Wall clock time and date at job start Tue Mar 31 2020 21:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46902 * 109.46970 * 2 1 4 4 C 1.46898 * 111.00189 * 289.46991 * 3 2 1 5 5 C 1.53237 * 109.34314 * 172.74806 * 4 3 2 6 6 N 1.47077 * 108.52199 * 53.82646 * 5 4 3 7 7 S 1.65602 * 120.88308 * 128.82149 * 6 5 4 8 8 O 1.42105 * 106.39704 * 336.45881 * 7 6 5 9 9 O 1.42097 * 106.40230 * 203.54037 * 7 6 5 10 10 C 1.76200 * 107.21941 * 89.99483 * 7 6 5 11 11 C 1.38655 * 119.88191 * 269.98394 * 10 7 6 12 12 C 1.38606 * 120.50172 * 180.02562 * 11 10 7 13 13 C 1.37638 * 120.25257 * 359.66723 * 12 11 10 14 14 C 1.40698 * 119.74020 * 0.62968 * 13 12 11 15 15 C 1.41393 * 120.24614 * 179.67394 * 14 13 12 16 16 H 1.07995 * 120.00494 * 154.78454 * 15 14 13 17 17 C 1.39951 * 119.99656 * 334.78789 * 15 14 13 18 18 N 1.30820 * 120.00081 * 329.44859 * 17 15 14 19 19 Si 1.86805 * 119.99884 * 149.44993 * 17 15 14 20 20 H 1.48500 * 109.46946 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47086 * 299.99716 * 19 17 15 22 22 H 1.48495 * 109.47048 * 59.99655 * 19 17 15 23 23 C 1.37600 * 119.87023 * 90.00243 * 10 7 6 24 24 C 1.47077 * 118.23946 * 309.08708 * 6 5 4 25 25 C 1.46898 * 111.00106 * 165.16415 * 3 2 1 26 26 H 1.09003 * 109.49218 * 67.29868 * 25 3 2 27 27 C 1.52994 * 109.49445 * 307.21541 * 25 3 2 28 28 H 1.09004 * 109.47399 * 59.99744 * 1 2 3 29 29 H 1.08997 * 109.46996 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47318 * 300.00052 * 1 2 3 31 31 H 1.08999 * 109.47410 * 240.00730 * 2 1 3 32 32 H 1.08997 * 109.47209 * 119.99857 * 2 1 3 33 33 H 1.09001 * 109.49421 * 52.78654 * 4 3 2 34 34 H 1.09007 * 109.51372 * 292.71878 * 4 3 2 35 35 H 1.09002 * 109.62555 * 294.11758 * 5 4 3 36 36 H 1.08995 * 109.79452 * 173.63700 * 5 4 3 37 37 H 1.08002 * 119.74695 * 359.97438 * 11 10 7 38 38 H 1.08003 * 119.87026 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.13395 * 180.31688 * 13 12 11 40 40 H 0.97002 * 119.99838 * 353.59421 * 18 17 15 41 41 H 1.08004 * 120.13168 * 359.97438 * 23 10 7 42 42 H 1.09000 * 109.63050 * 170.61662 * 24 6 5 43 43 H 1.08997 * 109.62963 * 291.20729 * 24 6 5 44 44 H 1.08999 * 109.47305 * 66.84506 * 27 25 3 45 45 H 1.09001 * 109.47426 * 186.84191 * 27 25 3 46 46 H 1.08999 * 109.47081 * 306.84358 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7641 2.0338 -1.2930 5 6 2.1214 3.5206 -1.1942 6 7 3.5024 3.6375 -0.7019 7 16 4.6127 4.5726 -1.4989 8 8 4.1597 4.6763 -2.8418 9 8 5.8920 4.0638 -1.1473 10 6 4.5166 6.1936 -0.8149 11 6 3.6459 7.1237 -1.3620 12 6 3.5603 8.4026 -0.8345 13 6 4.3357 8.7609 0.2448 14 6 5.2273 7.8272 0.8042 15 6 6.0339 8.1860 1.9087 16 1 6.3956 7.4243 2.5834 17 6 6.3635 9.5284 2.1277 18 7 6.4793 10.3473 1.1140 19 14 6.6379 10.1510 3.8674 20 1 6.9720 11.5974 3.8286 21 1 5.4020 9.9502 4.6658 22 1 7.7573 9.4004 4.4909 23 6 5.3062 6.5317 0.2601 24 6 3.8728 2.8973 0.5139 25 6 3.4449 1.4395 0.3511 26 1 4.0328 0.9773 -0.4419 27 6 3.6765 0.6880 1.6635 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.7101 1.9293 -1.5504 34 1 2.3750 1.5633 -2.0634 35 1 1.4420 4.0151 -0.4999 36 1 2.0425 3.9853 -2.1770 37 1 3.0304 6.8499 -2.2062 38 1 2.8790 9.1192 -1.2690 39 1 4.2637 9.7563 0.6575 40 1 6.4290 10.0066 0.2072 41 1 5.9836 5.8057 0.6849 42 1 4.9521 2.9467 0.6582 43 1 3.3650 3.3306 1.3755 44 1 3.4869 -0.3746 1.5121 45 1 4.7077 0.8305 1.9867 46 1 3.0001 1.0726 2.4267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619493494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:42 Heat of formation + Delta-G solvation = -54.067451 kcal Electronic energy + Delta-G solvation = -28058.983094 eV Core-core repulsion = 24267.907550 eV Total energy + Delta-G solvation = -3791.075544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.45874 -37.83250 -36.82957 -35.42224 -35.19577 -34.07203 -32.94993 -30.61145 -30.06372 -29.72943 -27.54887 -25.96160 -25.27135 -22.69022 -22.12455 -21.86917 -21.18619 -20.13568 -18.86697 -18.15199 -17.30815 -16.28491 -16.15682 -15.75186 -15.23064 -14.99753 -14.69522 -14.61844 -14.45733 -14.20901 -13.96411 -13.65553 -13.42398 -12.70635 -12.65069 -12.58926 -12.31514 -12.24893 -12.15839 -12.02912 -11.79308 -11.68212 -11.61939 -11.54676 -11.35575 -11.27725 -11.13222 -11.06863 -10.73683 -10.71628 -10.61211 -10.48606 -9.81896 -9.74906 -9.11620 -8.95784 -8.40351 -8.22916 -7.89807 -7.38686 -4.60964 0.87074 2.04401 2.59127 3.07935 3.14232 3.28844 3.33878 3.67395 3.91115 4.17760 4.32196 4.60860 4.63220 4.72090 4.93669 4.97765 5.09336 5.19834 5.20905 5.26342 5.29222 5.30377 5.45096 5.46394 5.56255 5.67252 5.71132 5.79918 5.89012 5.91694 5.93814 6.00508 6.08976 6.14269 6.14669 6.45862 6.54079 6.60055 6.84167 6.92853 6.94591 7.04298 7.26161 7.47164 7.55392 7.62856 7.89709 8.02442 8.51993 8.65940 9.85556 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.003298 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.102274 B = 8486.687918 C = 9202.708095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 N -0.531 5.531 4 C 0.044 3.956 5 C 0.124 3.876 6 N -1.002 6.002 7 S 2.686 3.314 8 O -0.972 6.972 9 O -0.969 6.969 10 C -0.618 4.618 11 C -0.167 4.167 12 C -0.098 4.098 13 C -0.178 4.178 14 C 0.080 3.920 15 C -0.523 4.523 16 H 0.081 0.919 17 C 0.042 3.958 18 N -0.784 5.784 19 Si 1.063 2.937 20 H -0.273 1.273 21 H -0.273 1.273 22 H -0.274 1.274 23 C -0.126 4.126 24 C 0.129 3.871 25 C 0.071 3.929 26 H 0.045 0.955 27 C -0.148 4.148 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.031 0.969 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.299 0.701 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.219 -15.478 0.473 18.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 N -0.257 5.257 4 C -0.086 4.086 5 C -0.001 4.001 6 N -0.839 5.839 7 S 2.784 3.216 8 O -0.962 6.962 9 O -0.959 6.959 10 C -0.710 4.710 11 C -0.188 4.188 12 C -0.117 4.117 13 C -0.198 4.198 14 C 0.076 3.924 15 C -0.550 4.550 16 H 0.099 0.901 17 C -0.181 4.181 18 N -0.406 5.406 19 Si 0.886 3.114 20 H -0.198 1.198 21 H -0.198 1.198 22 H -0.199 1.199 23 C -0.147 4.147 24 C 0.003 3.997 25 C -0.039 4.039 26 H 0.063 0.937 27 C -0.206 4.206 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.056 0.944 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.117 0.883 39 H 0.127 0.873 40 H 0.112 0.888 41 H 0.129 0.871 42 H 0.115 0.885 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.577 -14.116 0.966 16.546 hybrid contribution -0.184 -1.173 -1.176 1.671 sum -8.762 -15.289 -0.210 17.622 Atomic orbital electron populations 1.21778 0.94890 1.01234 1.02551 1.22198 0.96122 0.89060 1.01077 1.61958 1.16662 1.16604 1.30508 1.22472 1.01448 0.94806 0.89838 1.21494 0.82184 0.95929 1.00521 1.57812 1.23552 1.62213 1.40282 1.01809 0.72495 0.74069 0.73246 1.93496 1.81829 1.87443 1.33467 1.93514 1.38346 1.79703 1.84345 1.29874 1.09452 1.20574 1.11086 1.19977 1.02434 0.94329 1.02029 1.20711 0.98892 0.95407 0.96702 1.21376 0.98711 1.00430 0.99280 1.17704 0.91608 0.91366 0.91691 1.20570 1.28932 0.95983 1.09562 0.90063 1.27099 0.91602 0.93252 1.06156 1.70477 1.27744 1.39880 1.02462 0.83666 0.78029 0.76985 0.72698 1.19765 1.19810 1.19880 1.20713 0.99651 0.98751 0.95623 1.21476 1.01215 0.89989 0.87031 1.21864 0.88185 0.96260 0.97620 0.93691 1.21904 1.02540 0.99560 0.96603 0.92751 0.92559 0.91792 0.95107 0.90047 0.89400 0.94409 0.90569 0.88578 0.87557 0.88263 0.87301 0.88842 0.87078 0.88475 0.90449 0.92278 0.91461 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.94 37.15 0.37 -0.74 16 2 C 0.04 0.37 5.46 -3.83 -0.02 0.35 16 3 N -0.53 -5.76 4.44 -226.63 -1.01 -6.77 16 4 C 0.04 0.49 5.47 -3.70 -0.02 0.46 16 5 C 0.12 1.62 6.67 -3.60 -0.02 1.59 16 6 N -1.00 -15.38 3.34 -113.50 -0.38 -15.76 16 7 S 2.69 51.55 5.74 -107.50 -0.62 50.94 16 8 O -0.97 -19.91 15.88 -57.17 -0.91 -20.82 16 9 O -0.97 -20.53 15.87 -57.17 -0.91 -21.44 16 10 C -0.62 -13.62 5.97 -39.66 -0.24 -13.86 16 11 C -0.17 -3.63 9.53 -39.29 -0.37 -4.01 16 12 C -0.10 -2.18 10.02 -39.66 -0.40 -2.58 16 13 C -0.18 -4.39 8.15 -38.87 -0.32 -4.71 16 14 C 0.08 2.06 5.27 -106.82 -0.56 1.50 16 15 C -0.52 -13.42 8.93 -37.74 -0.34 -13.76 16 16 H 0.08 2.02 8.00 -52.49 -0.42 1.60 16 17 C 0.04 1.04 4.80 -17.34 -0.08 0.95 16 18 N -0.78 -20.16 12.37 55.55 0.69 -19.48 16 19 Si 1.06 20.69 30.03 -169.99 -5.10 15.59 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 22 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 23 C -0.13 -3.04 9.26 -38.87 -0.36 -3.40 16 24 C 0.13 1.76 5.92 -3.83 -0.02 1.74 16 25 C 0.07 0.81 2.59 -67.82 -0.18 0.64 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 C -0.15 -1.34 8.53 37.15 0.32 -1.03 16 28 H 0.05 0.41 6.58 -51.93 -0.34 0.07 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.03 0.27 8.07 -51.93 -0.42 -0.15 16 32 H 0.08 0.65 5.55 -51.93 -0.29 0.36 16 33 H 0.09 0.80 6.39 -51.93 -0.33 0.47 16 34 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 1.25 6.93 -51.93 -0.36 0.89 16 37 H 0.11 2.09 7.60 -52.49 -0.40 1.69 16 38 H 0.10 1.92 8.06 -52.48 -0.42 1.50 16 39 H 0.11 2.72 6.69 -52.49 -0.35 2.37 16 40 H 0.30 7.92 7.16 -40.82 -0.29 7.62 16 41 H 0.11 2.57 7.60 -52.48 -0.40 2.17 16 42 H 0.10 1.38 6.93 -51.93 -0.36 1.02 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 372.61 15.07 5.62 5.62 Total: -1.00 -30.08 372.61 -11.76 -41.84 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.90 Total: 7.12 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: -2.25 Total: -36.84 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: -0.70 Total: -42.00 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -1.81 Total: -42.26 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.10 Total: 15.59 kcal Atomic # 16 Polarization: 51.55 SS G_CDS: -0.62 Total: 50.94 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.08 -11.76 -41.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.225 kcal (2) G-P(sol) polarization free energy of solvation -30.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds