Wall clock time and date at job start Tue Mar 31 2020 21:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46494 * 109.46962 * 2 1 4 4 C 1.46493 * 120.00425 * 85.00149 * 3 2 1 5 5 C 1.50706 * 109.47128 * 274.99517 * 4 3 2 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00436 * 179.72498 * 5 4 3 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46683 * 359.97438 * 9 7 5 11 11 H 1.48492 * 109.47426 * 119.99743 * 9 7 5 12 12 H 1.48501 * 109.46833 * 239.99986 * 9 7 5 13 13 S 1.65610 * 119.99659 * 264.99299 * 3 2 1 14 14 O 1.42102 * 106.40166 * 23.54748 * 13 3 2 15 15 O 1.42099 * 106.39688 * 156.46396 * 13 3 2 16 16 N 1.65593 * 107.22016 * 270.00491 * 13 3 2 17 17 C 1.46498 * 120.00222 * 64.99768 * 16 13 3 18 18 H 1.09001 * 115.55018 * 359.42270 * 17 16 13 19 19 C 1.52999 * 117.50277 * 213.74511 * 17 16 13 20 20 C 1.53005 * 117.49881 * 145.08365 * 17 16 13 21 21 C 1.52994 * 117.49827 * 0.02562 * 20 17 16 22 22 C 1.50702 * 117.49945 * 215.00391 * 20 17 16 23 23 C 1.38236 * 120.00040 * 359.73277 * 22 20 17 24 24 C 1.38229 * 119.99933 * 179.78742 * 23 22 20 25 25 C 1.38238 * 120.00016 * 0.46088 * 24 23 22 26 26 C 1.38236 * 119.99676 * 359.76713 * 25 24 23 27 27 C 1.38226 * 120.00280 * 0.02723 * 26 25 24 28 28 H 1.08998 * 109.47126 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47356 * 300.00755 * 1 2 3 30 30 H 1.09004 * 109.46875 * 60.00137 * 1 2 3 31 31 H 1.09001 * 109.46999 * 239.99295 * 2 1 3 32 32 H 1.09001 * 109.46436 * 119.99603 * 2 1 3 33 33 H 1.09001 * 109.47786 * 154.99790 * 4 3 2 34 34 H 1.08998 * 109.47558 * 34.99653 * 4 3 2 35 35 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 36 36 H 0.97000 * 120.00114 * 245.00065 * 16 13 3 37 37 H 1.08998 * 117.49561 * 0.02562 * 19 17 16 38 38 H 1.09009 * 117.49682 * 145.02057 * 19 17 16 39 39 H 1.08998 * 109.47312 * 59.99409 * 21 20 17 40 40 H 1.08997 * 109.46990 * 179.97438 * 21 20 17 41 41 H 1.09003 * 109.46830 * 299.99507 * 21 20 17 42 42 H 1.08004 * 119.99849 * 359.97438 * 23 22 20 43 43 H 1.07998 * 120.00179 * 180.25454 * 24 23 22 44 44 H 1.07999 * 119.99919 * 179.79077 * 25 24 23 45 45 H 1.08005 * 119.99307 * 179.97438 * 26 25 24 46 46 H 1.08005 * 120.00197 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1087 1.2638 5 6 0.8360 2.7289 1.6355 6 1 -0.0225 2.5949 0.9941 7 6 0.7210 3.4631 2.7968 8 7 1.7652 3.6217 3.5805 9 14 -0.9181 4.2313 3.2578 10 1 -1.9268 3.9069 2.2174 11 1 -1.3662 3.6931 4.5672 12 1 -0.7641 5.7051 3.3549 13 16 2.4123 2.1201 -1.4288 14 8 1.6869 1.4413 -2.4449 15 8 2.3058 3.5185 -1.1999 16 7 4.0145 1.8135 -1.7138 17 6 4.4658 0.4411 -1.9567 18 1 3.6884 -0.3222 -1.9238 19 6 5.8570 0.0548 -1.4507 20 6 5.6117 0.2397 -2.9504 21 6 6.1990 1.4871 -3.6137 22 6 5.5792 -0.9988 -3.8084 23 6 4.5430 -1.9041 -3.6763 24 6 4.5109 -3.0379 -4.4664 25 6 5.5201 -3.2712 -5.3818 26 6 6.5588 -2.3682 -5.5105 27 6 6.5887 -1.2323 -4.7235 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.9080 2.8918 1.1512 34 1 2.4690 1.4184 2.0480 35 1 1.6843 4.1380 4.3977 36 1 4.6542 2.5426 -1.7198 37 1 6.4364 0.8217 -0.9367 38 1 5.9950 -0.9628 -1.0851 39 1 6.5956 2.1534 -2.8476 40 1 7.0011 1.1947 -4.2913 41 1 5.4187 2.0019 -4.1744 42 1 3.7568 -1.7240 -2.9579 43 1 3.6992 -3.7432 -4.3661 44 1 5.4968 -4.1588 -5.9967 45 1 7.3475 -2.5508 -6.2255 46 1 7.4004 -0.5270 -4.8237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619710942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:33 Heat of formation + Delta-G solvation = -49.634731 kcal Electronic energy + Delta-G solvation = -27950.957603 eV Core-core repulsion = 24160.074276 eV Total energy + Delta-G solvation = -3790.883327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.91334 -38.66966 -38.24495 -37.70735 -36.86713 -34.64062 -33.95863 -31.90863 -31.43765 -30.96454 -29.29209 -28.67467 -24.71016 -24.00472 -23.67953 -23.39627 -22.74587 -20.62441 -20.35059 -18.90738 -18.53988 -18.33942 -17.72792 -17.37181 -16.77839 -16.17800 -16.03735 -15.59164 -15.28272 -15.08072 -14.76858 -14.73241 -14.51345 -14.30453 -14.01698 -13.81630 -13.64552 -13.46014 -13.37122 -13.16584 -13.14524 -13.03424 -12.99374 -12.82601 -12.80211 -12.79030 -12.57285 -12.23691 -12.13403 -11.88081 -11.81047 -11.62441 -11.50335 -11.13007 -10.56719 -10.03917 -9.82786 -9.77212 -9.39906 -8.17963 -6.27253 -0.36627 0.46068 0.55229 1.37939 1.40899 1.51829 1.97836 2.41112 2.57329 2.70352 3.09299 3.13314 3.36373 3.63359 3.65190 3.77447 3.86483 3.99343 4.10911 4.21976 4.28134 4.36159 4.46657 4.51910 4.63674 4.69271 4.72191 4.85188 4.88336 4.92382 4.95433 4.98059 5.17603 5.17787 5.20723 5.23169 5.25289 5.28943 5.48051 5.57871 5.65194 5.68269 5.74890 5.75482 5.87791 6.08034 6.15628 6.16759 6.80835 7.40543 8.90038 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.021806 B = 0.003082 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.736861 B = 9083.155306 C = 9533.034160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.124 3.876 3 N -0.994 5.994 4 C 0.274 3.726 5 C -0.538 4.538 6 H 0.055 0.945 7 C 0.012 3.988 8 N -0.925 5.925 9 Si 0.950 3.050 10 H -0.270 1.270 11 H -0.271 1.271 12 H -0.282 1.282 13 S 2.796 3.204 14 O -1.004 7.004 15 O -1.010 7.010 16 N -1.089 6.089 17 C 0.077 3.923 18 H 0.134 0.866 19 C -0.153 4.153 20 C -0.094 4.094 21 C -0.120 4.120 22 C -0.056 4.056 23 C -0.139 4.139 24 C -0.125 4.125 25 C -0.132 4.132 26 C -0.123 4.123 27 C -0.122 4.122 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.037 0.963 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.014 0.986 34 H 0.031 0.969 35 H 0.266 0.734 36 H 0.421 0.579 37 H 0.112 0.888 38 H 0.115 0.885 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.120 0.880 43 H 0.136 0.864 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.978 -14.483 -14.999 24.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.001 4.001 3 N -0.835 5.835 4 C 0.150 3.850 5 C -0.577 4.577 6 H 0.073 0.927 7 C -0.187 4.187 8 N -0.565 5.565 9 Si 0.776 3.224 10 H -0.195 1.195 11 H -0.196 1.196 12 H -0.208 1.208 13 S 2.804 3.196 14 O -0.987 6.987 15 O -0.994 6.994 16 N -0.847 5.847 17 C -0.031 4.031 18 H 0.152 0.848 19 C -0.192 4.192 20 C -0.097 4.097 21 C -0.177 4.177 22 C -0.056 4.056 23 C -0.157 4.157 24 C -0.143 4.143 25 C -0.150 4.150 26 C -0.141 4.141 27 C -0.139 4.139 28 H 0.106 0.894 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.032 0.968 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.256 0.744 37 H 0.131 0.869 38 H 0.134 0.866 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.072 0.928 42 H 0.138 0.862 43 H 0.154 0.846 44 H 0.159 0.841 45 H 0.162 0.838 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.284 -14.023 -15.381 23.676 hybrid contribution -0.514 0.976 0.846 1.390 sum 10.770 -13.047 -14.536 22.305 Atomic orbital electron populations 1.22242 0.96693 1.02598 1.01554 1.21300 0.94737 0.80932 1.03106 1.57613 1.79062 1.24033 1.22802 1.18605 0.95535 0.90439 0.80374 1.21885 0.97317 1.31994 1.06510 0.92676 1.25684 0.99991 0.96654 0.96411 1.70010 1.30926 1.41691 1.13891 0.85619 0.80200 0.78248 0.78337 1.19491 1.19628 1.20782 1.01306 0.73400 0.72099 0.72788 1.93527 1.71392 1.76300 1.57499 1.93579 1.86222 1.33422 1.86219 1.55401 1.28218 1.14098 1.86980 1.21719 0.93331 0.83225 1.04828 0.84824 1.23780 0.97236 1.04294 0.93885 1.20759 1.02384 0.95511 0.91001 1.21392 1.00811 0.94447 1.01013 1.19142 0.95545 0.94049 0.96867 1.21259 0.98431 0.95177 1.00827 1.21397 0.99493 0.97318 0.96068 1.21480 0.94461 1.00287 0.98741 1.21454 0.99109 0.94085 0.99414 1.21204 0.98528 0.98385 0.95822 0.89427 0.92897 0.94389 0.89580 0.89351 0.96753 0.95136 0.92549 0.74350 0.86946 0.86646 0.91088 0.89912 0.92813 0.86188 0.84583 0.84055 0.83838 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.86 9.83 71.98 0.71 -5.16 16 2 C 0.12 4.07 6.09 86.38 0.53 4.60 16 3 N -0.99 -40.19 2.86 -519.86 -1.48 -41.68 16 4 C 0.27 13.64 5.12 85.64 0.44 14.08 16 5 C -0.54 -30.03 8.41 25.60 0.22 -29.81 16 6 H 0.06 3.10 6.89 -2.91 -0.02 3.08 16 7 C 0.01 0.66 5.46 84.65 0.46 1.12 16 8 N -0.92 -53.99 13.29 21.45 0.28 -53.70 16 9 Si 0.95 44.81 29.54 68.60 2.03 46.83 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 13 S 2.80 110.77 6.03 -56.49 -0.34 110.43 16 14 O -1.00 -41.35 16.87 -128.00 -2.16 -43.51 16 15 O -1.01 -49.47 17.11 -128.00 -2.19 -51.66 16 16 N -1.09 -31.79 5.74 -169.38 -0.97 -32.76 16 17 C 0.08 1.86 5.80 44.99 0.26 2.12 16 18 H 0.13 3.17 4.84 -2.39 -0.01 3.16 16 19 C -0.15 -2.91 9.81 30.62 0.30 -2.61 16 20 C -0.09 -1.90 2.55 -52.90 -0.14 -2.04 16 21 C -0.12 -2.15 8.86 71.98 0.64 -1.51 16 22 C -0.06 -1.13 5.45 -19.87 -0.11 -1.23 16 23 C -0.14 -2.86 9.39 22.27 0.21 -2.65 16 24 C -0.12 -2.19 10.05 22.27 0.22 -1.96 16 25 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 26 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 27 C -0.12 -2.06 9.27 22.27 0.21 -1.85 16 28 H 0.09 2.29 8.14 -2.39 -0.02 2.28 16 29 H 0.05 2.08 6.59 -2.39 -0.02 2.06 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.09 2.31 6.40 -2.39 -0.02 2.29 16 32 H 0.09 2.61 8.00 -2.39 -0.02 2.59 16 33 H 0.01 0.78 7.61 -2.39 -0.02 0.76 16 34 H 0.03 1.54 8.00 -2.39 -0.02 1.52 16 35 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 36 H 0.42 10.91 8.13 -96.75 -0.79 10.13 16 37 H 0.11 2.00 8.05 -2.39 -0.02 1.98 16 38 H 0.12 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.07 1.14 7.64 -2.39 -0.02 1.12 16 40 H 0.08 1.17 6.14 -2.39 -0.01 1.15 16 41 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.12 2.43 5.93 -2.91 -0.02 2.42 16 43 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 44 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 45 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 46 H 0.14 1.82 6.45 -2.91 -0.02 1.80 16 Total: -1.00 -72.71 384.63 -0.23 -72.94 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 0.21 Total: 23.39 kcal Atomic # 6 Polarization: -34.66 SS G_CDS: 4.39 Total: -30.27 kcal Atomic # 7 Polarization: -125.97 SS G_CDS: -2.17 Total: -128.14 kcal Atomic # 8 Polarization: -90.83 SS G_CDS: -4.35 Total: -95.17 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: 110.77 SS G_CDS: -0.34 Total: 110.43 kcal Total: -72.71 -0.23 -72.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619710942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.310 kcal (2) G-P(sol) polarization free energy of solvation -72.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds