Wall clock time and date at job start Tue Mar 31 2020 21:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 109.47262 * 2 1 4 4 C 1.53004 * 109.46646 * 120.00247 * 2 1 3 5 5 N 1.46500 * 109.46708 * 175.00078 * 4 2 1 6 6 S 1.65604 * 120.00002 * 164.99587 * 5 4 2 7 7 O 1.42102 * 106.40141 * 311.46014 * 6 5 4 8 8 O 1.42093 * 106.40081 * 178.53771 * 6 5 4 9 9 C 1.76204 * 107.21459 * 64.99683 * 6 5 4 10 10 C 1.38653 * 119.87828 * 269.72296 * 9 6 5 11 11 C 1.38613 * 120.50460 * 180.28151 * 10 9 6 12 12 C 1.37636 * 120.24599 * 359.97438 * 11 10 9 13 13 C 1.40703 * 119.74597 * 0.02562 * 12 11 10 14 14 C 1.41392 * 120.24538 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00340 * 150.20964 * 14 13 12 16 16 C 1.39947 * 120.00040 * 330.20724 * 14 13 12 17 17 N 1.30824 * 120.00660 * 161.73627 * 16 14 13 18 18 Si 1.86805 * 119.99658 * 341.73475 * 16 14 13 19 19 H 1.48506 * 109.46935 * 95.41330 * 18 16 14 20 20 H 1.48503 * 109.46912 * 215.40975 * 18 16 14 21 21 H 1.48497 * 109.47560 * 335.41065 * 18 16 14 22 22 C 1.37595 * 119.87237 * 90.00126 * 9 6 5 23 23 N 1.46898 * 109.46818 * 239.99646 * 2 1 3 24 24 C 1.46901 * 111.00593 * 306.04794 * 23 2 1 25 25 C 1.46901 * 111.00138 * 70.00441 * 23 2 1 26 26 C 1.52998 * 117.50049 * 243.74485 * 25 23 2 27 27 C 1.52999 * 117.49810 * 175.08321 * 25 23 2 28 28 H 1.09009 * 109.46969 * 60.00403 * 1 2 3 29 29 H 1.09007 * 109.47633 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47279 * 300.00227 * 1 2 3 31 31 H 1.08988 * 109.47583 * 54.99828 * 4 2 1 32 32 H 1.08996 * 109.46572 * 294.99422 * 4 2 1 33 33 H 0.97005 * 119.99981 * 344.99198 * 5 4 2 34 34 H 1.08002 * 119.74667 * 0.28328 * 10 9 6 35 35 H 1.07996 * 119.87700 * 179.97438 * 11 10 9 36 36 H 1.08002 * 120.12887 * 179.97438 * 12 11 10 37 37 H 0.96987 * 120.00357 * 179.97438 * 17 16 14 38 38 H 1.08005 * 120.13116 * 359.70095 * 22 9 6 39 39 H 1.09001 * 109.47050 * 59.99664 * 24 23 2 40 40 H 1.08994 * 109.47404 * 180.02562 * 24 23 2 41 41 H 1.09001 * 109.46669 * 300.00381 * 24 23 2 42 42 H 1.09006 * 115.54904 * 29.41116 * 25 23 2 43 43 H 1.09005 * 117.49760 * 359.97438 * 26 25 23 44 44 H 1.09001 * 117.50272 * 145.01977 * 26 25 23 45 45 H 1.09009 * 117.49394 * 214.97693 * 27 25 23 46 46 H 1.08991 * 117.50260 * 359.97438 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1906 6 16 4.3573 -1.2177 2.5523 7 8 3.8769 -0.3697 3.5864 8 8 5.7231 -1.2733 2.1644 9 6 3.9007 -2.8590 3.0025 10 6 2.8373 -3.0674 3.8674 11 6 2.4706 -4.3527 4.2348 12 6 3.1600 -5.4377 3.7428 13 6 4.2408 -5.2382 2.8643 14 6 4.9560 -6.3451 2.3522 15 1 5.4210 -6.2844 1.3793 16 6 5.0614 -7.5196 3.1059 17 7 5.3948 -8.6428 2.5239 18 14 4.7261 -7.4833 4.9433 19 1 3.3172 -7.8780 5.1972 20 1 5.6377 -8.4323 5.6316 21 1 4.9569 -6.1110 5.4617 22 6 4.6044 -3.9287 2.4987 23 7 2.0196 -0.6926 -1.1994 24 6 1.4342 -2.0355 -1.3078 25 6 1.7529 0.0971 -2.4091 26 6 0.8025 -0.5012 -3.4481 27 6 2.3047 -0.4324 -3.7342 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.6053 -1.7198 1.2952 32 1 1.7516 -0.1583 2.1369 33 1 3.9645 -0.6669 0.3541 34 1 2.2905 -2.2219 4.2580 35 1 1.6409 -4.5034 4.9095 36 1 2.8729 -6.4383 4.0306 37 1 5.4682 -9.4566 3.0464 38 1 5.4322 -3.7641 1.8248 39 1 0.3490 -1.9550 -1.3693 40 1 1.8139 -2.5261 -2.2040 41 1 1.7058 -2.6221 -0.4301 42 1 1.7299 1.1779 -2.2693 43 1 0.3754 -1.4810 -3.2342 44 1 0.1545 0.1859 -3.9922 45 1 2.6443 0.3002 -4.4665 46 1 2.8659 -1.3663 -3.7085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619481658.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:13 Heat of formation + Delta-G solvation = -41.249270 kcal Electronic energy + Delta-G solvation = -27800.265766 eV Core-core repulsion = 24009.746060 eV Total energy + Delta-G solvation = -3790.519706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.37059 -39.67363 -38.26234 -37.07737 -36.88576 -35.63619 -34.28330 -32.53227 -31.87406 -30.92651 -27.49469 -27.24748 -26.67984 -24.08545 -23.16177 -22.70056 -22.33715 -20.63748 -20.35688 -19.62718 -18.37116 -18.06617 -17.88203 -17.44314 -16.97839 -16.64355 -16.27337 -15.88140 -15.67726 -15.38672 -14.84220 -14.82306 -14.68029 -14.33193 -14.04329 -13.79787 -13.57218 -13.46684 -13.36078 -13.24399 -13.11845 -13.04009 -12.88516 -12.86287 -12.67333 -12.54272 -12.33285 -12.14898 -12.00949 -11.78654 -11.77919 -11.55480 -11.53120 -11.12418 -11.07078 -10.34671 -9.98682 -9.67912 -9.01905 -8.97054 -6.59589 -0.48385 0.19801 0.65684 1.20022 1.35473 1.42549 2.03599 2.13275 2.43021 2.73328 2.80374 3.15469 3.31210 3.46154 3.80724 3.98677 4.05729 4.14595 4.18591 4.23787 4.33993 4.35347 4.36964 4.45252 4.51975 4.62683 4.72511 4.76621 4.76936 4.83423 4.85012 4.95696 5.06431 5.07028 5.08232 5.14236 5.19793 5.29866 5.35102 5.37644 5.44675 5.63590 5.76647 5.99890 6.09116 6.18607 6.24271 6.27066 6.58833 6.69576 8.11368 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013284 B = 0.003532 C = 0.003187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.335220 B = 7926.010310 C = 8784.063361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.080 3.920 3 H 0.103 0.897 4 C 0.117 3.883 5 N -1.095 6.095 6 S 2.717 3.283 7 O -0.982 6.982 8 O -0.999 6.999 9 C -0.631 4.631 10 C -0.141 4.141 11 C -0.095 4.095 12 C -0.205 4.205 13 C 0.055 3.945 14 C -0.485 4.485 15 H 0.060 0.940 16 C 0.050 3.950 17 N -0.842 5.842 18 Si 0.956 3.044 19 H -0.247 1.247 20 H -0.274 1.274 21 H -0.256 1.256 22 C -0.121 4.121 23 N -0.515 5.515 24 C 0.013 3.987 25 C 0.021 3.979 26 C -0.211 4.211 27 C -0.179 4.179 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.428 0.572 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.108 0.892 37 H 0.296 0.704 38 H 0.110 0.890 39 H 0.050 0.950 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.130 0.870 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.107 0.893 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 15.983 -6.343 21.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.030 4.030 3 H 0.121 0.879 4 C -0.009 4.009 5 N -0.858 5.858 6 S 2.809 3.191 7 O -0.972 6.972 8 O -0.989 6.989 9 C -0.719 4.719 10 C -0.161 4.161 11 C -0.114 4.114 12 C -0.225 4.225 13 C 0.052 3.948 14 C -0.514 4.514 15 H 0.078 0.922 16 C -0.166 4.166 17 N -0.468 5.468 18 Si 0.778 3.222 19 H -0.172 1.172 20 H -0.201 1.201 21 H -0.180 1.180 22 C -0.142 4.142 23 N -0.236 5.236 24 C -0.135 4.135 25 C -0.088 4.088 26 C -0.249 4.249 27 C -0.217 4.217 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.112 0.888 33 H 0.266 0.734 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.126 0.874 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.148 0.852 43 H 0.112 0.888 44 H 0.122 0.878 45 H 0.125 0.875 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.996 16.145 -5.724 20.912 hybrid contribution -0.501 -1.471 -0.249 1.574 sum -12.497 14.673 -5.973 20.178 Atomic orbital electron populations 1.22386 0.94868 1.02936 1.03675 1.21945 0.94352 0.98487 0.88182 0.87930 1.21614 0.78254 1.01441 0.99629 1.55030 1.16683 1.86354 1.27755 1.00873 0.72041 0.73287 0.72931 1.93500 1.81787 1.64916 1.56971 1.93513 1.34402 1.87780 1.83216 1.30469 1.08258 1.21641 1.11569 1.20619 0.97752 0.97774 0.99949 1.21165 0.99255 0.92227 0.98749 1.21493 0.98024 0.98666 1.04268 1.17927 0.91945 0.92738 0.92178 1.19482 1.31125 0.96318 1.04463 0.92216 1.26784 0.91325 0.93438 1.05004 1.69698 1.36105 1.00563 1.40423 0.85633 0.79523 0.79644 0.77357 1.17179 1.20074 1.18011 1.20862 0.99114 0.91903 1.02335 1.61906 1.57581 1.02562 1.01587 1.22548 0.98334 0.90239 1.02359 1.22696 1.03032 0.97449 0.85616 1.23555 0.93235 1.03510 1.04646 1.23102 0.96311 1.03354 0.98971 0.91146 0.92165 0.90462 0.91662 0.88786 0.73379 0.83760 0.83834 0.87418 0.89345 0.87182 0.93145 0.91843 0.92067 0.85216 0.88779 0.87771 0.87511 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 8.49 71.98 0.61 -1.63 16 2 C 0.08 1.27 2.51 44.92 0.11 1.39 16 3 H 0.10 1.44 7.96 -2.39 -0.02 1.42 16 4 C 0.12 2.41 5.39 86.38 0.47 2.87 16 5 N -1.09 -28.04 5.91 -187.50 -1.11 -29.15 16 6 S 2.72 92.87 5.74 -56.49 -0.32 92.55 16 7 O -0.98 -35.15 16.73 -128.00 -2.14 -37.30 16 8 O -1.00 -40.85 17.27 -128.00 -2.21 -43.06 16 9 C -0.63 -25.02 5.94 22.22 0.13 -24.89 16 10 C -0.14 -5.12 9.53 22.46 0.21 -4.91 16 11 C -0.10 -3.59 10.02 22.22 0.22 -3.37 16 12 C -0.21 -9.21 7.18 22.73 0.16 -9.04 16 13 C 0.06 2.80 5.10 -21.29 -0.11 2.69 16 14 C -0.48 -26.97 9.57 23.46 0.22 -26.74 16 15 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 16 C 0.05 2.64 5.40 85.26 0.46 3.10 16 17 N -0.84 -45.43 13.93 21.83 0.30 -45.13 16 18 Si 0.96 41.50 24.52 68.60 1.68 43.18 16 19 H -0.25 -9.77 6.71 99.48 0.67 -9.11 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 21 H -0.26 -11.53 6.86 99.48 0.68 -10.85 16 22 C -0.12 -5.67 9.26 22.73 0.21 -5.46 16 23 N -0.51 -9.27 4.18 -871.80 -3.65 -12.92 16 24 C 0.01 0.25 7.41 127.69 0.95 1.20 16 25 C 0.02 0.31 5.20 44.91 0.23 0.55 16 26 C -0.21 -2.84 9.51 30.62 0.29 -2.55 16 27 C -0.18 -2.76 9.99 30.62 0.31 -2.45 16 28 H 0.07 0.78 7.52 -2.38 -0.02 0.76 16 29 H 0.06 0.83 6.33 -2.38 -0.02 0.81 16 30 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.07 1.40 6.80 -2.39 -0.02 1.38 16 32 H 0.09 1.75 7.75 -2.39 -0.02 1.74 16 33 H 0.43 10.31 8.09 -96.74 -0.78 9.53 16 34 H 0.14 4.34 7.60 -2.91 -0.02 4.32 16 35 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 36 H 0.11 4.73 4.73 -2.91 -0.01 4.72 16 37 H 0.30 14.27 8.30 -92.72 -0.77 13.50 16 38 H 0.11 5.20 7.61 -2.91 -0.02 5.18 16 39 H 0.05 0.84 5.30 -2.39 -0.01 0.82 16 40 H 0.06 1.29 6.63 -2.39 -0.02 1.27 16 41 H 0.06 1.42 6.58 -2.39 -0.02 1.40 16 42 H 0.13 1.56 7.93 -2.38 -0.02 1.54 16 43 H 0.09 1.39 5.90 -2.38 -0.01 1.38 16 44 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 46 H 0.08 1.53 7.56 -2.39 -0.02 1.51 16 Total: -1.00 -66.48 372.56 -2.80 -69.28 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.16 Total: 31.80 kcal Atomic # 6 Polarization: -73.75 SS G_CDS: 4.48 Total: -69.26 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -4.45 Total: -87.19 kcal Atomic # 8 Polarization: -76.00 SS G_CDS: -4.35 Total: -80.35 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 1.68 Total: 43.18 kcal Atomic # 16 Polarization: 92.87 SS G_CDS: -0.32 Total: 92.55 kcal Total: -66.48 -2.80 -69.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619481658.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.030 kcal (2) G-P(sol) polarization free energy of solvation -66.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds