Wall clock time and date at job start Tue Mar 31 2020 21:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46902 * 109.46970 * 2 1 4 4 C 1.46898 * 111.00189 * 289.46991 * 3 2 1 5 5 C 1.53237 * 109.34314 * 172.74806 * 4 3 2 6 6 N 1.47077 * 108.52199 * 53.82646 * 5 4 3 7 7 S 1.65602 * 120.88308 * 128.82149 * 6 5 4 8 8 O 1.42105 * 106.39704 * 336.45881 * 7 6 5 9 9 O 1.42097 * 106.40230 * 203.54037 * 7 6 5 10 10 C 1.76200 * 107.21941 * 89.99483 * 7 6 5 11 11 C 1.38655 * 119.88191 * 269.98394 * 10 7 6 12 12 C 1.38606 * 120.50172 * 180.02562 * 11 10 7 13 13 C 1.37638 * 120.25257 * 359.66723 * 12 11 10 14 14 C 1.40698 * 119.74020 * 0.62968 * 13 12 11 15 15 C 1.41393 * 120.24614 * 179.67394 * 14 13 12 16 16 H 1.07995 * 120.00494 * 154.78454 * 15 14 13 17 17 C 1.39951 * 119.99656 * 334.78789 * 15 14 13 18 18 N 1.30820 * 120.00081 * 329.44859 * 17 15 14 19 19 Si 1.86805 * 119.99884 * 149.44993 * 17 15 14 20 20 H 1.48500 * 109.46946 * 180.02562 * 19 17 15 21 21 H 1.48502 * 109.47086 * 299.99716 * 19 17 15 22 22 H 1.48495 * 109.47048 * 59.99655 * 19 17 15 23 23 C 1.37600 * 119.87023 * 90.00243 * 10 7 6 24 24 C 1.47077 * 118.23946 * 309.08708 * 6 5 4 25 25 C 1.46898 * 111.00106 * 165.16415 * 3 2 1 26 26 H 1.09003 * 109.49218 * 67.29868 * 25 3 2 27 27 C 1.52994 * 109.49445 * 307.21541 * 25 3 2 28 28 H 1.09004 * 109.47399 * 59.99744 * 1 2 3 29 29 H 1.08997 * 109.46996 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47318 * 300.00052 * 1 2 3 31 31 H 1.08999 * 109.47410 * 240.00730 * 2 1 3 32 32 H 1.08997 * 109.47209 * 119.99857 * 2 1 3 33 33 H 1.09001 * 109.49421 * 52.78654 * 4 3 2 34 34 H 1.09007 * 109.51372 * 292.71878 * 4 3 2 35 35 H 1.09002 * 109.62555 * 294.11758 * 5 4 3 36 36 H 1.08995 * 109.79452 * 173.63700 * 5 4 3 37 37 H 1.08002 * 119.74695 * 359.97438 * 11 10 7 38 38 H 1.08003 * 119.87026 * 179.97438 * 12 11 10 39 39 H 1.08001 * 120.13395 * 180.31688 * 13 12 11 40 40 H 0.97002 * 119.99838 * 353.59421 * 18 17 15 41 41 H 1.08004 * 120.13168 * 359.97438 * 23 10 7 42 42 H 1.09000 * 109.63050 * 170.61662 * 24 6 5 43 43 H 1.08997 * 109.62963 * 291.20729 * 24 6 5 44 44 H 1.08999 * 109.47305 * 66.84506 * 27 25 3 45 45 H 1.09001 * 109.47426 * 186.84191 * 27 25 3 46 46 H 1.08999 * 109.47081 * 306.84358 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7641 2.0338 -1.2930 5 6 2.1214 3.5206 -1.1942 6 7 3.5024 3.6375 -0.7019 7 16 4.6127 4.5726 -1.4989 8 8 4.1597 4.6763 -2.8418 9 8 5.8920 4.0638 -1.1473 10 6 4.5166 6.1936 -0.8149 11 6 3.6459 7.1237 -1.3620 12 6 3.5603 8.4026 -0.8345 13 6 4.3357 8.7609 0.2448 14 6 5.2273 7.8272 0.8042 15 6 6.0339 8.1860 1.9087 16 1 6.3956 7.4243 2.5834 17 6 6.3635 9.5284 2.1277 18 7 6.4793 10.3473 1.1140 19 14 6.6379 10.1510 3.8674 20 1 6.9720 11.5974 3.8286 21 1 5.4020 9.9502 4.6658 22 1 7.7573 9.4004 4.4909 23 6 5.3062 6.5317 0.2601 24 6 3.8728 2.8973 0.5139 25 6 3.4449 1.4395 0.3511 26 1 4.0328 0.9773 -0.4419 27 6 3.6765 0.6880 1.6635 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.7101 1.9293 -1.5504 34 1 2.3750 1.5633 -2.0634 35 1 1.4420 4.0151 -0.4999 36 1 2.0425 3.9853 -2.1770 37 1 3.0304 6.8499 -2.2062 38 1 2.8790 9.1192 -1.2690 39 1 4.2637 9.7563 0.6575 40 1 6.4290 10.0066 0.2072 41 1 5.9836 5.8057 0.6849 42 1 4.9521 2.9467 0.6582 43 1 3.3650 3.3306 1.3755 44 1 3.4869 -0.3746 1.5121 45 1 4.7077 0.8305 1.9867 46 1 3.0001 1.0726 2.4267 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619493494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:41 Heat of formation + Delta-G solvation = -73.247699 kcal Electronic energy + Delta-G solvation = -28059.814812 eV Core-core repulsion = 24267.907550 eV Total energy + Delta-G solvation = -3791.907262 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.38315 -39.67914 -38.45924 -37.04048 -36.23554 -35.92823 -33.82857 -31.91525 -31.59710 -31.39501 -28.41135 -27.17454 -26.93336 -23.80440 -23.57725 -23.02384 -22.86206 -21.10102 -20.55465 -19.60955 -18.75930 -17.99845 -17.35099 -16.79721 -16.77205 -16.25378 -16.07471 -15.83024 -15.63253 -15.45667 -15.42085 -15.14566 -14.61925 -14.43137 -14.02659 -13.72984 -13.60817 -13.43151 -13.36035 -13.24549 -13.15311 -13.12794 -12.84969 -12.77530 -12.72473 -12.65001 -12.42849 -12.25300 -12.03674 -11.98577 -11.70393 -11.54989 -11.51714 -11.42844 -10.92704 -10.20647 -10.03927 -9.79566 -9.31898 -9.26939 -6.57388 -0.67594 0.21872 0.74568 1.49233 1.56955 1.78945 1.91863 2.28690 2.45822 2.64463 2.84373 3.22748 3.28780 3.61402 3.86535 3.98753 4.10343 4.15042 4.23242 4.27466 4.32602 4.40044 4.48291 4.52758 4.55305 4.62991 4.70228 4.73139 4.77107 4.86154 4.91556 4.92145 4.95767 5.01653 5.13417 5.16916 5.19700 5.33815 5.39840 5.43701 5.51927 5.56219 5.67195 5.69435 5.99726 6.07990 6.13841 6.16056 6.61518 6.75987 7.89710 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015995 B = 0.003298 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.102274 B = 8486.687918 C = 9202.708095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.042 3.958 3 N -0.537 5.537 4 C 0.046 3.954 5 C 0.116 3.884 6 N -0.994 5.994 7 S 2.710 3.290 8 O -0.982 6.982 9 O -0.991 6.991 10 C -0.627 4.627 11 C -0.163 4.163 12 C -0.100 4.100 13 C -0.194 4.194 14 C 0.055 3.945 15 C -0.558 4.558 16 H 0.078 0.922 17 C 0.010 3.990 18 N -0.804 5.804 19 Si 1.115 2.885 20 H -0.271 1.271 21 H -0.261 1.261 22 H -0.257 1.257 23 C -0.146 4.146 24 C 0.121 3.879 25 C 0.073 3.927 26 H 0.037 0.963 27 C -0.143 4.143 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.032 0.968 32 H 0.091 0.909 33 H 0.112 0.888 34 H 0.032 0.968 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.282 0.718 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.974 -17.101 0.807 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 N -0.263 5.263 4 C -0.083 4.083 5 C -0.009 4.009 6 N -0.833 5.833 7 S 2.805 3.195 8 O -0.972 6.972 9 O -0.981 6.981 10 C -0.715 4.715 11 C -0.184 4.184 12 C -0.119 4.119 13 C -0.214 4.214 14 C 0.051 3.949 15 C -0.585 4.585 16 H 0.096 0.904 17 C -0.208 4.208 18 N -0.425 5.425 19 Si 0.931 3.069 20 H -0.195 1.195 21 H -0.185 1.185 22 H -0.181 1.181 23 C -0.167 4.167 24 C -0.004 4.004 25 C -0.037 4.037 26 H 0.055 0.945 27 C -0.201 4.201 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.050 0.950 35 H 0.103 0.897 36 H 0.115 0.885 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.339 -15.725 1.290 18.863 hybrid contribution 0.242 -0.821 -1.405 1.646 sum -10.096 -16.546 -0.115 19.383 Atomic orbital electron populations 1.21749 0.93838 1.02166 1.02266 1.22294 0.96920 0.87725 1.01599 1.61991 1.15956 1.18083 1.30251 1.22482 1.02742 0.93157 0.89940 1.21785 0.80623 0.97794 1.00712 1.57585 1.24130 1.60890 1.40743 1.01097 0.72444 0.73082 0.72889 1.93475 1.82078 1.87438 1.34203 1.93481 1.40372 1.79567 1.84676 1.30410 1.08325 1.22812 1.09956 1.20413 1.01915 0.93930 1.02119 1.21081 0.98618 0.96396 0.95794 1.21407 0.99575 0.99927 1.00510 1.18042 0.92183 0.92411 0.92244 1.20782 1.30471 0.96857 1.10414 0.90357 1.28505 0.90050 0.93123 1.09119 1.70599 1.29996 1.39950 1.02004 0.83046 0.78946 0.76635 0.68255 1.19507 1.18527 1.18076 1.20781 1.00701 0.98415 0.96816 1.21686 1.00881 0.91529 0.86328 1.21831 0.88694 0.94501 0.98700 0.94531 1.21883 1.02780 1.00241 0.95199 0.92714 0.91084 0.92333 0.95000 0.89098 0.87003 0.94971 0.89693 0.88471 0.84870 0.85107 0.88371 0.90647 0.87317 0.89462 0.90053 0.90525 0.91251 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.94 71.98 0.72 -1.01 16 2 C 0.04 0.61 5.46 86.30 0.47 1.08 16 3 N -0.54 -10.38 4.44 -870.92 -3.87 -14.25 16 4 C 0.05 0.92 5.47 86.38 0.47 1.39 16 5 C 0.12 2.79 6.67 86.35 0.58 3.36 16 6 N -0.99 -29.54 3.34 -512.99 -1.71 -31.25 16 7 S 2.71 102.86 5.74 -56.49 -0.32 102.54 16 8 O -0.98 -39.04 15.88 -128.00 -2.03 -41.07 16 9 O -0.99 -42.32 15.87 -128.00 -2.03 -44.35 16 10 C -0.63 -27.63 5.97 22.22 0.13 -27.49 16 11 C -0.16 -6.94 9.53 22.46 0.21 -6.73 16 12 C -0.10 -4.41 10.02 22.22 0.22 -4.18 16 13 C -0.19 -9.80 8.15 22.73 0.19 -9.62 16 14 C 0.05 2.91 5.27 -21.29 -0.11 2.80 16 15 C -0.56 -29.67 8.93 23.46 0.21 -29.46 16 16 H 0.08 4.05 8.00 -2.91 -0.02 4.03 16 17 C 0.01 0.49 4.80 85.26 0.41 0.90 16 18 N -0.80 -42.64 12.37 21.83 0.27 -42.37 16 19 Si 1.11 41.81 30.03 68.60 2.06 43.87 16 20 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.26 -9.20 7.11 99.48 0.71 -8.50 16 22 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 23 C -0.15 -7.25 9.26 22.73 0.21 -7.04 16 24 C 0.12 3.23 5.92 86.20 0.51 3.74 16 25 C 0.07 1.56 2.59 44.84 0.12 1.68 16 26 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 27 C -0.14 -2.31 8.53 71.98 0.61 -1.69 16 28 H 0.05 0.65 6.58 -2.39 -0.02 0.64 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.03 0.47 8.07 -2.39 -0.02 0.45 16 32 H 0.09 1.16 5.55 -2.39 -0.01 1.15 16 33 H 0.11 1.69 6.39 -2.39 -0.02 1.67 16 34 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.10 2.33 6.93 -2.39 -0.02 2.31 16 37 H 0.13 4.91 7.60 -2.91 -0.02 4.89 16 38 H 0.13 4.84 8.06 -2.91 -0.02 4.81 16 39 H 0.10 5.07 6.69 -2.91 -0.02 5.05 16 40 H 0.28 15.65 7.16 -92.71 -0.66 14.99 16 41 H 0.11 5.27 7.60 -2.91 -0.02 5.25 16 42 H 0.09 2.49 6.93 -2.39 -0.02 2.47 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.08 0.98 6.43 -2.39 -0.02 0.96 16 45 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -65.71 372.61 -1.61 -67.32 By element: Atomic # 1 Polarization: 30.75 SS G_CDS: 1.08 Total: 31.83 kcal Atomic # 6 Polarization: -77.22 SS G_CDS: 4.95 Total: -72.28 kcal Atomic # 7 Polarization: -82.56 SS G_CDS: -5.31 Total: -87.87 kcal Atomic # 8 Polarization: -81.36 SS G_CDS: -4.06 Total: -85.42 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.06 Total: 43.87 kcal Atomic # 16 Polarization: 102.86 SS G_CDS: -0.32 Total: 102.54 kcal Total: -65.71 -1.61 -67.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.923 kcal (2) G-P(sol) polarization free energy of solvation -65.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds