Wall clock time and date at job start Tue Mar 31 2020 21:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46541 * 2 1 4 4 C 1.53004 * 109.47086 * 119.99619 * 2 1 3 5 5 N 1.46493 * 109.46832 * 175.00008 * 4 2 1 6 6 S 1.65607 * 119.99831 * 165.00235 * 5 4 2 7 7 O 1.42094 * 106.40233 * 178.54189 * 6 5 4 8 8 O 1.42104 * 106.39893 * 311.46283 * 6 5 4 9 9 C 1.76201 * 107.21727 * 65.00103 * 6 5 4 10 10 C 1.38659 * 119.87342 * 269.72642 * 9 6 5 11 11 C 1.38614 * 120.50164 * 179.72227 * 10 9 6 12 12 C 1.37648 * 120.24448 * 0.55143 * 11 10 9 13 13 C 1.40691 * 119.74440 * 359.72703 * 12 11 10 14 14 C 1.41396 * 120.24466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00365 * 151.15550 * 14 13 12 16 16 C 1.39945 * 120.00044 * 331.14922 * 14 13 12 17 17 N 1.30830 * 119.99580 * 348.70868 * 16 14 13 18 18 Si 1.86794 * 120.00262 * 168.70456 * 16 14 13 19 19 H 1.48500 * 109.46800 * 60.00419 * 18 16 14 20 20 H 1.48499 * 109.47355 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47218 * 300.00427 * 18 16 14 22 22 C 1.37594 * 119.87670 * 90.00024 * 9 6 5 23 23 N 1.46897 * 109.47253 * 239.99931 * 2 1 3 24 24 C 1.47845 * 110.99939 * 300.92895 * 23 2 1 25 25 C 1.54904 * 104.79877 * 146.36207 * 24 23 2 26 26 C 1.55139 * 101.65241 * 322.93160 * 25 24 23 27 27 C 1.47442 * 110.99974 * 61.76980 * 23 2 1 28 28 H 1.09000 * 109.47157 * 187.02757 * 1 2 3 29 29 H 1.09005 * 109.47381 * 307.02824 * 1 2 3 30 30 H 1.08997 * 109.47137 * 67.02750 * 1 2 3 31 31 H 1.08996 * 109.47282 * 295.00352 * 4 2 1 32 32 H 1.09002 * 109.46917 * 55.00235 * 4 2 1 33 33 H 0.96997 * 120.00524 * 345.00236 * 5 4 2 34 34 H 1.08006 * 119.75151 * 0.02562 * 10 9 6 35 35 H 1.07996 * 119.88117 * 180.25624 * 11 10 9 36 36 H 1.07991 * 120.12425 * 179.74717 * 12 11 10 37 37 H 0.97005 * 119.99648 * 179.97438 * 17 16 14 38 38 H 1.07992 * 120.12648 * 359.97438 * 22 9 6 39 39 H 1.09004 * 110.37365 * 27.52872 * 24 23 2 40 40 H 1.09001 * 110.36906 * 265.19479 * 24 23 2 41 41 H 1.08997 * 110.99159 * 204.83253 * 25 24 23 42 42 H 1.09007 * 110.98637 * 81.01741 * 25 24 23 43 43 H 1.08996 * 110.70592 * 154.03507 * 26 25 24 44 44 H 1.09006 * 110.70015 * 277.26769 * 26 25 24 45 45 H 1.08994 * 109.89335 * 117.33751 * 27 23 2 46 46 H 1.09006 * 109.89103 * 356.14544 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 16 4.3574 -1.2175 2.5523 7 8 5.7232 -1.2730 2.1644 8 8 3.8769 -0.3695 3.5864 9 6 3.9009 -2.8588 3.0025 10 6 2.8375 -3.0673 3.8675 11 6 2.4636 -4.3530 4.2257 12 6 3.1533 -5.4380 3.7340 13 6 4.2377 -5.2382 2.8601 14 6 4.9532 -6.3452 2.3483 15 1 5.4349 -6.2778 1.3840 16 6 5.0373 -7.5281 3.0912 17 7 4.6509 -7.5445 4.3410 18 14 5.7013 -9.0837 2.2985 19 1 7.0937 -8.8493 1.8385 20 1 5.6878 -10.1892 3.2900 21 1 4.8512 -9.4492 1.1371 22 6 4.6047 -3.9285 2.4988 23 7 2.0197 -0.6925 -1.1994 24 6 1.5275 -2.0859 -1.2448 25 6 1.3294 -2.3866 -2.7514 26 6 0.8032 -1.0248 -3.2762 27 6 1.5820 0.0002 -2.4252 28 1 -0.3633 -1.0199 0.1257 29 1 -0.3634 0.6189 0.8204 30 1 -0.3633 0.4011 -0.9461 31 1 1.7516 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2952 33 1 3.9646 -0.6667 0.3542 34 1 2.2932 -2.2215 4.2612 35 1 1.6311 -4.5040 4.8969 36 1 2.8629 -6.4388 4.0176 37 1 4.7089 -8.3645 4.8559 38 1 5.4351 -3.7637 1.8284 39 1 0.5798 -2.1711 -0.7129 40 1 2.2662 -2.7633 -0.8164 41 1 0.5901 -3.1739 -2.8984 42 1 2.2757 -2.6483 -3.2250 43 1 1.0359 -0.9036 -4.3341 44 1 -0.2692 -0.9337 -3.1035 45 1 2.4498 0.3585 -2.9787 46 1 0.9329 0.8369 -2.1667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619476414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:55 Heat of formation + Delta-G solvation = -55.524479 kcal Electronic energy + Delta-G solvation = -27915.134638 eV Core-core repulsion = 24123.995912 eV Total energy + Delta-G solvation = -3791.138726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.75393 -37.61948 -36.59837 -35.53551 -35.21151 -33.77971 -32.51546 -30.03833 -29.76217 -29.15047 -29.02039 -25.70554 -25.43693 -22.68549 -21.83817 -21.24808 -20.96878 -19.70357 -18.92701 -17.88006 -16.98984 -16.56860 -16.03881 -15.87031 -15.73944 -15.14011 -14.75027 -14.65487 -14.23305 -13.94545 -13.50550 -13.32324 -13.30502 -13.06515 -12.74476 -12.54499 -12.46910 -12.03924 -11.91746 -11.65217 -11.52250 -11.45105 -11.39264 -11.33807 -11.30562 -11.22243 -11.16223 -11.00528 -10.83778 -10.79069 -10.71304 -10.58922 -9.75202 -9.64134 -9.35242 -9.04449 -8.39254 -8.00493 -7.63073 -6.84105 -4.52363 1.11893 2.23063 2.65994 3.01865 3.04682 3.08819 3.60966 3.86330 3.90178 4.31948 4.42678 4.50812 4.54901 4.73498 4.77254 4.91172 5.06297 5.18076 5.21394 5.34592 5.38100 5.42468 5.44316 5.50304 5.61896 5.66192 5.74997 5.83264 5.85766 5.96978 6.04712 6.09678 6.10666 6.18388 6.23631 6.67970 6.78715 6.86980 6.87998 6.96935 7.08144 7.24486 7.39926 7.45266 7.73592 7.84256 7.97097 8.43180 8.70972 8.74956 10.11443 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.003740 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.269681 B = 7484.877900 C = 8784.044964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.069 3.931 3 H 0.090 0.910 4 C 0.130 3.870 5 N -1.111 6.111 6 S 2.689 3.311 7 O -0.973 6.973 8 O -0.979 6.979 9 C -0.634 4.634 10 C -0.144 4.144 11 C -0.124 4.124 12 C -0.111 4.111 13 C 0.091 3.909 14 C -0.463 4.463 15 H 0.081 0.919 16 C 0.073 3.927 17 N -0.804 5.804 18 Si 0.914 3.086 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.264 1.264 22 C -0.118 4.118 23 N -0.521 5.521 24 C 0.032 3.968 25 C -0.130 4.130 26 C -0.141 4.141 27 C 0.040 3.960 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.421 0.579 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.125 0.875 37 H 0.283 0.717 38 H 0.112 0.888 39 H 0.055 0.945 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.076 0.924 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.725 9.773 -11.283 17.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.041 4.041 3 H 0.108 0.892 4 C 0.002 3.998 5 N -0.871 5.871 6 S 2.784 3.216 7 O -0.963 6.963 8 O -0.969 6.969 9 C -0.726 4.726 10 C -0.165 4.165 11 C -0.144 4.144 12 C -0.131 4.131 13 C 0.088 3.912 14 C -0.493 4.493 15 H 0.099 0.901 16 C -0.144 4.144 17 N -0.430 5.430 18 Si 0.739 3.261 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.188 1.188 22 C -0.139 4.139 23 N -0.245 5.245 24 C -0.095 4.095 25 C -0.168 4.168 26 C -0.180 4.180 27 C -0.088 4.088 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.257 0.743 34 H 0.123 0.877 35 H 0.116 0.884 36 H 0.143 0.857 37 H 0.094 0.906 38 H 0.130 0.870 39 H 0.073 0.927 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.666 10.171 -10.442 16.958 hybrid contribution -0.792 -1.454 -0.573 1.752 sum -9.458 8.717 -11.015 16.934 Atomic orbital electron populations 1.22479 0.96767 1.02914 1.02583 1.22062 0.92983 0.98744 0.90344 0.89159 1.21259 0.80191 1.00692 0.97634 1.55367 1.15503 1.87494 1.28724 1.01631 0.72692 0.74749 0.72487 1.93537 1.32173 1.87933 1.82702 1.93501 1.81710 1.65860 1.55825 1.29792 1.09490 1.20169 1.13124 1.20110 0.98436 0.96799 1.01154 1.20829 0.99850 0.93164 1.00549 1.21668 0.94314 0.98103 0.99016 1.17688 0.90744 0.91574 0.91224 1.19553 1.29251 0.95946 1.04504 0.90120 1.25903 0.93736 1.00505 0.94250 1.69743 1.36716 1.29230 1.07262 0.86259 0.80275 0.79881 0.79708 1.18867 1.20299 1.18830 1.20815 0.98651 0.91978 1.02445 1.63721 1.57355 1.02190 1.01227 1.23191 0.99931 0.90002 0.96352 1.22701 1.01600 0.96778 0.95685 1.22778 0.99634 0.95547 1.00030 1.22830 0.98573 0.96430 0.90976 0.91676 0.91533 0.91992 0.90141 0.91549 0.74334 0.87663 0.88449 0.85696 0.90643 0.87017 0.92682 0.89402 0.91010 0.90613 0.91030 0.91766 0.90560 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.57 8.56 37.16 0.32 -1.25 16 2 C 0.07 0.69 2.46 -67.71 -0.17 0.53 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 4 C 0.13 1.62 5.41 -4.04 -0.02 1.60 16 5 N -1.11 -16.17 5.91 -10.62 -0.06 -16.24 16 6 S 2.69 50.99 5.74 -107.50 -0.62 50.37 16 7 O -0.97 -21.05 17.27 -57.17 -0.99 -22.04 16 8 O -0.98 -20.15 16.73 -57.17 -0.96 -21.10 16 9 C -0.63 -13.78 5.94 -39.66 -0.24 -14.02 16 10 C -0.14 -3.08 9.53 -39.29 -0.37 -3.45 16 11 C -0.12 -2.76 10.02 -39.66 -0.40 -3.16 16 12 C -0.11 -2.75 8.66 -38.87 -0.34 -3.08 16 13 C 0.09 2.35 5.55 -106.82 -0.59 1.75 16 14 C -0.46 -11.89 9.06 -37.74 -0.34 -12.24 16 15 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 16 C 0.07 1.78 5.24 -17.34 -0.09 1.69 16 17 N -0.80 -20.26 10.88 55.55 0.60 -19.65 16 18 Si 0.91 18.27 29.57 -169.99 -5.03 13.25 16 19 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 22 C -0.12 -2.83 9.26 -38.87 -0.36 -3.19 16 23 N -0.52 -5.39 4.46 -223.29 -0.99 -6.38 16 24 C 0.03 0.35 5.28 -2.30 -0.01 0.34 16 25 C -0.13 -1.18 7.08 -24.60 -0.17 -1.36 16 26 C -0.14 -1.10 6.94 -24.91 -0.17 -1.27 16 27 C 0.04 0.34 6.24 -2.84 -0.02 0.32 16 28 H 0.06 0.57 6.25 -51.93 -0.32 0.24 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.47 6.27 -51.93 -0.33 0.14 16 31 H 0.08 0.99 7.75 -51.93 -0.40 0.58 16 32 H 0.07 0.85 7.31 -51.93 -0.38 0.48 16 33 H 0.42 5.66 8.09 -34.47 -0.28 5.38 16 34 H 0.11 2.03 7.59 -52.48 -0.40 1.63 16 35 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.13 3.15 6.25 -52.49 -0.33 2.83 16 37 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 38 H 0.11 2.60 7.60 -52.49 -0.40 2.21 16 39 H 0.06 0.57 5.47 -51.93 -0.28 0.29 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.44 6.16 -51.93 -0.32 0.12 16 LS Contribution 375.21 15.07 5.65 5.65 Total: -1.00 -30.29 375.21 -12.16 -42.45 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -6.79 Total: 10.48 kcal Atomic # 6 Polarization: -33.81 SS G_CDS: -2.98 Total: -36.79 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: -0.45 Total: -42.27 kcal Atomic # 8 Polarization: -41.20 SS G_CDS: -1.94 Total: -43.14 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.25 kcal Atomic # 16 Polarization: 50.99 SS G_CDS: -0.62 Total: 50.37 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.29 -12.16 -42.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619476414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.074 kcal (2) G-P(sol) polarization free energy of solvation -30.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds