Wall clock time and date at job start Tue Mar 31 2020 21:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.46962 * 2 1 4 4 C 1.46493 * 120.00425 * 85.00149 * 3 2 1 5 5 C 1.50706 * 109.47128 * 274.99517 * 4 3 2 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00436 * 179.72498 * 5 4 3 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46683 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47426 * 119.99743 * 9 7 5 12 12 H 1.48501 * 109.46833 * 239.99986 * 9 7 5 13 13 S 1.65610 * 119.99659 * 264.99299 * 3 2 1 14 14 O 1.42102 * 106.40166 * 23.54748 * 13 3 2 15 15 O 1.42099 * 106.39688 * 156.46396 * 13 3 2 16 16 N 1.65593 * 107.22016 * 270.00491 * 13 3 2 17 17 C 1.46498 * 120.00222 * 64.99768 * 16 13 3 18 18 H 1.09001 * 115.55018 * 359.42270 * 17 16 13 19 19 C 1.52999 * 117.50277 * 213.74511 * 17 16 13 20 20 C 1.53005 * 117.49881 * 145.08365 * 17 16 13 21 21 C 1.52994 * 117.49827 * 0.02562 * 20 17 16 22 22 C 1.50702 * 117.49945 * 215.00391 * 20 17 16 23 23 C 1.38236 * 120.00040 * 359.73277 * 22 20 17 24 24 C 1.38229 * 119.99933 * 179.78742 * 23 22 20 25 25 C 1.38238 * 120.00016 * 0.46088 * 24 23 22 26 26 C 1.38236 * 119.99676 * 359.76713 * 25 24 23 27 27 C 1.38226 * 120.00280 * 0.02723 * 26 25 24 28 28 H 1.08998 * 109.47126 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47356 * 300.00755 * 1 2 3 30 30 H 1.09004 * 109.46875 * 60.00137 * 1 2 3 31 31 H 1.09001 * 109.46999 * 239.99295 * 2 1 3 32 32 H 1.09001 * 109.46436 * 119.99603 * 2 1 3 33 33 H 1.09001 * 109.47786 * 154.99790 * 4 3 2 34 34 H 1.08998 * 109.47558 * 34.99653 * 4 3 2 35 35 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 36 36 H 0.97000 * 120.00114 * 245.00065 * 16 13 3 37 37 H 1.08998 * 117.49561 * 0.02562 * 19 17 16 38 38 H 1.09009 * 117.49682 * 145.02057 * 19 17 16 39 39 H 1.08998 * 109.47312 * 59.99409 * 21 20 17 40 40 H 1.08997 * 109.46990 * 179.97438 * 21 20 17 41 41 H 1.09003 * 109.46830 * 299.99507 * 21 20 17 42 42 H 1.08004 * 119.99849 * 359.97438 * 23 22 20 43 43 H 1.07998 * 120.00179 * 180.25454 * 24 23 22 44 44 H 1.07999 * 119.99919 * 179.79077 * 25 24 23 45 45 H 1.08005 * 119.99307 * 179.97438 * 26 25 24 46 46 H 1.08005 * 120.00197 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 1.2638 5 6 0.8360 2.7289 1.6355 6 1 -0.0225 2.5949 0.9941 7 6 0.7210 3.4631 2.7968 8 7 1.7652 3.6217 3.5805 9 14 -0.9181 4.2313 3.2578 10 1 -1.9268 3.9069 2.2174 11 1 -1.3662 3.6931 4.5672 12 1 -0.7641 5.7051 3.3549 13 16 2.4123 2.1201 -1.4288 14 8 1.6869 1.4413 -2.4449 15 8 2.3058 3.5185 -1.1999 16 7 4.0145 1.8135 -1.7138 17 6 4.4658 0.4411 -1.9567 18 1 3.6884 -0.3222 -1.9238 19 6 5.8570 0.0548 -1.4507 20 6 5.6117 0.2397 -2.9504 21 6 6.1990 1.4871 -3.6137 22 6 5.5792 -0.9988 -3.8084 23 6 4.5430 -1.9041 -3.6763 24 6 4.5109 -3.0379 -4.4664 25 6 5.5201 -3.2712 -5.3818 26 6 6.5588 -2.3682 -5.5105 27 6 6.5887 -1.2323 -4.7235 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.9080 2.8918 1.1512 34 1 2.4690 1.4184 2.0480 35 1 1.6843 4.1380 4.3977 36 1 4.6542 2.5426 -1.7198 37 1 6.4364 0.8217 -0.9367 38 1 5.9950 -0.9628 -1.0851 39 1 6.5956 2.1534 -2.8476 40 1 7.0011 1.1947 -4.2913 41 1 5.4187 2.0019 -4.1744 42 1 3.7568 -1.7240 -2.9579 43 1 3.6992 -3.7432 -4.3661 44 1 5.4968 -4.1588 -5.9967 45 1 7.3475 -2.5508 -6.2255 46 1 7.4004 -0.5270 -4.8237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619710942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:34 Heat of formation + Delta-G solvation = -28.185299 kcal Electronic energy + Delta-G solvation = -27950.027486 eV Core-core repulsion = 24160.074276 eV Total energy + Delta-G solvation = -3789.953210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.12512 -37.81796 -36.60901 -36.05982 -35.17661 -32.88727 -32.59303 -31.20145 -30.16870 -29.82385 -28.50587 -26.75335 -23.27564 -22.94884 -22.73708 -21.93040 -21.80771 -19.56535 -19.19053 -17.49771 -16.93262 -16.77596 -16.45119 -16.04404 -15.26378 -15.20334 -14.80855 -14.39358 -14.23692 -13.83646 -13.70765 -13.54144 -13.20317 -13.07384 -12.90410 -12.60139 -12.43690 -12.22993 -12.17787 -11.87064 -11.67519 -11.55531 -11.48485 -11.42571 -11.27514 -11.15957 -11.08677 -11.00520 -10.95775 -10.47675 -10.40867 -10.28176 -9.89564 -9.61477 -9.07196 -9.02078 -8.62932 -8.43603 -8.10121 -6.05866 -4.08736 1.13830 1.21593 1.25228 3.30951 3.38829 3.39877 3.44659 3.46174 3.87005 4.11492 4.40170 4.45266 4.47774 4.64522 4.71760 4.83458 4.91713 4.95847 5.04317 5.15268 5.29324 5.31058 5.39967 5.45326 5.61509 5.67039 5.69021 5.72809 5.82737 5.87652 5.92301 5.93618 6.03397 6.14126 6.19415 6.34613 6.36752 6.41057 6.48577 6.68906 6.84280 6.97933 7.05152 7.25659 7.42589 7.63055 7.92172 8.21720 8.93715 9.56041 11.02924 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.003082 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.736861 B = 9083.155306 C = 9533.034160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.135 3.865 3 N -0.990 5.990 4 C 0.258 3.742 5 C -0.524 4.524 6 H 0.063 0.937 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.779 3.221 14 O -0.992 6.992 15 O -0.962 6.962 16 N -1.102 6.102 17 C 0.108 3.892 18 H 0.134 0.866 19 C -0.168 4.168 20 C -0.104 4.104 21 C -0.115 4.115 22 C -0.037 4.037 23 C -0.119 4.119 24 C -0.114 4.114 25 C -0.128 4.128 26 C -0.120 4.120 27 C -0.115 4.115 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.262 0.738 36 H 0.413 0.587 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.058 -12.796 -14.005 21.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.008 3.992 3 N -0.833 5.833 4 C 0.136 3.864 5 C -0.564 4.564 6 H 0.082 0.918 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.787 3.213 14 O -0.975 6.975 15 O -0.946 6.946 16 N -0.856 5.856 17 C -0.001 4.001 18 H 0.151 0.849 19 C -0.207 4.207 20 C -0.107 4.107 21 C -0.172 4.172 22 C -0.038 4.038 23 C -0.137 4.137 24 C -0.132 4.132 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.133 4.133 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.246 0.754 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.371 -12.315 -14.378 21.586 hybrid contribution -0.299 0.561 0.646 0.906 sum 10.072 -11.754 -13.732 20.692 Atomic orbital electron populations 1.22262 0.96252 1.00879 1.03782 1.20984 0.94990 0.82353 1.00852 1.57748 1.78225 1.22954 1.24347 1.19050 0.97509 0.90929 0.78871 1.21568 0.96374 1.31848 1.06571 0.91842 1.24929 0.96838 0.96064 0.96256 1.69928 1.29291 1.40913 1.13431 0.86494 0.83884 0.79201 0.78197 1.19628 1.21027 1.20874 1.02077 0.72625 0.73446 0.73165 1.93551 1.70214 1.76399 1.57375 1.93650 1.84969 1.30326 1.85648 1.55940 1.29887 1.12470 1.87294 1.21451 0.92092 0.84763 1.01840 0.84893 1.23713 0.99525 1.03522 0.93964 1.20712 1.04316 0.94985 0.90686 1.21316 1.00608 0.94778 1.00509 1.19027 0.94755 0.93962 0.96032 1.21123 0.98119 0.94323 1.00089 1.21142 0.98663 0.97380 0.96048 1.21141 0.94928 0.99543 0.99015 1.21111 0.98596 0.94619 0.99433 1.20975 0.98471 0.97667 0.96139 0.93060 0.90196 0.92783 0.92552 0.90943 0.94567 0.94661 0.92814 0.75393 0.87632 0.87837 0.91904 0.91722 0.91649 0.85812 0.85932 0.86270 0.86201 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 9.83 37.16 0.37 -2.63 16 2 C 0.13 2.26 6.09 -4.04 -0.02 2.24 16 3 N -0.99 -19.86 2.86 -115.67 -0.33 -20.19 16 4 C 0.26 6.29 5.12 -5.19 -0.03 6.26 16 5 C -0.52 -14.35 8.41 -34.44 -0.29 -14.64 16 6 H 0.06 1.74 6.89 -52.49 -0.36 1.38 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.90 -25.86 13.29 55.43 0.74 -25.12 16 9 Si 0.89 21.71 29.54 -169.99 -5.02 16.68 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 S 2.78 54.28 6.03 -107.50 -0.65 53.63 16 14 O -0.99 -20.37 16.87 -57.17 -0.96 -21.33 16 15 O -0.96 -22.83 17.11 -57.17 -0.98 -23.80 16 16 N -1.10 -16.18 5.74 -4.89 -0.03 -16.21 16 17 C 0.11 1.35 5.80 -67.93 -0.39 0.96 16 18 H 0.13 1.63 4.84 -51.93 -0.25 1.38 16 19 C -0.17 -1.74 9.81 -26.69 -0.26 -2.00 16 20 C -0.10 -1.13 2.55 -155.62 -0.40 -1.53 16 21 C -0.12 -1.12 8.86 37.15 0.33 -0.79 16 22 C -0.04 -0.41 5.45 -104.62 -0.57 -0.98 16 23 C -0.12 -1.29 9.39 -39.59 -0.37 -1.66 16 24 C -0.11 -1.10 10.05 -39.58 -0.40 -1.50 16 25 C -0.13 -1.13 10.05 -39.58 -0.40 -1.52 16 26 C -0.12 -1.04 10.05 -39.59 -0.40 -1.44 16 27 C -0.11 -1.10 9.27 -39.59 -0.37 -1.47 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.56 6.59 -51.93 -0.34 1.22 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 0.80 6.40 -51.93 -0.33 0.47 16 32 H 0.07 1.12 8.00 -51.93 -0.42 0.70 16 33 H 0.04 0.94 7.61 -51.93 -0.40 0.55 16 34 H 0.04 0.87 8.00 -51.93 -0.42 0.46 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.41 5.37 8.13 -34.47 -0.28 5.09 16 37 H 0.11 1.04 8.05 -51.93 -0.42 0.62 16 38 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 39 H 0.06 0.55 7.64 -51.93 -0.40 0.16 16 40 H 0.06 0.53 6.14 -51.93 -0.32 0.21 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.12 1.30 5.93 -52.48 -0.31 0.98 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 44 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 45 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 46 H 0.12 0.98 6.45 -52.48 -0.34 0.64 16 LS Contribution 384.63 15.07 5.80 5.80 Total: -1.00 -33.55 384.63 -11.41 -44.96 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.67 Total: 4.69 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -3.30 Total: -19.10 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: 0.38 Total: -61.52 kcal Atomic # 8 Polarization: -43.19 SS G_CDS: -1.94 Total: -45.14 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 54.28 SS G_CDS: -0.65 Total: 53.63 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.55 -11.41 -44.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619710942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.771 kcal (2) G-P(sol) polarization free energy of solvation -33.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds