Wall clock time and date at job start Tue Mar 31 2020 21:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47262 * 2 1 4 4 C 1.53004 * 109.46646 * 120.00247 * 2 1 3 5 5 N 1.46500 * 109.46708 * 175.00078 * 4 2 1 6 6 S 1.65604 * 120.00002 * 164.99587 * 5 4 2 7 7 O 1.42102 * 106.40141 * 311.46014 * 6 5 4 8 8 O 1.42093 * 106.40081 * 178.53771 * 6 5 4 9 9 C 1.76204 * 107.21459 * 64.99683 * 6 5 4 10 10 C 1.38653 * 119.87828 * 269.72296 * 9 6 5 11 11 C 1.38613 * 120.50460 * 180.28151 * 10 9 6 12 12 C 1.37636 * 120.24599 * 359.97438 * 11 10 9 13 13 C 1.40703 * 119.74597 * 0.02562 * 12 11 10 14 14 C 1.41392 * 120.24538 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00340 * 150.20964 * 14 13 12 16 16 C 1.39947 * 120.00040 * 330.20724 * 14 13 12 17 17 N 1.30824 * 120.00660 * 161.73627 * 16 14 13 18 18 Si 1.86805 * 119.99658 * 341.73475 * 16 14 13 19 19 H 1.48506 * 109.46935 * 95.41330 * 18 16 14 20 20 H 1.48503 * 109.46912 * 215.40975 * 18 16 14 21 21 H 1.48497 * 109.47560 * 335.41065 * 18 16 14 22 22 C 1.37595 * 119.87237 * 90.00126 * 9 6 5 23 23 N 1.46898 * 109.46818 * 239.99646 * 2 1 3 24 24 C 1.46901 * 111.00593 * 306.04794 * 23 2 1 25 25 C 1.46901 * 111.00138 * 70.00441 * 23 2 1 26 26 C 1.52998 * 117.50049 * 243.74485 * 25 23 2 27 27 C 1.52999 * 117.49810 * 175.08321 * 25 23 2 28 28 H 1.09009 * 109.46969 * 60.00403 * 1 2 3 29 29 H 1.09007 * 109.47633 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47279 * 300.00227 * 1 2 3 31 31 H 1.08988 * 109.47583 * 54.99828 * 4 2 1 32 32 H 1.08996 * 109.46572 * 294.99422 * 4 2 1 33 33 H 0.97005 * 119.99981 * 344.99198 * 5 4 2 34 34 H 1.08002 * 119.74667 * 0.28328 * 10 9 6 35 35 H 1.07996 * 119.87700 * 179.97438 * 11 10 9 36 36 H 1.08002 * 120.12887 * 179.97438 * 12 11 10 37 37 H 0.96987 * 120.00357 * 179.97438 * 17 16 14 38 38 H 1.08005 * 120.13116 * 359.70095 * 22 9 6 39 39 H 1.09001 * 109.47050 * 59.99664 * 24 23 2 40 40 H 1.08994 * 109.47404 * 180.02562 * 24 23 2 41 41 H 1.09001 * 109.46669 * 300.00381 * 24 23 2 42 42 H 1.09006 * 115.54904 * 29.41116 * 25 23 2 43 43 H 1.09005 * 117.49760 * 359.97438 * 26 25 23 44 44 H 1.09001 * 117.50272 * 145.01977 * 26 25 23 45 45 H 1.09009 * 117.49394 * 214.97693 * 27 25 23 46 46 H 1.08991 * 117.50260 * 359.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1906 6 16 4.3573 -1.2177 2.5523 7 8 3.8769 -0.3697 3.5864 8 8 5.7231 -1.2733 2.1644 9 6 3.9007 -2.8590 3.0025 10 6 2.8373 -3.0674 3.8674 11 6 2.4706 -4.3527 4.2348 12 6 3.1600 -5.4377 3.7428 13 6 4.2408 -5.2382 2.8643 14 6 4.9560 -6.3451 2.3522 15 1 5.4210 -6.2844 1.3793 16 6 5.0614 -7.5196 3.1059 17 7 5.3948 -8.6428 2.5239 18 14 4.7261 -7.4833 4.9433 19 1 3.3172 -7.8780 5.1972 20 1 5.6377 -8.4323 5.6316 21 1 4.9569 -6.1110 5.4617 22 6 4.6044 -3.9287 2.4987 23 7 2.0196 -0.6926 -1.1994 24 6 1.4342 -2.0355 -1.3078 25 6 1.7529 0.0971 -2.4091 26 6 0.8025 -0.5012 -3.4481 27 6 2.3047 -0.4324 -3.7342 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6053 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1369 33 1 3.9645 -0.6669 0.3541 34 1 2.2905 -2.2219 4.2580 35 1 1.6409 -4.5034 4.9095 36 1 2.8729 -6.4383 4.0306 37 1 5.4682 -9.4566 3.0464 38 1 5.4322 -3.7641 1.8248 39 1 0.3490 -1.9550 -1.3693 40 1 1.8139 -2.5261 -2.2040 41 1 1.7058 -2.6221 -0.4301 42 1 1.7299 1.1779 -2.2693 43 1 0.3754 -1.4810 -3.2342 44 1 0.1545 0.1859 -3.9922 45 1 2.6443 0.3002 -4.4665 46 1 2.8659 -1.3663 -3.7085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619481658.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:13 Heat of formation + Delta-G solvation = -19.959548 kcal Electronic energy + Delta-G solvation = -27799.342574 eV Core-core repulsion = 24009.746060 eV Total energy + Delta-G solvation = -3789.596515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.64265 -37.91691 -36.74655 -36.21097 -35.33322 -33.78382 -33.32727 -30.72289 -30.18825 -30.14817 -26.74247 -25.81162 -25.37202 -22.53691 -22.38453 -21.61027 -20.89706 -19.65472 -19.08812 -17.99865 -17.16086 -16.97912 -16.34187 -16.23481 -15.36691 -15.24408 -15.06759 -14.84154 -14.43449 -14.02868 -13.80166 -13.47298 -13.18591 -13.00615 -12.87027 -12.61818 -12.35301 -12.20952 -12.19451 -11.85988 -11.83078 -11.67387 -11.56904 -11.51902 -11.42831 -11.37246 -11.03130 -10.99975 -10.85739 -10.79340 -10.46512 -10.33658 -10.00807 -9.77369 -9.37510 -9.10451 -8.30782 -8.26983 -7.87849 -7.08940 -4.64167 0.98249 1.92294 2.41454 2.98847 3.11376 3.20698 3.37054 3.55550 3.83758 3.85587 4.14503 4.35677 4.51440 4.67199 4.71658 4.77057 4.90680 4.99945 5.09086 5.13024 5.16400 5.34307 5.38837 5.42319 5.50962 5.54072 5.62890 5.75231 5.79572 5.82134 5.92545 5.94404 5.99528 6.01327 6.12829 6.20135 6.46463 6.59457 6.84699 6.86650 6.90553 7.07618 7.20033 7.35456 7.39660 7.62031 7.77658 8.18241 8.42698 8.61524 9.92993 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013284 B = 0.003532 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.335220 B = 7926.010310 C = 8784.063361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.076 3.924 3 H 0.091 0.909 4 C 0.128 3.872 5 N -1.110 6.110 6 S 2.690 3.310 7 O -0.975 6.975 8 O -0.969 6.969 9 C -0.625 4.625 10 C -0.159 4.159 11 C -0.093 4.093 12 C -0.199 4.199 13 C 0.074 3.926 14 C -0.443 4.443 15 H 0.095 0.905 16 C 0.084 3.916 17 N -0.801 5.801 18 Si 0.906 3.094 19 H -0.269 1.269 20 H -0.286 1.286 21 H -0.243 1.243 22 C -0.100 4.100 23 N -0.501 5.501 24 C 0.009 3.991 25 C 0.024 3.976 26 C -0.220 4.220 27 C -0.171 4.171 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.422 0.578 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.287 0.713 38 H 0.119 0.881 39 H 0.037 0.963 40 H 0.069 0.931 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.431 13.487 -7.564 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.034 4.034 3 H 0.109 0.891 4 C 0.001 3.999 5 N -0.870 5.870 6 S 2.784 3.216 7 O -0.965 6.965 8 O -0.960 6.960 9 C -0.716 4.716 10 C -0.180 4.180 11 C -0.112 4.112 12 C -0.219 4.219 13 C 0.070 3.930 14 C -0.471 4.471 15 H 0.113 0.887 16 C -0.135 4.135 17 N -0.424 5.424 18 Si 0.732 3.268 19 H -0.195 1.195 20 H -0.213 1.213 21 H -0.166 1.166 22 C -0.121 4.121 23 N -0.222 5.222 24 C -0.138 4.138 25 C -0.085 4.085 26 C -0.259 4.259 27 C -0.209 4.209 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.258 0.742 34 H 0.129 0.871 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.137 0.863 39 H 0.056 0.944 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.134 0.866 43 H 0.118 0.882 44 H 0.108 0.892 45 H 0.113 0.887 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.303 13.677 -6.944 17.939 hybrid contribution -1.224 -0.949 0.199 1.561 sum -10.526 12.728 -6.746 17.841 Atomic orbital electron populations 1.22440 0.96364 1.02962 1.02671 1.21951 0.93295 0.98536 0.89603 0.89073 1.21301 0.80072 1.00875 0.97681 1.55350 1.15587 1.87347 1.28743 1.01663 0.72747 0.74586 0.72570 1.93512 1.81696 1.65516 1.55821 1.93553 1.32005 1.87783 1.82643 1.30000 1.08736 1.20645 1.12172 1.20055 0.99052 0.96683 1.02236 1.20693 0.98721 0.92953 0.98826 1.21295 0.98395 0.97406 1.04776 1.17791 0.91356 0.92657 0.91246 1.19520 1.28520 0.94331 1.04762 0.88682 1.26151 0.91621 0.94097 1.01680 1.69673 1.33923 0.99869 1.38932 0.86383 0.78272 0.80304 0.81868 1.19466 1.21338 1.16628 1.20856 0.98319 0.91511 1.01378 1.61951 1.57057 1.02539 1.00681 1.22634 0.97547 0.90030 1.03593 1.22607 1.02668 0.96965 0.86259 1.23561 0.93538 1.03595 1.05211 1.23075 0.95779 1.03653 0.98415 0.92054 0.91644 0.91548 0.91400 0.89955 0.74183 0.87140 0.88004 0.87696 0.90199 0.86257 0.94418 0.91240 0.90152 0.86643 0.88195 0.89158 0.88669 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 8.49 37.16 0.32 -1.13 16 2 C 0.08 0.71 2.51 -67.71 -0.17 0.54 16 3 H 0.09 0.80 7.96 -51.93 -0.41 0.38 16 4 C 0.13 1.48 5.39 -4.04 -0.02 1.46 16 5 N -1.11 -15.16 5.91 -10.62 -0.06 -15.23 16 6 S 2.69 48.00 5.74 -107.50 -0.62 47.39 16 7 O -0.98 -18.87 16.73 -57.17 -0.96 -19.83 16 8 O -0.97 -19.94 17.27 -57.17 -0.99 -20.93 16 9 C -0.62 -12.77 5.94 -39.66 -0.24 -13.00 16 10 C -0.16 -3.17 9.53 -39.29 -0.37 -3.54 16 11 C -0.09 -1.90 10.02 -39.66 -0.40 -2.30 16 12 C -0.20 -4.58 7.18 -38.87 -0.28 -4.86 16 13 C 0.07 1.81 5.10 -106.82 -0.55 1.26 16 14 C -0.44 -11.61 9.57 -37.74 -0.36 -11.97 16 15 H 0.10 2.59 8.06 -52.49 -0.42 2.16 16 16 C 0.08 2.15 5.40 -17.34 -0.09 2.05 16 17 N -0.80 -20.67 13.93 55.55 0.77 -19.90 16 18 Si 0.91 20.16 24.52 -169.99 -4.17 15.99 16 19 H -0.27 -5.71 6.71 56.52 0.38 -5.33 16 20 H -0.29 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.24 -5.61 6.86 56.52 0.39 -5.22 16 22 C -0.10 -2.28 9.26 -38.87 -0.36 -2.64 16 23 N -0.50 -4.92 4.18 -226.91 -0.95 -5.87 16 24 C 0.01 0.10 7.41 60.07 0.45 0.54 16 25 C 0.02 0.21 5.20 -67.71 -0.35 -0.15 16 26 C -0.22 -1.70 9.51 -26.69 -0.25 -1.95 16 27 C -0.17 -1.42 9.99 -26.69 -0.27 -1.68 16 28 H 0.06 0.45 7.52 -51.92 -0.39 0.06 16 29 H 0.06 0.54 6.33 -51.93 -0.33 0.21 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.80 6.80 -51.94 -0.35 0.45 16 32 H 0.08 0.92 7.75 -51.93 -0.40 0.52 16 33 H 0.42 5.35 8.09 -34.48 -0.28 5.07 16 34 H 0.11 1.95 7.60 -52.49 -0.40 1.55 16 35 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.11 2.38 4.73 -52.49 -0.25 2.13 16 37 H 0.29 6.70 8.30 -40.82 -0.34 6.37 16 38 H 0.12 2.65 7.61 -52.48 -0.40 2.25 16 39 H 0.04 0.34 5.30 -51.93 -0.28 0.06 16 40 H 0.07 0.70 6.63 -51.93 -0.34 0.35 16 41 H 0.08 0.94 6.58 -51.93 -0.34 0.59 16 42 H 0.12 0.87 7.93 -51.93 -0.41 0.46 16 43 H 0.10 0.81 5.90 -51.93 -0.31 0.51 16 44 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 46 H 0.10 0.91 7.56 -51.93 -0.39 0.52 16 LS Contribution 372.56 15.07 5.61 5.61 Total: -1.00 -30.08 372.56 -10.87 -40.95 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.57 Total: 9.19 kcal Atomic # 6 Polarization: -34.43 SS G_CDS: -2.95 Total: -37.38 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: -0.24 Total: -40.99 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -1.94 Total: -40.76 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.17 Total: 15.99 kcal Atomic # 16 Polarization: 48.00 SS G_CDS: -0.62 Total: 47.39 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.08 -10.87 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619481658.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.994 kcal (2) G-P(sol) polarization free energy of solvation -30.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds