Wall clock time and date at job start Tue Mar 31 2020 21:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46510 * 109.47315 * 2 1 4 4 C 1.46498 * 119.99421 * 275.00135 * 3 2 1 5 5 C 1.50703 * 109.47000 * 85.00166 * 4 3 2 6 6 H 1.07993 * 120.00124 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99829 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00116 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 119.99879 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46626 * 90.00604 * 9 7 5 11 11 H 1.48504 * 109.47227 * 209.99945 * 9 7 5 12 12 H 1.48491 * 109.47435 * 330.00541 * 9 7 5 13 13 S 1.65593 * 120.00221 * 94.99835 * 3 2 1 14 14 O 1.42101 * 106.40400 * 203.54295 * 13 3 2 15 15 O 1.42102 * 106.40479 * 336.46275 * 13 3 2 16 16 N 1.65599 * 107.21715 * 90.00211 * 13 3 2 17 17 C 1.46496 * 120.00144 * 65.00266 * 16 13 3 18 18 H 1.09005 * 115.54576 * 339.94072 * 17 16 13 19 19 C 1.52999 * 117.50309 * 125.61694 * 17 16 13 20 20 C 1.53000 * 117.50101 * 194.28033 * 17 16 13 21 21 C 1.52998 * 117.50257 * 145.01780 * 20 17 16 22 22 C 1.50702 * 117.49964 * 359.97438 * 20 17 16 23 23 C 1.38244 * 119.99513 * 65.18183 * 22 20 17 24 24 C 1.38230 * 119.99638 * 179.76656 * 23 22 20 25 25 C 1.38243 * 120.00365 * 0.50943 * 24 23 22 26 26 C 1.38239 * 119.99316 * 359.74646 * 25 24 23 27 27 C 1.38227 * 120.00404 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47329 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47179 * 59.99620 * 1 2 3 30 30 H 1.09003 * 109.46840 * 300.00121 * 1 2 3 31 31 H 1.09003 * 109.47426 * 119.99655 * 2 1 3 32 32 H 1.08994 * 109.47317 * 240.00182 * 2 1 3 33 33 H 1.08999 * 109.46936 * 204.99593 * 4 3 2 34 34 H 1.08994 * 109.47914 * 324.99894 * 4 3 2 35 35 H 0.97001 * 120.00148 * 179.97438 * 8 7 5 36 36 H 0.97005 * 120.00374 * 244.99671 * 16 13 3 37 37 H 1.09001 * 117.49696 * 214.98122 * 19 17 16 38 38 H 1.09005 * 117.49485 * 359.97359 * 19 17 16 39 39 H 1.09001 * 109.46888 * 60.00024 * 21 20 17 40 40 H 1.08998 * 109.47285 * 179.97438 * 21 20 17 41 41 H 1.09000 * 109.47178 * 300.00118 * 21 20 17 42 42 H 1.07995 * 119.99871 * 359.97438 * 23 22 20 43 43 H 1.07996 * 120.00249 * 180.22802 * 24 23 22 44 44 H 1.07991 * 120.00101 * 179.72484 * 25 24 23 45 45 H 1.08003 * 119.99536 * 179.97438 * 26 25 24 46 46 H 1.07997 * 120.00360 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1582 2.1086 -1.2640 5 6 0.8360 2.7288 -1.6356 6 1 -0.0227 2.5942 -0.9947 7 6 0.7225 3.4680 -2.7940 8 7 -0.4312 4.0097 -3.1181 9 14 2.2081 3.7014 -3.9022 10 1 2.2570 2.6043 -4.9018 11 1 2.1022 5.0059 -4.6039 12 1 3.4458 3.6794 -3.0822 13 16 2.4122 2.1203 1.4286 14 8 2.3057 3.5187 1.1997 15 8 1.6869 1.4417 2.4448 16 7 4.0144 1.8138 1.7136 17 6 5.0351 2.3525 0.8113 18 1 4.6823 2.6401 -0.1792 19 6 6.1570 3.1875 1.4318 20 6 6.4480 1.7753 0.9179 21 6 7.2579 1.6466 -0.3737 22 6 6.6834 0.6964 1.9435 23 6 6.0556 -0.5285 1.8146 24 6 6.2752 -1.5197 2.7527 25 6 7.1145 -1.2826 3.8253 26 6 7.7381 -0.0559 3.9569 27 6 7.5230 0.9333 3.0158 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 2.9079 2.8918 -1.1514 34 1 2.4689 1.4183 -2.0481 35 1 -0.5109 4.5301 -3.9328 36 1 4.2772 1.2776 2.4781 37 1 6.5426 4.0243 0.8494 38 1 6.1354 3.3364 2.5114 39 1 7.3823 2.6313 -0.8242 40 1 8.2371 1.2243 -0.1481 41 1 6.7314 0.9928 -1.0691 42 1 5.3961 -0.7120 0.9793 43 1 5.7877 -2.4779 2.6501 44 1 7.2826 -2.0555 4.5605 45 1 8.3934 0.1295 4.7951 46 1 8.0098 1.8918 3.1188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619710943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:36 Heat of formation + Delta-G solvation = -25.660978 kcal Electronic energy + Delta-G solvation = -28514.491422 eV Core-core repulsion = 24724.647675 eV Total energy + Delta-G solvation = -3789.843747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.09625 -37.70801 -36.64235 -36.18637 -35.19106 -32.88162 -32.51591 -31.06808 -30.54940 -30.09113 -28.13257 -27.22755 -23.30217 -22.97821 -22.57225 -21.78479 -21.73495 -19.71344 -19.04521 -17.32264 -17.15294 -17.00129 -16.50105 -16.16667 -15.31008 -15.05648 -14.71579 -14.51044 -14.28043 -13.78453 -13.58472 -13.51420 -13.28095 -13.04633 -12.91723 -12.85387 -12.55753 -12.35652 -12.18448 -11.92390 -11.76659 -11.69170 -11.50514 -11.40492 -11.31884 -11.28098 -11.07411 -11.03322 -10.99135 -10.51204 -10.22072 -10.19339 -9.91019 -9.44254 -9.18202 -9.07442 -8.72312 -8.59253 -8.16402 -6.08002 -4.06739 1.10747 1.17433 1.24210 3.24108 3.30207 3.30659 3.37913 3.57501 3.65200 4.08012 4.37092 4.41852 4.57144 4.72027 4.82596 4.85725 4.96311 4.99313 5.05933 5.13022 5.27400 5.32550 5.39918 5.41796 5.64131 5.66151 5.70341 5.76056 5.82367 5.88409 5.90169 5.94038 6.06829 6.09845 6.27435 6.33622 6.35755 6.36557 6.47223 6.63721 6.65638 6.82986 7.00687 7.05162 7.14135 7.44035 7.57788 8.49308 8.98168 9.50897 11.05316 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014142 B = 0.004240 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.395514 B = 6602.049864 C = 7440.968425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.136 3.864 3 N -0.987 5.987 4 C 0.227 3.773 5 C -0.528 4.528 6 H 0.082 0.918 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.781 3.219 14 O -0.958 6.958 15 O -0.990 6.990 16 N -1.104 6.104 17 C 0.110 3.890 18 H 0.138 0.862 19 C -0.177 4.177 20 C -0.100 4.100 21 C -0.110 4.110 22 C -0.043 4.043 23 C -0.107 4.107 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.111 4.111 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.029 0.971 35 H 0.264 0.736 36 H 0.410 0.590 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.105 -10.076 9.424 22.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.010 3.990 3 N -0.828 5.828 4 C 0.103 3.897 5 C -0.567 4.567 6 H 0.100 0.900 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.699 3.301 10 H -0.201 1.201 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.788 3.212 14 O -0.941 6.941 15 O -0.974 6.974 16 N -0.859 5.859 17 C 0.001 3.999 18 H 0.155 0.845 19 C -0.216 4.216 20 C -0.102 4.102 21 C -0.168 4.168 22 C -0.043 4.043 23 C -0.126 4.126 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.140 4.140 27 C -0.129 4.129 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.243 0.757 37 H 0.125 0.875 38 H 0.118 0.882 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 17.339 -9.334 9.677 21.941 hybrid contribution 1.014 -0.246 -0.543 1.176 sum 18.352 -9.581 9.134 22.628 Atomic orbital electron populations 1.22265 0.95964 1.00894 1.04135 1.20976 0.95172 0.81730 1.01087 1.57557 1.78567 1.23179 1.23513 1.19476 0.98322 0.90991 0.80883 1.21413 0.95759 1.31709 1.07848 0.90011 1.24880 0.95644 0.94977 0.97488 1.69891 1.24033 1.34349 1.25019 0.86932 0.83889 0.78063 0.81261 1.20135 1.20955 1.18994 1.02061 0.72320 0.73977 0.72793 1.93642 1.85047 1.30238 1.85167 1.93564 1.69677 1.76300 1.57871 1.55950 1.24915 1.67418 1.37575 1.21501 0.83691 1.00062 0.94638 0.84475 1.23728 1.02774 0.93146 1.01961 1.20676 0.98772 0.93743 0.97046 1.21323 0.99026 1.02525 0.93891 1.18993 0.96928 0.93787 0.94638 1.21091 0.99329 0.92738 0.99397 1.21179 0.98556 0.99234 0.94774 1.21158 0.97643 0.97238 0.98194 1.21124 1.00133 0.93674 0.99071 1.21031 0.98399 0.99366 0.94151 0.93095 0.89845 0.92762 0.91995 0.91118 0.95144 0.95323 0.92567 0.75697 0.87543 0.88220 0.91644 0.91944 0.91645 0.85720 0.85968 0.86263 0.86203 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 9.83 37.16 0.37 -2.75 16 2 C 0.14 2.27 6.09 -4.04 -0.02 2.25 16 3 N -0.99 -19.21 2.86 -115.66 -0.33 -19.55 16 4 C 0.23 5.06 4.12 -5.19 -0.02 5.04 16 5 C -0.53 -14.51 8.97 -34.44 -0.31 -14.82 16 6 H 0.08 2.47 7.13 -52.49 -0.37 2.10 16 7 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 8 N -0.89 -27.03 13.96 55.43 0.77 -26.26 16 9 Si 0.87 20.47 27.47 -169.99 -4.67 15.80 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -5.78 6.54 56.52 0.37 -5.41 16 13 S 2.78 54.03 6.05 -107.50 -0.65 53.38 16 14 O -0.96 -22.59 16.87 -57.17 -0.96 -23.56 16 15 O -0.99 -20.58 17.11 -57.17 -0.98 -21.56 16 16 N -1.10 -16.20 5.79 -4.89 -0.03 -16.23 16 17 C 0.11 1.48 6.13 -67.93 -0.42 1.07 16 18 H 0.14 1.98 6.73 -51.93 -0.35 1.63 16 19 C -0.18 -2.00 9.42 -26.69 -0.25 -2.25 16 20 C -0.10 -1.08 2.19 -155.62 -0.34 -1.42 16 21 C -0.11 -1.04 9.84 37.16 0.37 -0.67 16 22 C -0.04 -0.46 4.07 -104.62 -0.43 -0.88 16 23 C -0.11 -1.12 8.74 -39.58 -0.35 -1.47 16 24 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 25 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 26 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 27 C -0.11 -1.08 9.33 -39.59 -0.37 -1.45 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.72 6.59 -51.93 -0.34 1.38 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.89 7.61 -51.93 -0.40 0.50 16 32 H 0.07 1.04 8.00 -51.93 -0.42 0.63 16 33 H 0.03 0.68 5.34 -51.93 -0.28 0.41 16 34 H 0.03 0.60 7.43 -51.93 -0.39 0.21 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.41 5.39 7.23 -34.48 -0.25 5.14 16 37 H 0.11 1.07 8.05 -51.93 -0.42 0.65 16 38 H 0.10 1.09 8.01 -51.93 -0.42 0.68 16 39 H 0.06 0.57 7.90 -51.93 -0.41 0.16 16 40 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 45 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 46 H 0.12 1.03 7.93 -52.49 -0.42 0.62 16 LS Contribution 386.18 15.07 5.82 5.82 Total: -1.00 -33.89 386.18 -11.09 -44.97 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.99 Total: 7.06 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -3.06 Total: -19.89 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 0.41 Total: -62.03 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -1.94 Total: -45.12 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.80 kcal Atomic # 16 Polarization: 54.03 SS G_CDS: -0.65 Total: 53.38 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.89 -11.09 -44.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619710943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.314 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds