Wall clock time and date at job start Tue Mar 31 2020 21:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46541 * 2 1 4 4 C 1.53004 * 109.47086 * 119.99619 * 2 1 3 5 5 N 1.46493 * 109.46832 * 175.00008 * 4 2 1 6 6 S 1.65607 * 119.99831 * 165.00235 * 5 4 2 7 7 O 1.42094 * 106.40233 * 178.54189 * 6 5 4 8 8 O 1.42104 * 106.39893 * 311.46283 * 6 5 4 9 9 C 1.76201 * 107.21727 * 65.00103 * 6 5 4 10 10 C 1.38659 * 119.87342 * 269.72642 * 9 6 5 11 11 C 1.38614 * 120.50164 * 179.72227 * 10 9 6 12 12 C 1.37648 * 120.24448 * 0.55143 * 11 10 9 13 13 C 1.40691 * 119.74440 * 359.72703 * 12 11 10 14 14 C 1.41396 * 120.24466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00365 * 151.15550 * 14 13 12 16 16 C 1.39945 * 120.00044 * 331.14922 * 14 13 12 17 17 N 1.30830 * 119.99580 * 348.70868 * 16 14 13 18 18 Si 1.86794 * 120.00262 * 168.70456 * 16 14 13 19 19 H 1.48500 * 109.46800 * 60.00419 * 18 16 14 20 20 H 1.48499 * 109.47355 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47218 * 300.00427 * 18 16 14 22 22 C 1.37594 * 119.87670 * 90.00024 * 9 6 5 23 23 N 1.46897 * 109.47253 * 239.99931 * 2 1 3 24 24 C 1.47845 * 110.99939 * 300.92895 * 23 2 1 25 25 C 1.54904 * 104.79877 * 146.36207 * 24 23 2 26 26 C 1.55139 * 101.65241 * 322.93160 * 25 24 23 27 27 C 1.47442 * 110.99974 * 61.76980 * 23 2 1 28 28 H 1.09000 * 109.47157 * 187.02757 * 1 2 3 29 29 H 1.09005 * 109.47381 * 307.02824 * 1 2 3 30 30 H 1.08997 * 109.47137 * 67.02750 * 1 2 3 31 31 H 1.08996 * 109.47282 * 295.00352 * 4 2 1 32 32 H 1.09002 * 109.46917 * 55.00235 * 4 2 1 33 33 H 0.96997 * 120.00524 * 345.00236 * 5 4 2 34 34 H 1.08006 * 119.75151 * 0.02562 * 10 9 6 35 35 H 1.07996 * 119.88117 * 180.25624 * 11 10 9 36 36 H 1.07991 * 120.12425 * 179.74717 * 12 11 10 37 37 H 0.97005 * 119.99648 * 179.97438 * 17 16 14 38 38 H 1.07992 * 120.12648 * 359.97438 * 22 9 6 39 39 H 1.09004 * 110.37365 * 27.52872 * 24 23 2 40 40 H 1.09001 * 110.36906 * 265.19479 * 24 23 2 41 41 H 1.08997 * 110.99159 * 204.83253 * 25 24 23 42 42 H 1.09007 * 110.98637 * 81.01741 * 25 24 23 43 43 H 1.08996 * 110.70592 * 154.03507 * 26 25 24 44 44 H 1.09006 * 110.70015 * 277.26769 * 26 25 24 45 45 H 1.08994 * 109.89335 * 117.33751 * 27 23 2 46 46 H 1.09006 * 109.89103 * 356.14544 * 27 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1906 6 16 4.3574 -1.2175 2.5523 7 8 5.7232 -1.2730 2.1644 8 8 3.8769 -0.3695 3.5864 9 6 3.9009 -2.8588 3.0025 10 6 2.8375 -3.0673 3.8675 11 6 2.4636 -4.3530 4.2257 12 6 3.1533 -5.4380 3.7340 13 6 4.2377 -5.2382 2.8601 14 6 4.9532 -6.3452 2.3483 15 1 5.4349 -6.2778 1.3840 16 6 5.0373 -7.5281 3.0912 17 7 4.6509 -7.5445 4.3410 18 14 5.7013 -9.0837 2.2985 19 1 7.0937 -8.8493 1.8385 20 1 5.6878 -10.1892 3.2900 21 1 4.8512 -9.4492 1.1371 22 6 4.6047 -3.9285 2.4988 23 7 2.0197 -0.6925 -1.1994 24 6 1.5275 -2.0859 -1.2448 25 6 1.3294 -2.3866 -2.7514 26 6 0.8032 -1.0248 -3.2762 27 6 1.5820 0.0002 -2.4252 28 1 -0.3633 -1.0199 0.1257 29 1 -0.3634 0.6189 0.8204 30 1 -0.3633 0.4011 -0.9461 31 1 1.7516 -0.1583 2.1370 32 1 1.6054 -1.7198 1.2952 33 1 3.9646 -0.6667 0.3542 34 1 2.2932 -2.2215 4.2612 35 1 1.6311 -4.5040 4.8969 36 1 2.8629 -6.4388 4.0176 37 1 4.7089 -8.3645 4.8559 38 1 5.4351 -3.7637 1.8284 39 1 0.5798 -2.1711 -0.7129 40 1 2.2662 -2.7633 -0.8164 41 1 0.5901 -3.1739 -2.8984 42 1 2.2757 -2.6483 -3.2250 43 1 1.0359 -0.9036 -4.3341 44 1 -0.2692 -0.9337 -3.1035 45 1 2.4498 0.3585 -2.9787 46 1 0.9329 0.8369 -2.1667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619476414.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:54 Heat of formation + Delta-G solvation = -75.827487 kcal Electronic energy + Delta-G solvation = -27916.015042 eV Core-core repulsion = 24123.995912 eV Total energy + Delta-G solvation = -3792.019130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.53256 -39.43990 -38.23749 -36.87766 -36.53235 -35.62192 -33.46163 -31.88984 -31.57518 -29.91018 -29.73561 -27.33596 -26.63299 -23.68881 -23.45516 -22.79079 -21.92287 -20.64241 -20.40036 -19.56297 -18.36715 -17.76450 -17.54090 -17.09944 -16.85132 -16.56321 -16.49436 -15.98149 -15.27656 -15.15900 -15.00672 -14.70948 -14.31177 -14.29132 -14.05273 -13.71974 -13.60211 -13.25077 -13.20105 -13.15038 -13.04592 -12.99475 -12.84383 -12.79167 -12.67392 -12.58615 -12.21263 -12.10464 -11.98788 -11.93404 -11.69333 -11.54277 -11.41735 -11.35393 -11.15281 -10.34334 -9.82519 -9.50180 -9.15817 -8.67259 -6.46282 -0.44033 0.42259 0.85160 1.37411 1.47142 1.49299 2.17163 2.21096 2.59044 2.83677 3.07861 3.48117 3.52202 3.70672 3.83587 3.97714 4.09010 4.16069 4.31458 4.36977 4.44535 4.45334 4.52614 4.65507 4.67946 4.73998 4.83790 4.85803 4.91374 4.97941 5.00743 5.04101 5.09093 5.10929 5.13261 5.22471 5.23870 5.38619 5.42768 5.44222 5.57081 5.88726 5.96071 6.09999 6.11810 6.18763 6.28544 6.54007 6.82275 6.85902 8.30351 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.003740 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.269681 B = 7484.877900 C = 8784.044964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.073 3.927 3 H 0.100 0.900 4 C 0.120 3.880 5 N -1.094 6.094 6 S 2.718 3.282 7 O -1.000 7.000 8 O -0.988 6.988 9 C -0.640 4.640 10 C -0.140 4.140 11 C -0.125 4.125 12 C -0.131 4.131 13 C 0.062 3.938 14 C -0.500 4.500 15 H 0.078 0.922 16 C 0.034 3.966 17 N -0.834 5.834 18 Si 0.985 3.015 19 H -0.263 1.263 20 H -0.267 1.267 21 H -0.257 1.257 22 C -0.139 4.139 23 N -0.535 5.535 24 C 0.031 3.969 25 C -0.130 4.130 26 C -0.133 4.133 27 C 0.038 3.962 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.428 0.572 34 H 0.133 0.867 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.290 0.710 38 H 0.107 0.893 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.158 10.919 -12.189 19.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.037 4.037 3 H 0.118 0.882 4 C -0.007 4.007 5 N -0.857 5.857 6 S 2.811 3.189 7 O -0.991 6.991 8 O -0.978 6.978 9 C -0.728 4.728 10 C -0.161 4.161 11 C -0.144 4.144 12 C -0.151 4.151 13 C 0.059 3.941 14 C -0.530 4.530 15 H 0.096 0.904 16 C -0.180 4.180 17 N -0.461 5.461 18 Si 0.806 3.194 19 H -0.187 1.187 20 H -0.191 1.191 21 H -0.181 1.181 22 C -0.160 4.160 23 N -0.259 5.259 24 C -0.097 4.097 25 C -0.168 4.168 26 C -0.172 4.172 27 C -0.089 4.089 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.266 0.734 34 H 0.151 0.849 35 H 0.146 0.854 36 H 0.131 0.869 37 H 0.100 0.900 38 H 0.125 0.875 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.112 11.305 -11.339 18.938 hybrid contribution -0.412 -1.661 -0.286 1.735 sum -10.524 9.644 -11.625 18.409 Atomic orbital electron populations 1.22431 0.95105 1.02926 1.03733 1.22045 0.94184 0.98567 0.88917 0.88180 1.21548 0.78408 1.01091 0.99641 1.55004 1.16556 1.86475 1.27698 1.00772 0.71995 0.73328 0.72843 1.93494 1.34420 1.87899 1.83256 1.93484 1.81856 1.65345 1.57139 1.30262 1.08805 1.21407 1.12357 1.20503 0.98011 0.97423 1.00137 1.21165 1.00166 0.92809 1.00282 1.21666 0.95010 0.98454 1.00005 1.18031 0.91475 0.92458 0.92100 1.19820 1.30744 0.97383 1.05067 0.90376 1.26736 0.93596 1.03183 0.94497 1.69797 1.37528 1.30375 1.08373 0.85196 0.79448 0.75805 0.78957 1.18730 1.19130 1.18104 1.20861 0.99401 0.92322 1.03375 1.63657 1.58020 1.02087 1.02146 1.23120 0.99143 0.90022 0.97404 1.22690 1.01513 0.98055 0.94542 1.22746 0.99965 0.93991 1.00464 1.22880 0.98987 0.96819 0.90181 0.92219 0.90526 0.90704 0.89345 0.92073 0.73398 0.84885 0.85449 0.86902 0.89964 0.87498 0.92273 0.92315 0.90418 0.91489 0.89924 0.90823 0.90604 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.54 8.56 71.98 0.62 -1.92 16 2 C 0.07 1.31 2.46 44.92 0.11 1.42 16 3 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 4 C 0.12 2.80 5.41 86.38 0.47 3.27 16 5 N -1.09 -30.78 5.91 -187.50 -1.11 -31.89 16 6 S 2.72 101.43 5.74 -56.49 -0.32 101.11 16 7 O -1.00 -43.39 17.27 -128.00 -2.21 -45.60 16 8 O -0.99 -39.07 16.73 -128.00 -2.14 -41.21 16 9 C -0.64 -27.88 5.94 22.22 0.13 -27.75 16 10 C -0.14 -5.86 9.53 22.46 0.21 -5.65 16 11 C -0.13 -5.50 10.02 22.22 0.22 -5.28 16 12 C -0.13 -6.68 8.66 22.73 0.20 -6.48 16 13 C 0.06 3.34 5.55 -21.29 -0.12 3.22 16 14 C -0.50 -26.81 9.06 23.46 0.21 -26.59 16 15 H 0.08 4.03 7.87 -2.91 -0.02 4.01 16 16 C 0.03 1.68 5.24 85.26 0.45 2.13 16 17 N -0.83 -43.07 10.88 21.83 0.24 -42.83 16 18 Si 0.99 37.90 29.57 68.60 2.03 39.93 16 19 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 20 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 21 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 22 C -0.14 -6.89 9.26 22.73 0.21 -6.68 16 23 N -0.53 -10.25 4.46 -860.36 -3.83 -14.08 16 24 C 0.03 0.64 5.28 86.77 0.46 1.10 16 25 C -0.13 -2.24 7.08 31.98 0.23 -2.02 16 26 C -0.13 -1.76 6.94 31.78 0.22 -1.53 16 27 C 0.04 0.56 6.24 86.65 0.54 1.11 16 28 H 0.06 0.91 6.25 -2.39 -0.01 0.89 16 29 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.07 0.87 6.27 -2.39 -0.01 0.86 16 31 H 0.09 1.96 7.75 -2.39 -0.02 1.94 16 32 H 0.06 1.51 7.31 -2.39 -0.02 1.50 16 33 H 0.43 11.14 8.09 -96.75 -0.78 10.36 16 34 H 0.13 4.79 7.59 -2.91 -0.02 4.77 16 35 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 36 H 0.11 5.92 6.25 -2.92 -0.02 5.90 16 37 H 0.29 13.54 8.30 -92.70 -0.77 12.77 16 38 H 0.11 5.25 7.60 -2.91 -0.02 5.23 16 39 H 0.06 1.17 5.47 -2.38 -0.01 1.16 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.07 0.85 6.16 -2.38 -0.01 0.84 16 Total: -1.00 -66.03 375.21 -2.98 -69.01 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: 0.21 Total: 37.23 kcal Atomic # 6 Polarization: -75.83 SS G_CDS: 4.16 Total: -71.67 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -4.70 Total: -88.80 kcal Atomic # 8 Polarization: -82.46 SS G_CDS: -4.35 Total: -86.81 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 2.03 Total: 39.93 kcal Atomic # 16 Polarization: 101.43 SS G_CDS: -0.32 Total: 101.11 kcal Total: -66.03 -2.98 -69.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619476414.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.815 kcal (2) G-P(sol) polarization free energy of solvation -66.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds