Wall clock time and date at job start Tue Mar 31 2020 21:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46895 * 109.47056 * 2 1 4 4 C 1.47448 * 111.00069 * 54.28534 * 3 2 1 5 5 C 1.54320 * 107.23088 * 123.25676 * 4 3 2 6 6 C 1.55133 * 103.02169 * 22.28548 * 5 4 3 7 7 C 1.47842 * 111.00103 * 175.12754 * 3 2 1 8 8 H 1.09000 * 110.37599 * 332.58074 * 7 3 2 9 9 C 1.53004 * 110.37365 * 94.80754 * 7 3 2 10 10 N 1.46500 * 109.46859 * 300.31025 * 9 7 3 11 11 S 1.65602 * 119.99761 * 162.45799 * 10 9 7 12 12 O 1.42105 * 106.40246 * 312.28554 * 11 10 9 13 13 O 1.42101 * 106.40213 * 179.36707 * 11 10 9 14 14 C 1.76200 * 107.22061 * 65.82496 * 11 10 9 15 15 C 1.37645 * 120.12645 * 243.37849 * 14 11 10 16 16 C 1.38613 * 120.24144 * 180.02562 * 15 14 11 17 17 C 1.38654 * 120.50533 * 359.97438 * 16 15 14 18 18 C 1.37593 * 120.24688 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.12468 * 63.39202 * 14 11 10 20 20 C 1.41390 * 120.24757 * 359.96038 * 19 14 11 21 21 H 1.08000 * 119.99872 * 331.36284 * 20 19 14 22 22 C 1.39945 * 120.00228 * 151.35067 * 20 19 14 23 23 N 1.30824 * 120.00103 * 343.77745 * 22 20 19 24 24 Si 1.86800 * 119.99907 * 163.76706 * 22 20 19 25 25 H 1.48500 * 109.47196 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47073 * 120.00684 * 24 22 20 27 27 H 1.48506 * 109.47086 * 240.00693 * 24 22 20 28 28 H 1.09000 * 109.47128 * 58.38831 * 1 2 3 29 29 H 1.08993 * 109.47097 * 178.38692 * 1 2 3 30 30 H 1.08993 * 109.47339 * 298.38742 * 1 2 3 31 31 H 1.08994 * 109.47029 * 240.00041 * 2 1 3 32 32 H 1.09003 * 109.47157 * 119.99886 * 2 1 3 33 33 H 1.08998 * 109.89156 * 242.66284 * 4 3 2 34 34 H 1.08997 * 109.88515 * 3.69040 * 4 3 2 35 35 H 1.09002 * 110.70634 * 140.66657 * 5 4 3 36 36 H 1.08998 * 110.70422 * 263.72337 * 5 4 3 37 37 H 1.09005 * 110.99300 * 206.25153 * 6 5 4 38 38 H 1.09000 * 110.99403 * 82.43490 * 6 5 4 39 39 H 1.08999 * 109.46961 * 180.31086 * 9 7 3 40 40 H 1.08993 * 109.46902 * 60.31132 * 9 7 3 41 41 H 0.96999 * 120.00243 * 342.45624 * 10 9 7 42 42 H 1.07993 * 119.87428 * 0.02562 * 15 14 11 43 43 H 1.07999 * 119.74141 * 180.02562 * 16 15 14 44 44 H 1.08003 * 119.87679 * 180.28733 * 17 16 15 45 45 H 1.08008 * 120.12371 * 179.97438 * 18 17 16 46 46 H 0.97002 * 120.00091 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4382 2.1510 1.1177 5 6 2.6124 2.7100 1.9485 6 6 3.7889 2.7065 0.9373 7 6 3.4929 1.4261 0.1172 8 1 3.8565 0.5437 0.6438 9 6 4.1350 1.5206 -1.2683 10 7 3.7459 0.3559 -2.0673 11 16 3.9177 0.3867 -3.7141 12 8 3.3630 1.6195 -4.1523 13 8 3.4736 -0.8773 -4.1876 14 6 5.6441 0.4681 -4.0571 15 6 6.1698 1.5659 -4.6997 16 6 7.5274 1.6321 -4.9712 17 6 8.3709 0.5964 -4.5994 18 6 7.8672 -0.5107 -3.9559 19 6 6.4904 -0.5891 -3.6753 20 6 5.9617 -1.7215 -3.0141 21 1 5.0787 -1.6248 -2.3998 22 6 6.5824 -2.9678 -3.1559 23 7 7.4390 -3.1655 -4.1247 24 14 6.1880 -4.3488 -1.9615 25 1 5.1954 -3.8730 -0.9648 26 1 5.6255 -5.5030 -2.7076 27 1 7.4294 -4.7686 -1.2629 28 1 -0.3633 0.5387 -0.8752 29 1 -0.3633 -1.0272 -0.0289 30 1 -0.3633 0.4885 0.9040 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.8343 2.9715 0.7303 34 1 0.8225 1.4968 1.7348 35 1 2.3974 3.7239 2.2860 36 1 2.8279 2.0604 2.7968 37 1 4.7463 2.6277 1.4524 38 1 3.7607 3.5920 0.3023 39 1 5.2199 1.5444 -1.1651 40 1 3.7972 2.4306 -1.7640 41 1 3.3878 -0.4333 -1.6317 42 1 5.5220 2.3785 -4.9935 43 1 7.9314 2.4975 -5.4755 44 1 9.4279 0.6606 -4.8118 45 1 8.5260 -1.3165 -3.6675 46 1 7.8695 -4.0292 -4.2228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619572058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:43 Heat of formation + Delta-G solvation = -54.921529 kcal Electronic energy + Delta-G solvation = -28610.794563 eV Core-core repulsion = 24819.681983 eV Total energy + Delta-G solvation = -3791.112580 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.45515 -37.56720 -36.12089 -34.73393 -34.57021 -33.85598 -33.45325 -30.23206 -29.58924 -29.42757 -28.56694 -25.54743 -24.90060 -22.66644 -21.62354 -21.13822 -20.76934 -20.08371 -18.44265 -17.68349 -16.80626 -16.67840 -16.20022 -15.55067 -15.38755 -15.07674 -14.47727 -14.36828 -14.12693 -13.89076 -13.28964 -13.23095 -13.21371 -13.12464 -12.75029 -12.42239 -12.03082 -11.87711 -11.78401 -11.61501 -11.52805 -11.28361 -11.21612 -11.17508 -11.15709 -11.00914 -10.93567 -10.87501 -10.74185 -10.71784 -10.54270 -10.44107 -9.86567 -9.42378 -9.38366 -8.64712 -8.24862 -8.00738 -7.60232 -7.05932 -4.74112 1.63380 2.36536 2.72152 2.95229 3.00144 3.09795 3.75763 3.86265 4.04581 4.40000 4.54479 4.62647 4.82395 4.86707 5.05494 5.18546 5.21061 5.29187 5.34391 5.41317 5.46994 5.57944 5.67535 5.75162 5.75770 5.80446 5.89694 5.99058 6.03130 6.06782 6.10784 6.16583 6.22075 6.25407 6.40667 6.49266 6.79280 6.94704 7.01413 7.10083 7.12541 7.32438 7.50998 7.59156 7.71120 7.81918 7.90722 8.29045 8.50582 8.66020 9.89463 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011001 B = 0.004814 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.545668 B = 5815.189334 C = 6814.701726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.041 3.959 3 N -0.519 5.519 4 C 0.038 3.962 5 C -0.142 4.142 6 C -0.123 4.123 7 C 0.065 3.935 8 H 0.063 0.937 9 C 0.142 3.858 10 N -1.116 6.116 11 S 2.703 3.297 12 O -0.995 6.995 13 O -0.968 6.968 14 C -0.776 4.776 15 C -0.001 4.001 16 C -0.252 4.252 17 C -0.075 4.075 18 C -0.160 4.160 19 C 0.189 3.811 20 C -0.450 4.450 21 H 0.087 0.913 22 C 0.083 3.917 23 N -0.772 5.772 24 Si 0.912 3.088 25 H -0.256 1.256 26 H -0.268 1.268 27 H -0.269 1.269 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.033 0.967 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.406 0.594 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.119 0.881 46 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.768 5.471 12.159 14.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.088 4.088 3 N -0.244 5.244 4 C -0.089 4.089 5 C -0.180 4.180 6 C -0.162 4.162 7 C -0.044 4.044 8 H 0.080 0.920 9 C 0.015 3.985 10 N -0.874 5.874 11 S 2.799 3.201 12 O -0.986 6.986 13 O -0.959 6.959 14 C -0.871 4.871 15 C -0.021 4.021 16 C -0.272 4.272 17 C -0.094 4.094 18 C -0.180 4.180 19 C 0.184 3.816 20 C -0.478 4.478 21 H 0.105 0.895 22 C -0.139 4.139 23 N -0.395 5.395 24 Si 0.735 3.265 25 H -0.179 1.179 26 H -0.193 1.193 27 H -0.194 1.194 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.242 0.758 42 H 0.126 0.874 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.136 0.864 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.443 5.633 10.874 13.838 hybrid contribution 0.898 -1.452 1.448 2.239 sum -5.544 4.181 12.322 14.144 Atomic orbital electron populations 1.21906 0.94935 1.01848 1.02409 1.22397 0.96020 0.89399 1.00936 1.63538 1.05529 1.12406 1.42905 1.22890 0.96793 0.97981 0.91261 1.22770 0.95691 1.01551 0.97996 1.22708 0.98333 0.97910 0.97203 1.22828 0.87817 0.98062 0.95726 0.91951 1.21114 0.98119 0.88746 0.90563 1.55671 1.81035 1.23803 1.26897 1.01027 0.74771 0.72608 0.71647 1.93446 1.78180 1.46761 1.80201 1.93534 1.81773 1.42513 1.78036 1.29958 1.22633 1.07646 1.26828 1.20268 0.94970 0.94333 0.92540 1.20479 0.93961 1.00462 1.12309 1.20874 0.97530 0.94213 0.96773 1.21383 0.95583 0.97389 1.03669 1.16974 0.91019 0.88810 0.84762 1.19839 1.10574 0.92207 1.25199 0.89498 1.25930 0.92976 1.00423 0.94593 1.69811 1.20201 1.25229 1.24225 0.86179 0.79563 0.80028 0.80680 1.17901 1.19329 1.19435 0.91549 0.92193 0.92702 0.90131 0.94915 0.90606 0.92509 0.90823 0.91721 0.90492 0.90012 0.91535 0.90075 0.75844 0.87405 0.88751 0.88870 0.86358 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.64 37.16 0.36 -1.27 16 2 C 0.04 0.50 5.27 -3.82 -0.02 0.48 16 3 N -0.52 -6.57 4.85 -223.38 -1.08 -7.65 16 4 C 0.04 0.39 6.16 -2.83 -0.02 0.37 16 5 C -0.14 -1.25 6.94 -24.91 -0.17 -1.42 16 6 C -0.12 -1.24 6.49 -24.60 -0.16 -1.40 16 7 C 0.07 0.82 2.68 -66.19 -0.18 0.64 16 8 H 0.06 0.78 7.70 -51.93 -0.40 0.38 16 9 C 0.14 2.18 5.97 -4.04 -0.02 2.16 16 10 N -1.12 -20.03 4.58 -10.61 -0.05 -20.08 16 11 S 2.70 60.44 4.96 -107.50 -0.53 59.91 16 12 O -1.00 -23.29 16.38 -57.17 -0.94 -24.23 16 13 O -0.97 -24.59 16.71 -57.17 -0.96 -25.55 16 14 C -0.78 -18.70 5.94 -38.87 -0.23 -18.93 16 15 C 0.00 -0.03 9.53 -39.66 -0.38 -0.41 16 16 C -0.25 -5.53 10.05 -39.29 -0.39 -5.92 16 17 C -0.07 -1.68 10.02 -39.66 -0.40 -2.08 16 18 C -0.16 -3.96 8.67 -38.88 -0.34 -4.29 16 19 C 0.19 4.80 5.53 -106.83 -0.59 4.21 16 20 C -0.45 -11.22 7.66 -37.74 -0.29 -11.51 16 21 H 0.09 2.02 5.66 -52.49 -0.30 1.73 16 22 C 0.08 1.98 5.14 -17.34 -0.09 1.89 16 23 N -0.77 -19.03 11.15 55.55 0.62 -18.41 16 24 Si 0.91 17.80 29.59 -169.99 -5.03 12.77 16 25 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 26 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 27 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.51 6.23 -51.93 -0.32 0.18 16 31 H 0.08 1.10 5.51 -51.93 -0.29 0.81 16 32 H 0.03 0.37 7.97 -51.93 -0.41 -0.04 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.52 5.94 -51.93 -0.31 0.22 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.83 8.04 -51.93 -0.42 0.42 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 1.29 7.66 -51.93 -0.40 0.90 16 41 H 0.41 6.76 5.76 -34.47 -0.20 6.56 16 42 H 0.11 2.30 7.33 -52.49 -0.38 1.91 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 45 H 0.12 2.93 6.42 -52.48 -0.34 2.59 16 46 H 0.29 6.33 8.30 -40.82 -0.34 5.99 16 LS Contribution 370.88 15.07 5.59 5.59 Total: -1.00 -30.69 370.88 -12.00 -42.70 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -6.70 Total: 12.45 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: -2.92 Total: -37.49 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.51 Total: -46.14 kcal Atomic # 8 Polarization: -47.88 SS G_CDS: -1.89 Total: -49.78 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 60.44 SS G_CDS: -0.53 Total: 59.91 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.69 -12.00 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.226 kcal (2) G-P(sol) polarization free energy of solvation -30.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds