.1766 0.8637 41 1 4.8516 -0.6739 2.9239 42 1 3.7213 -2.0673 2.9474 43 1 3.2235 0.8116 3.7129 44 1 2.4318 -0.6733 4.3219 45 1 1.5296 1.1053 2.2006 46 1 0.7203 -0.3559 2.8344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619476413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:52 Heat of formation + Delta-G solvation = -59.015482 kcal Electronic energy + Delta-G solvation = -27947.280519 eV Core-core repulsion = 24155.990412 eV Total energy + Delta-G solvation = -3791.290107 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.46872 -37.62041 -36.60555 -35.75481 -35.21310 -33.81154 -32.37240 -30.05068 -29.75804 -29.35457 -28.74402 -25.93067 -25.45433 -22.33727 -21.84445 -20.99096 -20.83395 -20.06780 -19.04487 -17.95595 -17.04092 -16.48222 -15.98663 -15.88075 -15.45825 -15.16889 -14.74509 -14.53511 -14.24980 -14.06122 -13.48068 -13.40564 -13.30533 -13.09755 -12.77426 -12.55190 -12.35384 -11.91824 -11.76944 -11.57055 -11.52591 -11.44975 -11.43734 -11.35479 -11.31435 -11.23423 -11.12166 -11.01020 -10.83807 -10.80133 -10.65934 -10.59650 -9.76561 -9.63397 -9.35825 -9.04180 -8.54460 -8.00753 -7.66145 -6.86865 -4.52768 1.11742 2.23066 2.65423 3.00700 3.03331 3.08427 3.60337 3.84531 3.88709 4.31042 4.46886 4.49686 4.53731 4.77462 4.84865 4.91573 5.10195 5.17324 5.23707 5.38031 5.40932 5.48915 5.56350 5.63960 5.68839 5.72098 5.75748 5.81749 5.90257 6.02441 6.05006 6.07641 6.12627 6.19153 6.21241 6.67910 6.77939 6.78897 6.87977 6.94561 7.06710 7.23892 7.39928 7.44460 7.74270 7.83106 7.96699 8.42418 8.69756 8.73913 10.08021 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.003830 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.373175 B = 7308.266077 C = 8777.539426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.068 3.932 3 H 0.054 0.946 4 C 0.128 3.872 5 N -1.110 6.110 6 S 2.689 3.311 7 O -0.973 6.973 8 O -0.978 6.978 9 C -0.633 4.633 10 C -0.147 4.147 11 C -0.123 4.123 12 C -0.115 4.115 13 C 0.091 3.909 14 C -0.461 4.461 15 H 0.081 0.919 16 C 0.073 3.927 17 N -0.800 5.800 18 Si 0.914 3.086 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.263 1.263 22 C -0.120 4.120 23 N -0.511 5.511 24 C 0.031 3.969 25 C -0.124 4.124 26 C -0.131 4.131 27 C 0.038 3.962 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.421 0.579 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.127 0.873 37 H 0.283 0.717 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.042 0.958 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.443 11.531 11.109 17.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.042 4.042 3 H 0.072 0.928 4 C 0.000 4.000 5 N -0.870 5.870 6 S 2.784 3.216 7 O -0.964 6.964 8 O -0.968 6.968 9 C -0.725 4.725 10 C -0.168 4.168 11 C -0.143 4.143 12 C -0.135 4.135 13 C 0.087 3.913 14 C -0.490 4.490 15 H 0.099 0.901 16 C -0.144 4.144 17 N -0.425 5.425 18 Si 0.738 3.262 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.142 4.142 23 N -0.236 5.236 24 C -0.096 4.096 25 C -0.162 4.162 26 C -0.170 4.170 27 C -0.090 4.090 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.257 0.743 34 H 0.123 0.877 35 H 0.115 0.885 36 H 0.144 0.856 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.061 0.939 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.212 10.679 10.288 16.489 hybrid contribution 1.719 0.302 0.563 1.834 sum -5.493 10.981 10.851 16.386 Atomic orbital electron populations 1.21831 0.93696 1.03113 1.01573 1.22011 0.96483 0.95489 0.90250 0.92841 1.21269 0.99858 0.81104 0.97725 1.55381 1.83155 1.19497 1.28984 1.01638 0.75026 0.72414 0.72500 1.93538 1.82727 1.37457 1.82639 1.93501 1.74460 1.73558 1.55312 1.29787 1.22941 1.06759 1.12972 1.20096 0.95791 0.99572 1.01326 1.20822 0.94050 0.98906 1.00496 1.21689 0.99913 0.92806 0.99087 1.17684 0.90552 0.91822 0.91211 1.19572 1.07148 1.16176 1.06116 0.90079 1.25919 0.98255 0.95986 0.94234 1.69746 1.26944 1.37798 1.08045 0.86271 0.79577 0.80474 0.79889 1.18837 1.20274 1.18784 1.20783 0.93782 0.97035 1.02572 1.64731 1.10282 1.47511 1.01114 1.23306 0.87563 1.01437 0.97336 1.22478 0.98389 1.00848 0.94495 1.22406 0.96034 1.00035 0.98483 1.22838 0.98930 0.96415 0.90813 0.92788 0.91866 0.91325 0.91534 0.90051 0.74316 0.87694 0.88485 0.85579 0.90590 0.87061 0.88890 0.93702 0.91136 0.90530 0.91824 0.91172 0.93949 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.06 37.15 0.34 -1.03 16 2 C 0.07 0.69 2.07 -67.71 -0.14 0.55 16 3 H 0.05 0.50 7.95 -51.93 -0.41 0.09 16 4 C 0.13 1.59 5.35 -4.04 -0.02 1.57 16 5 N -1.11 -15.97 5.45 -10.62 -0.06 -16.03 16 6 S 2.69 50.61 5.73 -107.50 -0.62 49.99 16 7 O -0.97 -20.94 17.27 -57.17 -0.99 -21.92 16 8 O -0.98 -20.00 16.75 -57.17 -0.96 -20.96 16 9 C -0.63 -13.69 5.93 -39.66 -0.24 -13.92 16 10 C -0.15 -3.13 9.53 -39.29 -0.37 -3.51 16 11 C -0.12 -2.73 10.02 -39.66 -0.40 -3.13 16 12 C -0.12 -2.84 8.68 -38.87 -0.34 -3.18 16 13 C 0.09 2.33 5.57 -106.83 -0.59 1.73 16 14 C -0.46 -11.78 9.07 -37.74 -0.34 -12.12 16 15 H 0.08 1.98 7.88 -52.48 -0.41 1.57 16 16 C 0.07 1.78 5.22 -17.34 -0.09 1.69 16 17 N -0.80 -20.02 10.83 55.55 0.60 -19.42 16 18 Si 0.91 18.13 29.58 -169.99 -5.03 13.10 16 19 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 22 C -0.12 -2.88 9.26 -38.87 -0.36 -3.24 16 23 N -0.51 -5.36 4.36 -222.50 -0.97 -6.33 16 24 C 0.03 0.34 5.33 -1.90 -0.01 0.33 16 25 C -0.12 -1.19 7.06 -24.87 -0.18 -1.36 16 26 C -0.13 -1.07 6.93 -25.37 -0.18 -1.25 16 27 C 0.04 0.33 5.55 -2.75 -0.02 0.32 16 28 H 0.05 0.44 7.35 -51.93 -0.38 0.06 16 29 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 30 H 0.07 0.71 7.54 -51.93 -0.39 0.32 16 31 H 0.07 0.85 7.18 -51.93 -0.37 0.47 16 32 H 0.08 0.99 7.77 -51.93 -0.40 0.59 16 33 H 0.42 5.62 7.80 -34.47 -0.27 5.35 16 34 H 0.11 2.02 7.59 -52.49 -0.40 1.62 16 35 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.13 3.18 6.14 -52.48 -0.32 2.86 16 37 H 0.28 6.46 8.30 -40.82 -0.34 6.13 16 38 H 0.11 2.58 7.60 -52.49 -0.40 2.18 16 39 H 0.09 1.20 7.77 -51.93 -0.40 0.79 16 40 H 0.04 0.47 8.02 -51.93 -0.42 0.06 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.04 0.35 7.65 -51.93 -0.40 -0.05 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 379.39 15.07 5.72 5.72 Total: -1.00 -30.06 379.39 -12.31 -42.37 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: -7.08 Total: 10.04 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: -2.93 Total: -36.55 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -0.43 Total: -41.78 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -1.94 Total: -42.88 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Atomic # 16 Polarization: 50.61 SS G_CDS: -0.62 Total: 49.99 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -30.06 -12.31 -42.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619476413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.647 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds