Wall clock time and date at job start Tue Mar 31 2020 21:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47293 * 2 1 4 4 C 1.46497 * 120.00114 * 274.05280 * 3 2 1 5 5 C 1.50702 * 109.46881 * 274.99621 * 4 3 2 6 6 H 1.08003 * 120.00093 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00151 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99929 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00246 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46878 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47069 * 119.99911 * 9 7 5 12 12 H 1.48501 * 109.47109 * 239.99798 * 9 7 5 13 13 S 1.65601 * 119.99747 * 94.04616 * 3 2 1 14 14 O 1.42095 * 106.40252 * 156.21157 * 13 3 2 15 15 O 1.42107 * 106.40018 * 23.29788 * 13 3 2 16 16 N 1.65594 * 107.22107 * 269.75664 * 13 3 2 17 17 C 1.46502 * 120.00105 * 294.24782 * 16 13 3 18 18 H 1.09003 * 115.55887 * 356.00065 * 17 16 13 19 19 C 1.53000 * 117.50063 * 141.69209 * 17 16 13 20 20 C 1.52999 * 60.03006 * 107.50035 * 19 17 16 21 21 C 1.53003 * 117.49788 * 252.46994 * 20 19 17 22 22 C 1.50702 * 117.50093 * 107.48029 * 20 19 17 23 23 C 1.38243 * 119.99478 * 293.76689 * 22 20 19 24 24 C 1.38238 * 119.99273 * 179.74591 * 23 22 20 25 25 C 1.38233 * 120.00314 * 0.54280 * 24 23 22 26 26 C 1.38239 * 119.99986 * 359.70714 * 25 24 23 27 27 C 1.38232 * 119.99902 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.47419 * 64.94503 * 1 2 3 29 29 H 1.09000 * 109.47531 * 184.94779 * 1 2 3 30 30 H 1.09002 * 109.47579 * 304.94751 * 1 2 3 31 31 H 1.09005 * 109.47194 * 240.00320 * 2 1 3 32 32 H 1.08999 * 109.47194 * 120.00370 * 2 1 3 33 33 H 1.08992 * 109.47278 * 34.99321 * 4 3 2 34 34 H 1.08995 * 109.47130 * 155.00181 * 4 3 2 35 35 H 0.96996 * 120.00261 * 180.02562 * 8 7 5 36 36 H 0.97000 * 120.00274 * 114.24104 * 16 13 3 37 37 H 1.08988 * 117.49760 * 359.97438 * 19 17 16 38 38 H 1.08997 * 117.49322 * 215.00011 * 19 17 16 39 39 H 1.09002 * 109.46905 * 8.61602 * 21 20 19 40 40 H 1.09004 * 109.46648 * 128.60776 * 21 20 19 41 41 H 1.08989 * 109.47223 * 248.61448 * 21 20 19 42 42 H 1.07995 * 120.00353 * 359.97438 * 23 22 20 43 43 H 1.08002 * 119.99692 * 180.27623 * 24 23 22 44 44 H 1.08000 * 120.00391 * 179.72699 * 25 24 23 45 45 H 1.07995 * 119.99919 * 179.97438 * 26 25 24 46 46 H 1.08002 * 119.99949 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1780 2.1018 -1.2655 5 6 3.5240 1.7785 -1.8612 6 1 4.1934 1.1036 -1.3485 7 6 3.9010 2.3445 -3.0605 8 7 3.0861 3.1668 -3.6846 9 14 5.5692 1.9433 -3.7993 10 1 6.2913 1.0002 -2.9080 11 1 5.3825 1.3193 -5.1337 12 1 6.3601 3.1919 -3.9430 13 16 2.3897 2.1281 1.4306 14 8 3.3154 3.1593 1.1164 15 8 2.6670 1.0927 2.3636 16 7 1.0139 2.8807 1.9624 17 6 0.4489 3.9975 1.2010 18 1 1.0283 4.3170 0.3347 19 6 -1.0754 4.0865 1.1033 20 6 -0.3069 5.0753 1.9822 21 6 -0.4153 4.9047 3.4988 22 6 -0.1929 6.4968 1.4947 23 6 0.5328 6.7796 0.3525 24 6 0.6329 8.0828 -0.0976 25 6 0.0170 9.1045 0.6006 26 6 -0.7043 8.8223 1.7457 27 6 -0.8091 7.5184 2.1927 28 1 -0.3634 0.4352 -0.9310 29 1 -0.3634 -1.0238 0.0886 30 1 -0.3634 0.5887 0.8423 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.3923 1.7990 -1.9576 34 1 2.1091 3.1743 -1.0842 35 1 3.3511 3.5646 -4.5285 36 1 0.5820 2.5821 2.7780 37 1 -1.6578 3.3139 1.6051 38 1 -1.4988 4.4642 0.1726 39 1 -0.9316 3.9713 3.7233 40 1 0.5838 4.8810 3.9340 41 1 -0.9752 5.7399 3.9193 42 1 1.0182 5.9820 -0.1902 43 1 1.1961 8.3032 -0.9924 44 1 0.0989 10.1232 0.2515 45 1 -1.1852 9.6205 2.2914 46 1 -1.3723 7.2980 3.0875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619710945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:42 Heat of formation + Delta-G solvation = -29.231823 kcal Electronic energy + Delta-G solvation = -28279.783899 eV Core-core repulsion = 24489.785308 eV Total energy + Delta-G solvation = -3789.998591 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.95862 -37.66398 -36.63212 -36.04315 -35.17633 -32.82177 -32.66499 -31.01049 -30.03394 -29.97662 -28.41348 -26.60531 -23.15224 -23.09738 -22.64366 -21.82662 -21.65767 -19.41701 -19.02514 -17.58853 -16.96348 -16.59626 -16.23902 -16.07772 -15.28846 -15.07028 -14.64849 -14.38434 -14.09813 -13.83441 -13.68867 -13.41346 -13.34302 -12.96375 -12.78491 -12.54633 -12.31290 -12.12407 -12.06302 -12.00718 -11.68351 -11.64751 -11.60782 -11.35183 -11.32155 -11.02454 -10.96198 -10.91227 -10.89675 -10.50215 -10.40054 -10.14876 -9.98488 -9.75394 -8.91920 -8.86047 -8.49242 -8.42832 -8.08424 -6.08082 -4.11409 1.17942 1.37722 1.46188 3.30356 3.38307 3.41767 3.45578 3.62364 4.04180 4.13042 4.44022 4.53623 4.62465 4.82700 4.87649 5.03123 5.03854 5.09515 5.21596 5.25196 5.32138 5.43347 5.49572 5.58592 5.68938 5.71752 5.73918 5.76532 5.79660 5.87790 6.00352 6.06733 6.09741 6.13703 6.27957 6.34120 6.52173 6.58673 6.60429 6.62232 6.69281 7.05077 7.08794 7.23461 7.40002 7.61694 7.90184 8.19215 8.91260 9.54045 11.00440 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010366 B = 0.004477 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.414895 B = 6253.321026 C = 7965.158499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.118 3.882 3 N -0.989 5.989 4 C 0.258 3.742 5 C -0.527 4.527 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.282 1.282 13 S 2.780 3.220 14 O -0.961 6.961 15 O -0.997 6.997 16 N -1.102 6.102 17 C 0.109 3.891 18 H 0.143 0.857 19 C -0.169 4.169 20 C -0.103 4.103 21 C -0.114 4.114 22 C -0.040 4.040 23 C -0.114 4.114 24 C -0.112 4.112 25 C -0.128 4.128 26 C -0.123 4.123 27 C -0.117 4.117 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.036 0.964 34 H 0.034 0.966 35 H 0.263 0.737 36 H 0.408 0.592 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.130 0.870 43 H 0.125 0.875 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.143 5.326 10.638 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 N -0.831 5.831 4 C 0.136 3.864 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.208 1.208 13 S 2.788 3.212 14 O -0.944 6.944 15 O -0.982 6.982 16 N -0.856 5.856 17 C 0.000 4.000 18 H 0.160 0.840 19 C -0.208 4.208 20 C -0.105 4.105 21 C -0.171 4.171 22 C -0.040 4.040 23 C -0.132 4.132 24 C -0.130 4.130 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.135 4.135 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.241 0.759 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.137 0.863 45 H 0.136 0.864 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.169 5.475 10.743 16.436 hybrid contribution 0.277 -0.204 -0.432 0.552 sum -10.893 5.271 10.311 15.898 Atomic orbital electron populations 1.22235 0.97188 1.01189 1.02187 1.21139 0.93067 0.83146 1.03498 1.57700 1.80923 1.21489 1.22989 1.19039 0.97358 0.90977 0.78983 1.21532 1.01659 1.27815 1.05672 0.92128 1.24904 0.97375 0.94820 0.96788 1.69916 1.36146 1.30564 1.16837 0.86483 0.84039 0.78368 0.78821 1.19649 1.20995 1.20822 1.02024 0.73280 0.73157 0.72763 1.93637 1.58840 1.57878 1.84010 1.93537 1.83765 1.57629 1.63226 1.55895 1.48740 1.44772 1.36177 1.21605 0.93184 0.88554 0.96653 0.83966 1.23680 0.95056 1.00525 1.01581 1.20665 1.06312 0.88904 0.94645 1.21309 1.02290 1.01771 0.91732 1.19000 0.97305 0.92672 0.95067 1.21252 0.98257 0.97418 0.96287 1.21198 0.99161 0.92713 0.99886 1.21139 0.98477 0.99081 0.95918 1.21070 0.99717 0.96348 0.96951 1.20933 1.00211 0.92360 1.00016 0.91991 0.92369 0.93282 0.89672 0.90706 0.94591 0.94806 0.92776 0.75925 0.88047 0.87769 0.92171 0.91724 0.91703 0.85258 0.85746 0.86350 0.86372 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 37.15 0.38 -1.94 16 2 C 0.12 2.01 6.39 -4.04 -0.03 1.98 16 3 N -0.99 -19.84 2.82 -115.67 -0.33 -20.17 16 4 C 0.26 6.20 5.10 -5.19 -0.03 6.17 16 5 C -0.53 -14.47 9.38 -34.44 -0.32 -14.80 16 6 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -25.38 13.29 55.43 0.74 -24.65 16 9 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 S 2.78 54.43 6.09 -107.50 -0.65 53.78 16 14 O -0.96 -22.82 16.79 -57.17 -0.96 -23.78 16 15 O -1.00 -20.57 16.69 -57.17 -0.95 -21.53 16 16 N -1.10 -16.20 5.81 -4.86 -0.03 -16.23 16 17 C 0.11 1.57 5.81 -67.89 -0.39 1.18 16 18 H 0.14 2.37 4.91 -51.93 -0.26 2.12 16 19 C -0.17 -1.97 9.79 -26.73 -0.26 -2.23 16 20 C -0.10 -1.26 2.57 -155.62 -0.40 -1.66 16 21 C -0.11 -1.16 8.78 37.16 0.33 -0.83 16 22 C -0.04 -0.52 5.47 -104.62 -0.57 -1.10 16 23 C -0.11 -1.63 9.38 -39.58 -0.37 -2.00 16 24 C -0.11 -1.44 10.05 -39.58 -0.40 -1.84 16 25 C -0.13 -1.44 10.05 -39.58 -0.40 -1.84 16 26 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 27 C -0.12 -1.33 9.29 -39.59 -0.37 -1.69 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.49 8.10 -51.93 -0.42 1.07 16 32 H 0.07 1.22 6.93 -51.93 -0.36 0.86 16 33 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 34 H 0.03 0.85 6.55 -51.93 -0.34 0.51 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.41 4.88 7.98 -34.47 -0.28 4.60 16 37 H 0.10 1.01 8.05 -51.94 -0.42 0.60 16 38 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.06 0.52 7.62 -51.93 -0.40 0.12 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.57 6.05 -51.94 -0.31 0.25 16 42 H 0.13 1.99 5.93 -52.49 -0.31 1.68 16 43 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 45 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.12 1.12 6.32 -52.49 -0.33 0.79 16 LS Contribution 387.71 15.07 5.84 5.84 Total: -1.00 -32.90 387.71 -11.46 -44.36 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.77 Total: 6.42 kcal Atomic # 6 Polarization: -17.32 SS G_CDS: -3.33 Total: -20.64 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.38 Total: -61.05 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -1.91 Total: -45.31 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 54.43 SS G_CDS: -0.65 Total: 53.78 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.90 -11.46 -44.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619710945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.131 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds