Wall clock time and date at job start Tue Mar 31 2020 21:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47149 * 2 1 4 4 C 1.53002 * 109.47263 * 239.99720 * 2 1 3 5 5 N 1.46493 * 109.47064 * 294.72923 * 4 2 1 6 6 S 1.65601 * 120.00157 * 165.69654 * 5 4 2 7 7 O 1.42103 * 106.40345 * 178.26578 * 6 5 4 8 8 O 1.42099 * 106.40051 * 311.18713 * 6 5 4 9 9 C 1.76198 * 107.21697 * 64.72386 * 6 5 4 10 10 C 1.38658 * 119.87620 * 269.73095 * 9 6 5 11 11 C 1.38614 * 120.50046 * 179.72464 * 10 9 6 12 12 C 1.37640 * 120.24567 * 0.54675 * 11 10 9 13 13 C 1.40694 * 119.74942 * 359.72951 * 12 11 10 14 14 C 1.41389 * 120.24735 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99943 * 153.66540 * 14 13 12 16 16 C 1.39949 * 120.00092 * 333.66634 * 14 13 12 17 17 N 1.30820 * 119.99874 * 346.41131 * 16 14 13 18 18 Si 1.86802 * 120.00067 * 166.41210 * 16 14 13 19 19 H 1.48504 * 109.46950 * 60.00043 * 18 16 14 20 20 H 1.48499 * 109.46950 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47079 * 300.00304 * 18 16 14 22 22 C 1.37599 * 119.87515 * 90.00195 * 9 6 5 23 23 N 1.46904 * 109.47151 * 119.99530 * 2 1 3 24 24 C 1.48535 * 110.99921 * 177.51371 * 23 2 1 25 25 C 1.54936 * 103.22451 * 159.72171 * 24 23 2 26 26 C 1.54591 * 102.92424 * 322.58690 * 25 24 23 27 27 C 1.47896 * 110.99857 * 294.91324 * 23 2 1 28 28 H 1.09003 * 109.47501 * 300.00459 * 1 2 3 29 29 H 1.09010 * 109.47128 * 60.00131 * 1 2 3 30 30 H 1.08996 * 109.47278 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46698 * 174.72924 * 4 2 1 32 32 H 1.08998 * 109.46613 * 54.73146 * 4 2 1 33 33 H 0.97007 * 119.99803 * 345.42451 * 5 4 2 34 34 H 1.07996 * 119.74903 * 359.97438 * 10 9 6 35 35 H 1.07996 * 119.87545 * 180.25726 * 11 10 9 36 36 H 1.08004 * 120.12175 * 179.74942 * 12 11 10 37 37 H 0.96995 * 119.99865 * 179.97438 * 17 16 14 38 38 H 1.08002 * 120.12983 * 359.97438 * 22 9 6 39 39 H 1.08989 * 110.66780 * 278.15629 * 24 23 2 40 40 H 1.09001 * 110.66783 * 41.29081 * 24 23 2 41 41 H 1.09001 * 110.72358 * 204.22887 * 25 24 23 42 42 H 1.09002 * 110.72220 * 80.94542 * 25 24 23 43 43 H 1.09001 * 110.31214 * 263.04318 * 26 25 24 44 44 H 1.08997 * 110.31403 * 140.87259 * 26 25 24 45 45 H 1.09006 * 109.91977 * 333.50213 * 27 23 2 46 46 H 1.08997 * 109.92393 * 94.80557 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6580 -2.1342 -1.1874 6 16 1.7582 -3.0792 -2.5436 7 8 1.3634 -4.3868 -2.1517 8 8 1.1198 -2.3542 -3.5858 9 6 3.4616 -3.1840 -2.9816 10 6 4.0108 -2.2506 -3.8476 11 6 5.3507 -2.3175 -4.1964 12 6 6.1486 -3.3202 -3.6941 13 6 5.6009 -4.2761 -2.8191 14 6 6.4111 -5.3103 -2.2966 15 1 6.1605 -5.7668 -1.3503 16 6 7.5378 -5.7424 -3.0053 17 7 7.6986 -5.3913 -4.2552 18 14 8.8120 -6.8206 -2.1667 19 1 8.1712 -8.0798 -1.7093 20 1 9.8995 -7.1394 -3.1263 21 1 9.3779 -6.1003 -0.9979 22 6 4.2406 -4.1950 -2.4675 23 7 2.0196 -0.6924 1.1995 24 6 3.5032 -0.7645 1.2041 25 6 3.8413 -1.0136 2.6955 26 6 2.7937 -0.1512 3.4362 27 6 1.6479 0.0454 2.4262 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 3.1259 -0.6402 -1.2976 32 1 1.6016 -0.2649 -2.1366 33 1 1.3502 -2.5173 -0.3510 34 1 3.3909 -1.4633 -4.2502 35 1 5.7689 -1.5828 -4.8685 36 1 7.1914 -3.3727 -3.9704 37 1 8.4797 -5.6905 -4.7464 38 1 3.8099 -4.9233 -1.7962 39 1 3.8500 -1.5936 0.5874 40 1 3.9352 0.1766 0.8637 41 1 4.8516 -0.6739 2.9239 42 1 3.7213 -2.0673 2.9474 43 1 3.2235 0.8116 3.7129 44 1 2.4318 -0.6733 4.3219 45 1 1.5296 1.1053 2.2006 46 1 0.7203 -0.3559 2.8344 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619476413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:51 Heat of formation + Delta-G solvation = -78.756587 kcal Electronic energy + Delta-G solvation = -27948.136557 eV Core-core repulsion = 24155.990412 eV Total energy + Delta-G solvation = -3792.146146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.27650 -39.43286 -38.22976 -36.87631 -36.73201 -35.64313 -33.35476 -31.89401 -31.56087 -30.09541 -29.55383 -27.34653 -26.85338 -23.64110 -23.14274 -22.78020 -21.60661 -20.94191 -20.53493 -19.61085 -18.50850 -17.74332 -17.45455 -16.90613 -16.82066 -16.65620 -16.43720 -15.74611 -15.41146 -15.17750 -15.00985 -14.87119 -14.32606 -14.28985 -13.93105 -13.71963 -13.56733 -13.24602 -13.16988 -13.08737 -13.05793 -13.04896 -12.99489 -12.82664 -12.56781 -12.33703 -12.21037 -12.18522 -12.04282 -11.90173 -11.71319 -11.54566 -11.38320 -11.34315 -11.15164 -10.32582 -9.82166 -9.52335 -9.32254 -8.68783 -6.45493 -0.43381 0.43073 0.85616 1.37392 1.47164 1.49661 2.17090 2.21225 2.58365 2.83826 3.04189 3.49750 3.53494 3.70417 3.79162 3.95684 4.14929 4.17288 4.31842 4.40314 4.41963 4.45769 4.53197 4.67230 4.76683 4.81071 4.86187 4.91238 4.92692 4.95601 5.00732 5.02594 5.07444 5.12083 5.14255 5.22477 5.23735 5.36853 5.42974 5.43880 5.58051 5.89952 5.96023 6.00198 6.11909 6.14054 6.28239 6.54261 6.81871 6.86089 8.28271 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011499 B = 0.003830 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.373175 B = 7308.266077 C = 8777.539426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.072 3.928 3 H 0.071 0.929 4 C 0.118 3.882 5 N -1.092 6.092 6 S 2.719 3.281 7 O -1.001 7.001 8 O -0.988 6.988 9 C -0.638 4.638 10 C -0.143 4.143 11 C -0.124 4.124 12 C -0.136 4.136 13 C 0.062 3.938 14 C -0.498 4.498 15 H 0.079 0.921 16 C 0.035 3.965 17 N -0.830 5.830 18 Si 0.985 3.015 19 H -0.262 1.262 20 H -0.267 1.267 21 H -0.257 1.257 22 C -0.141 4.141 23 N -0.523 5.523 24 C 0.029 3.971 25 C -0.125 4.125 26 C -0.126 4.126 27 C 0.038 3.962 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.428 0.572 34 H 0.133 0.867 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.290 0.710 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.054 0.946 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.002 13.173 12.071 19.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.038 4.038 3 H 0.089 0.911 4 C -0.008 4.008 5 N -0.856 5.856 6 S 2.811 3.189 7 O -0.991 6.991 8 O -0.978 6.978 9 C -0.727 4.727 10 C -0.164 4.164 11 C -0.143 4.143 12 C -0.156 4.156 13 C 0.059 3.941 14 C -0.528 4.528 15 H 0.097 0.903 16 C -0.180 4.180 17 N -0.456 5.456 18 Si 0.805 3.195 19 H -0.187 1.187 20 H -0.191 1.191 21 H -0.181 1.181 22 C -0.162 4.162 23 N -0.249 5.249 24 C -0.098 4.098 25 C -0.163 4.163 26 C -0.164 4.164 27 C -0.090 4.090 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.107 0.893 33 H 0.266 0.734 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.132 0.868 37 H 0.101 0.899 38 H 0.125 0.875 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.757 12.328 11.241 18.399 hybrid contribution 1.778 -0.091 0.258 1.799 sum -5.979 12.237 11.499 17.825 Atomic orbital electron populations 1.21837 0.92866 1.02713 1.02714 1.22001 0.97038 0.95767 0.88957 0.91131 1.21543 0.99938 0.79739 0.99603 1.55002 1.82565 1.20059 1.27960 1.00768 0.73427 0.71886 0.72838 1.93496 1.82680 1.39717 1.83193 1.93484 1.73985 1.73666 1.56632 1.30257 1.24520 1.05732 1.12164 1.20482 0.95815 0.99738 1.00365 1.21156 0.94330 0.98623 1.00236 1.21689 0.99857 0.93924 1.00120 1.18027 0.91502 0.92483 0.92050 1.19838 1.08893 1.17321 1.06714 0.90333 1.26747 0.99593 0.97049 0.94584 1.69796 1.27784 1.38867 1.09184 0.85207 0.76899 0.78403 0.78973 1.18678 1.19102 1.18104 1.20831 0.93722 0.98158 1.03497 1.64705 1.09772 1.48438 1.01962 1.23238 0.88197 1.00605 0.97801 1.22470 0.99374 1.00613 0.93875 1.22391 0.95294 1.00339 0.98360 1.22891 0.99227 0.96865 0.89986 0.91235 0.91215 0.92477 0.91906 0.89271 0.73409 0.84965 0.85552 0.86764 0.89884 0.87524 0.91556 0.93197 0.90550 0.91667 0.90608 0.90480 0.92805 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.06 71.98 0.65 -1.69 16 2 C 0.07 1.32 2.07 44.91 0.09 1.41 16 3 H 0.07 1.09 7.95 -2.38 -0.02 1.07 16 4 C 0.12 2.75 5.35 86.38 0.46 3.21 16 5 N -1.09 -30.41 5.45 -187.50 -1.02 -31.43 16 6 S 2.72 100.77 5.73 -56.49 -0.32 100.45 16 7 O -1.00 -43.17 17.27 -128.00 -2.21 -45.38 16 8 O -0.99 -38.84 16.75 -128.00 -2.14 -40.98 16 9 C -0.64 -27.67 5.93 22.22 0.13 -27.54 16 10 C -0.14 -5.99 9.53 22.46 0.21 -5.77 16 11 C -0.12 -5.47 10.02 22.22 0.22 -5.24 16 12 C -0.14 -6.89 8.68 22.73 0.20 -6.69 16 13 C 0.06 3.33 5.57 -21.29 -0.12 3.21 16 14 C -0.50 -26.53 9.07 23.46 0.21 -26.32 16 15 H 0.08 4.03 7.88 -2.91 -0.02 4.01 16 16 C 0.03 1.72 5.22 85.26 0.44 2.16 16 17 N -0.83 -42.53 10.83 21.83 0.24 -42.30 16 18 Si 0.98 37.55 29.58 68.60 2.03 39.58 16 19 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 20 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 21 H -0.26 -9.44 7.11 99.48 0.71 -8.74 16 22 C -0.14 -6.98 9.26 22.73 0.21 -6.77 16 23 N -0.52 -10.10 4.36 -857.85 -3.74 -13.84 16 24 C 0.03 0.62 5.33 86.65 0.46 1.08 16 25 C -0.13 -2.29 7.06 31.80 0.22 -2.06 16 26 C -0.13 -1.78 6.93 31.47 0.22 -1.56 16 27 C 0.04 0.56 5.55 86.45 0.48 1.04 16 28 H 0.07 0.92 7.35 -2.39 -0.02 0.90 16 29 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.06 1.07 7.54 -2.39 -0.02 1.05 16 31 H 0.06 1.53 7.18 -2.39 -0.02 1.51 16 32 H 0.09 1.96 7.77 -2.39 -0.02 1.95 16 33 H 0.43 11.09 7.80 -96.74 -0.75 10.33 16 34 H 0.13 4.77 7.59 -2.91 -0.02 4.75 16 35 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 36 H 0.11 5.97 6.14 -2.91 -0.02 5.95 16 37 H 0.29 13.45 8.30 -92.71 -0.77 12.68 16 38 H 0.11 5.21 7.60 -2.91 -0.02 5.19 16 39 H 0.07 1.75 7.77 -2.39 -0.02 1.73 16 40 H 0.05 0.99 8.02 -2.39 -0.02 0.97 16 41 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.05 0.70 7.65 -2.38 -0.02 0.68 16 46 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -65.32 379.39 -2.84 -68.16 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: 0.23 Total: 37.27 kcal Atomic # 6 Polarization: -75.63 SS G_CDS: 4.11 Total: -71.52 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -4.53 Total: -87.57 kcal Atomic # 8 Polarization: -82.01 SS G_CDS: -4.35 Total: -86.36 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 2.03 Total: 39.58 kcal Atomic # 16 Polarization: 100.77 SS G_CDS: -0.32 Total: 100.45 kcal Total: -65.32 -2.84 -68.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619476413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.595 kcal (2) G-P(sol) polarization free energy of solvation -65.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds