Wall clock time and date at job start Tue Mar 31 2020 21:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46895 * 109.47056 * 2 1 4 4 C 1.47448 * 111.00069 * 54.28534 * 3 2 1 5 5 C 1.54320 * 107.23088 * 123.25676 * 4 3 2 6 6 C 1.55133 * 103.02169 * 22.28548 * 5 4 3 7 7 C 1.47842 * 111.00103 * 175.12754 * 3 2 1 8 8 H 1.09000 * 110.37599 * 332.58074 * 7 3 2 9 9 C 1.53004 * 110.37365 * 94.80754 * 7 3 2 10 10 N 1.46500 * 109.46859 * 300.31025 * 9 7 3 11 11 S 1.65602 * 119.99761 * 162.45799 * 10 9 7 12 12 O 1.42105 * 106.40246 * 312.28554 * 11 10 9 13 13 O 1.42101 * 106.40213 * 179.36707 * 11 10 9 14 14 C 1.76200 * 107.22061 * 65.82496 * 11 10 9 15 15 C 1.37645 * 120.12645 * 243.37849 * 14 11 10 16 16 C 1.38613 * 120.24144 * 180.02562 * 15 14 11 17 17 C 1.38654 * 120.50533 * 359.97438 * 16 15 14 18 18 C 1.37593 * 120.24688 * 0.02562 * 17 16 15 19 19 C 1.40698 * 120.12468 * 63.39202 * 14 11 10 20 20 C 1.41390 * 120.24757 * 359.96038 * 19 14 11 21 21 H 1.08000 * 119.99872 * 331.36284 * 20 19 14 22 22 C 1.39945 * 120.00228 * 151.35067 * 20 19 14 23 23 N 1.30824 * 120.00103 * 343.77745 * 22 20 19 24 24 Si 1.86800 * 119.99907 * 163.76706 * 22 20 19 25 25 H 1.48500 * 109.47196 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47073 * 120.00684 * 24 22 20 27 27 H 1.48506 * 109.47086 * 240.00693 * 24 22 20 28 28 H 1.09000 * 109.47128 * 58.38831 * 1 2 3 29 29 H 1.08993 * 109.47097 * 178.38692 * 1 2 3 30 30 H 1.08993 * 109.47339 * 298.38742 * 1 2 3 31 31 H 1.08994 * 109.47029 * 240.00041 * 2 1 3 32 32 H 1.09003 * 109.47157 * 119.99886 * 2 1 3 33 33 H 1.08998 * 109.89156 * 242.66284 * 4 3 2 34 34 H 1.08997 * 109.88515 * 3.69040 * 4 3 2 35 35 H 1.09002 * 110.70634 * 140.66657 * 5 4 3 36 36 H 1.08998 * 110.70422 * 263.72337 * 5 4 3 37 37 H 1.09005 * 110.99300 * 206.25153 * 6 5 4 38 38 H 1.09000 * 110.99403 * 82.43490 * 6 5 4 39 39 H 1.08999 * 109.46961 * 180.31086 * 9 7 3 40 40 H 1.08993 * 109.46902 * 60.31132 * 9 7 3 41 41 H 0.96999 * 120.00243 * 342.45624 * 10 9 7 42 42 H 1.07993 * 119.87428 * 0.02562 * 15 14 11 43 43 H 1.07999 * 119.74141 * 180.02562 * 16 15 14 44 44 H 1.08003 * 119.87679 * 180.28733 * 17 16 15 45 45 H 1.08008 * 120.12371 * 179.97438 * 18 17 16 46 46 H 0.97002 * 120.00091 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.4382 2.1510 1.1177 5 6 2.6124 2.7100 1.9485 6 6 3.7889 2.7065 0.9373 7 6 3.4929 1.4261 0.1172 8 1 3.8565 0.5437 0.6438 9 6 4.1350 1.5206 -1.2683 10 7 3.7459 0.3559 -2.0673 11 16 3.9177 0.3867 -3.7141 12 8 3.3630 1.6195 -4.1523 13 8 3.4736 -0.8773 -4.1876 14 6 5.6441 0.4681 -4.0571 15 6 6.1698 1.5659 -4.6997 16 6 7.5274 1.6321 -4.9712 17 6 8.3709 0.5964 -4.5994 18 6 7.8672 -0.5107 -3.9559 19 6 6.4904 -0.5891 -3.6753 20 6 5.9617 -1.7215 -3.0141 21 1 5.0787 -1.6248 -2.3998 22 6 6.5824 -2.9678 -3.1559 23 7 7.4390 -3.1655 -4.1247 24 14 6.1880 -4.3488 -1.9615 25 1 5.1954 -3.8730 -0.9648 26 1 5.6255 -5.5030 -2.7076 27 1 7.4294 -4.7686 -1.2629 28 1 -0.3633 0.5387 -0.8752 29 1 -0.3633 -1.0272 -0.0289 30 1 -0.3633 0.4885 0.9040 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.8343 2.9715 0.7303 34 1 0.8225 1.4968 1.7348 35 1 2.3974 3.7239 2.2860 36 1 2.8279 2.0604 2.7968 37 1 4.7463 2.6277 1.4524 38 1 3.7607 3.5920 0.3023 39 1 5.2199 1.5444 -1.1651 40 1 3.7972 2.4306 -1.7640 41 1 3.3878 -0.4333 -1.6317 42 1 5.5220 2.3785 -4.9935 43 1 7.9314 2.4975 -5.4755 44 1 9.4279 0.6606 -4.8118 45 1 8.5260 -1.3165 -3.6675 46 1 7.8695 -4.0292 -4.2228 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619572058.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:42 Heat of formation + Delta-G solvation = -75.329665 kcal Electronic energy + Delta-G solvation = -28611.679526 eV Core-core repulsion = 24819.681983 eV Total energy + Delta-G solvation = -3791.997543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.37597 -39.36967 -37.99438 -36.62803 -35.94656 -35.60410 -34.31855 -32.03240 -31.37430 -30.49337 -29.44091 -27.35624 -25.99279 -23.62645 -23.38901 -22.94462 -21.70751 -21.01329 -20.10788 -19.49695 -18.41500 -18.00032 -17.48410 -17.21598 -16.92323 -16.33661 -16.02724 -15.67542 -15.37870 -15.07311 -14.93090 -14.85304 -14.47163 -14.26191 -14.02480 -13.69356 -13.40895 -13.34277 -13.22836 -12.99074 -12.93921 -12.90046 -12.82360 -12.78494 -12.50582 -12.46945 -12.12742 -12.07004 -12.01409 -11.79294 -11.70263 -11.63171 -11.48927 -11.17810 -11.13530 -10.14880 -9.82848 -9.44448 -9.17293 -8.83031 -6.60366 -0.12002 0.54238 0.96633 1.35100 1.48075 1.50858 2.14424 2.38803 2.62241 2.96510 3.05590 3.47447 3.69301 3.75337 3.89807 4.06291 4.17746 4.26794 4.32887 4.33963 4.38529 4.49946 4.56055 4.60888 4.66198 4.72072 4.73926 4.84440 4.94325 4.96836 5.04631 5.06350 5.12945 5.13351 5.15959 5.25683 5.31352 5.32677 5.42382 5.52251 5.71423 5.80448 6.00185 6.08481 6.10644 6.21018 6.26402 6.46850 6.67241 6.83271 8.15725 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011001 B = 0.004814 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.545668 B = 5815.189334 C = 6814.701726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.036 3.964 3 N -0.539 5.539 4 C 0.036 3.964 5 C -0.133 4.133 6 C -0.121 4.121 7 C 0.067 3.933 8 H 0.065 0.935 9 C 0.136 3.864 10 N -1.103 6.103 11 S 2.719 3.281 12 O -1.009 7.009 13 O -1.004 7.004 14 C -0.793 4.793 15 C -0.016 4.016 16 C -0.251 4.251 17 C -0.074 4.074 18 C -0.186 4.186 19 C 0.165 3.835 20 C -0.478 4.478 21 H 0.093 0.907 22 C 0.041 3.959 23 N -0.805 5.805 24 Si 0.974 3.026 25 H -0.246 1.246 26 H -0.269 1.269 27 H -0.254 1.254 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.413 0.587 42 H 0.121 0.879 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.109 0.891 46 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.873 6.026 14.184 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 N -0.264 5.264 4 C -0.091 4.091 5 C -0.171 4.171 6 C -0.159 4.159 7 C -0.043 4.043 8 H 0.083 0.917 9 C 0.010 3.990 10 N -0.865 5.865 11 S 2.816 3.184 12 O -0.999 6.999 13 O -0.994 6.994 14 C -0.887 4.887 15 C -0.035 4.035 16 C -0.271 4.271 17 C -0.092 4.092 18 C -0.206 4.206 19 C 0.160 3.840 20 C -0.506 4.506 21 H 0.110 0.890 22 C -0.178 4.178 23 N -0.429 5.429 24 Si 0.793 3.207 25 H -0.169 1.169 26 H -0.194 1.194 27 H -0.178 1.178 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.251 0.749 42 H 0.138 0.862 43 H 0.146 0.854 44 H 0.141 0.859 45 H 0.127 0.873 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.538 6.206 12.892 15.731 hybrid contribution 0.937 -1.514 0.758 1.935 sum -5.601 4.692 13.650 15.483 Atomic orbital electron populations 1.21878 0.93779 1.02456 1.02552 1.22417 0.97053 0.89350 1.00379 1.63462 1.05525 1.12797 1.44645 1.22946 0.97395 0.97877 0.90854 1.22745 0.94136 1.02680 0.97538 1.22728 0.99703 0.96286 0.97219 1.22788 0.87954 0.99618 0.93927 0.91690 1.21338 0.98584 0.87204 0.91883 1.55312 1.80725 1.25053 1.25427 1.00348 0.74026 0.71513 0.72558 1.93416 1.78258 1.47059 1.81213 1.93474 1.82253 1.44078 1.79640 1.30198 1.23338 1.07883 1.27244 1.20581 0.95973 0.94476 0.92515 1.20881 0.93525 1.01250 1.11413 1.21232 0.99251 0.93362 0.95387 1.21452 0.95478 0.98284 1.05410 1.17287 0.91698 0.89553 0.85426 1.20131 1.11443 0.92946 1.26061 0.88959 1.26811 0.92604 1.02492 0.95896 1.69844 1.21143 1.26384 1.25503 0.85272 0.80092 0.76688 0.78643 1.16910 1.19357 1.17832 0.92967 0.91302 0.91030 0.92242 0.93839 0.90717 0.91352 0.89178 0.90771 0.89163 0.90290 0.91424 0.90853 0.74949 0.86151 0.85436 0.85869 0.87285 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.64 71.98 0.69 -2.28 16 2 C 0.04 0.85 5.27 86.31 0.46 1.31 16 3 N -0.54 -13.00 4.85 -860.65 -4.17 -17.17 16 4 C 0.04 0.66 6.16 86.65 0.53 1.19 16 5 C -0.13 -1.96 6.94 31.77 0.22 -1.74 16 6 C -0.12 -2.19 6.49 31.98 0.21 -1.98 16 7 C 0.07 1.61 2.68 45.39 0.12 1.73 16 8 H 0.07 1.52 7.70 -2.39 -0.02 1.51 16 9 C 0.14 4.18 5.97 86.38 0.52 4.69 16 10 N -1.10 -40.14 4.58 -187.49 -0.86 -40.99 16 11 S 2.72 124.17 4.96 -56.49 -0.28 123.89 16 12 O -1.01 -47.82 16.38 -128.00 -2.10 -49.92 16 13 O -1.00 -52.51 16.71 -128.00 -2.14 -54.65 16 14 C -0.79 -38.80 5.94 22.73 0.14 -38.66 16 15 C -0.02 -0.72 9.53 22.22 0.21 -0.51 16 16 C -0.25 -10.65 10.05 22.46 0.23 -10.42 16 17 C -0.07 -3.24 10.02 22.22 0.22 -3.02 16 18 C -0.19 -9.31 8.67 22.73 0.20 -9.12 16 19 C 0.16 8.55 5.53 -21.29 -0.12 8.43 16 20 C -0.48 -24.31 7.66 23.46 0.18 -24.13 16 21 H 0.09 4.39 5.66 -2.91 -0.02 4.38 16 22 C 0.04 1.96 5.14 85.26 0.44 2.40 16 23 N -0.81 -40.42 11.15 21.83 0.24 -40.18 16 24 Si 0.97 36.20 29.59 68.60 2.03 38.23 16 25 H -0.25 -8.66 7.11 99.48 0.71 -7.95 16 26 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 27 H -0.25 -8.76 7.11 99.48 0.71 -8.05 16 28 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.17 6.23 -2.39 -0.01 1.15 16 31 H 0.06 1.63 5.51 -2.39 -0.01 1.61 16 32 H 0.04 0.92 7.97 -2.39 -0.02 0.90 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.07 5.94 -2.39 -0.01 1.06 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.08 1.48 8.04 -2.39 -0.02 1.46 16 39 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.07 2.35 7.66 -2.39 -0.02 2.33 16 41 H 0.41 13.98 5.76 -96.75 -0.56 13.42 16 42 H 0.12 5.07 7.33 -2.91 -0.02 5.05 16 43 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 44 H 0.12 4.56 8.06 -2.91 -0.02 4.54 16 45 H 0.11 5.54 6.42 -2.91 -0.02 5.52 16 46 H 0.30 13.22 8.30 -92.71 -0.77 12.45 16 Total: -1.00 -66.54 370.88 -2.60 -69.14 By element: Atomic # 1 Polarization: 43.32 SS G_CDS: 0.44 Total: 43.76 kcal Atomic # 6 Polarization: -76.34 SS G_CDS: 4.24 Total: -72.10 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -4.79 Total: -98.34 kcal Atomic # 8 Polarization: -100.34 SS G_CDS: -4.24 Total: -104.57 kcal Atomic # 14 Polarization: 36.20 SS G_CDS: 2.03 Total: 38.23 kcal Atomic # 16 Polarization: 124.17 SS G_CDS: -0.28 Total: 123.89 kcal Total: -66.54 -2.60 -69.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619572058.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.194 kcal (2) G-P(sol) polarization free energy of solvation -66.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds