Wall clock time and date at job start Tue Mar 31 2020 21:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.47293 * 2 1 4 4 C 1.46497 * 120.00114 * 274.05280 * 3 2 1 5 5 C 1.50702 * 109.46881 * 274.99621 * 4 3 2 6 6 H 1.08003 * 120.00093 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00151 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99929 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00246 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46878 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47069 * 119.99911 * 9 7 5 12 12 H 1.48501 * 109.47109 * 239.99798 * 9 7 5 13 13 S 1.65601 * 119.99747 * 94.04616 * 3 2 1 14 14 O 1.42095 * 106.40252 * 156.21157 * 13 3 2 15 15 O 1.42107 * 106.40018 * 23.29788 * 13 3 2 16 16 N 1.65594 * 107.22107 * 269.75664 * 13 3 2 17 17 C 1.46502 * 120.00105 * 294.24782 * 16 13 3 18 18 H 1.09003 * 115.55887 * 356.00065 * 17 16 13 19 19 C 1.53000 * 117.50063 * 141.69209 * 17 16 13 20 20 C 1.52999 * 60.03006 * 107.50035 * 19 17 16 21 21 C 1.53003 * 117.49788 * 252.46994 * 20 19 17 22 22 C 1.50702 * 117.50093 * 107.48029 * 20 19 17 23 23 C 1.38243 * 119.99478 * 293.76689 * 22 20 19 24 24 C 1.38238 * 119.99273 * 179.74591 * 23 22 20 25 25 C 1.38233 * 120.00314 * 0.54280 * 24 23 22 26 26 C 1.38239 * 119.99986 * 359.70714 * 25 24 23 27 27 C 1.38232 * 119.99902 * 0.02562 * 26 25 24 28 28 H 1.09005 * 109.47419 * 64.94503 * 1 2 3 29 29 H 1.09000 * 109.47531 * 184.94779 * 1 2 3 30 30 H 1.09002 * 109.47579 * 304.94751 * 1 2 3 31 31 H 1.09005 * 109.47194 * 240.00320 * 2 1 3 32 32 H 1.08999 * 109.47194 * 120.00370 * 2 1 3 33 33 H 1.08992 * 109.47278 * 34.99321 * 4 3 2 34 34 H 1.08995 * 109.47130 * 155.00181 * 4 3 2 35 35 H 0.96996 * 120.00261 * 180.02562 * 8 7 5 36 36 H 0.97000 * 120.00274 * 114.24104 * 16 13 3 37 37 H 1.08988 * 117.49760 * 359.97438 * 19 17 16 38 38 H 1.08997 * 117.49322 * 215.00011 * 19 17 16 39 39 H 1.09002 * 109.46905 * 8.61602 * 21 20 19 40 40 H 1.09004 * 109.46648 * 128.60776 * 21 20 19 41 41 H 1.08989 * 109.47223 * 248.61448 * 21 20 19 42 42 H 1.07995 * 120.00353 * 359.97438 * 23 22 20 43 43 H 1.08002 * 119.99692 * 180.27623 * 24 23 22 44 44 H 1.08000 * 120.00391 * 179.72699 * 25 24 23 45 45 H 1.07995 * 119.99919 * 179.97438 * 26 25 24 46 46 H 1.08002 * 119.99949 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1780 2.1018 -1.2655 5 6 3.5240 1.7785 -1.8612 6 1 4.1934 1.1036 -1.3485 7 6 3.9010 2.3445 -3.0605 8 7 3.0861 3.1668 -3.6846 9 14 5.5692 1.9433 -3.7993 10 1 6.2913 1.0002 -2.9080 11 1 5.3825 1.3193 -5.1337 12 1 6.3601 3.1919 -3.9430 13 16 2.3897 2.1281 1.4306 14 8 3.3154 3.1593 1.1164 15 8 2.6670 1.0927 2.3636 16 7 1.0139 2.8807 1.9624 17 6 0.4489 3.9975 1.2010 18 1 1.0283 4.3170 0.3347 19 6 -1.0754 4.0865 1.1033 20 6 -0.3069 5.0753 1.9822 21 6 -0.4153 4.9047 3.4988 22 6 -0.1929 6.4968 1.4947 23 6 0.5328 6.7796 0.3525 24 6 0.6329 8.0828 -0.0976 25 6 0.0170 9.1045 0.6006 26 6 -0.7043 8.8223 1.7457 27 6 -0.8091 7.5184 2.1927 28 1 -0.3634 0.4352 -0.9310 29 1 -0.3634 -1.0238 0.0886 30 1 -0.3634 0.5887 0.8423 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 1.3923 1.7990 -1.9576 34 1 2.1091 3.1743 -1.0842 35 1 3.3511 3.5646 -4.5285 36 1 0.5820 2.5821 2.7780 37 1 -1.6578 3.3139 1.6051 38 1 -1.4988 4.4642 0.1726 39 1 -0.9316 3.9713 3.7233 40 1 0.5838 4.8810 3.9340 41 1 -0.9752 5.7399 3.9193 42 1 1.0182 5.9820 -0.1902 43 1 1.1961 8.3032 -0.9924 44 1 0.0989 10.1232 0.2515 45 1 -1.1852 9.6205 2.2914 46 1 -1.3723 7.2980 3.0875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619710945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:41 Heat of formation + Delta-G solvation = -50.233702 kcal Electronic energy + Delta-G solvation = -28280.694609 eV Core-core repulsion = 24489.785308 eV Total energy + Delta-G solvation = -3790.909300 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.92762 -38.68175 -38.28824 -37.67127 -36.89634 -34.72035 -33.97117 -31.94409 -31.53778 -30.99078 -29.26597 -28.49411 -24.94992 -24.01426 -23.65006 -23.29139 -22.79282 -20.52319 -20.33416 -19.18586 -18.39317 -18.28349 -17.75871 -17.47476 -16.78054 -16.26412 -16.04174 -15.59139 -15.39263 -15.08376 -14.80521 -14.70741 -14.54854 -14.32218 -13.90441 -13.75067 -13.68091 -13.46971 -13.40684 -13.31402 -13.15977 -13.09638 -13.00686 -12.78836 -12.76455 -12.68721 -12.57332 -12.19844 -12.18333 -11.89479 -11.81962 -11.72980 -11.59736 -11.15498 -10.59645 -10.03263 -9.81619 -9.80503 -9.41397 -8.20770 -6.31738 -0.38155 0.43306 0.51766 1.36575 1.39453 1.50613 1.96680 2.39099 2.56745 2.67666 3.08915 3.10469 3.34541 3.64111 3.67008 3.85093 3.87226 4.00669 4.09388 4.18518 4.27069 4.33303 4.47086 4.50441 4.60397 4.68250 4.72256 4.83711 4.89423 4.94660 4.96554 5.03698 5.12984 5.16391 5.17836 5.23153 5.25258 5.30509 5.42362 5.52823 5.61977 5.66245 5.71722 5.74207 5.88914 6.11198 6.13720 6.15458 6.76305 7.36901 8.86652 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010366 B = 0.004477 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.414895 B = 6253.321026 C = 7965.158499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.108 3.892 3 N -0.994 5.994 4 C 0.277 3.723 5 C -0.549 4.549 6 H 0.049 0.951 7 C 0.016 3.984 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.271 1.271 11 H -0.269 1.269 12 H -0.280 1.280 13 S 2.796 3.204 14 O -1.010 7.010 15 O -1.008 7.008 16 N -1.080 6.080 17 C 0.074 3.926 18 H 0.109 0.891 19 C -0.146 4.146 20 C -0.090 4.090 21 C -0.116 4.116 22 C -0.056 4.056 23 C -0.144 4.144 24 C -0.131 4.131 25 C -0.129 4.129 26 C -0.119 4.119 27 C -0.116 4.116 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.029 0.971 34 H 0.015 0.985 35 H 0.267 0.733 36 H 0.424 0.576 37 H 0.128 0.872 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.122 0.878 44 H 0.143 0.857 45 H 0.152 0.848 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.223 5.653 12.410 19.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.017 4.017 3 N -0.835 5.835 4 C 0.154 3.846 5 C -0.588 4.588 6 H 0.068 0.932 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.196 1.196 11 H -0.194 1.194 12 H -0.206 1.206 13 S 2.804 3.196 14 O -0.993 6.993 15 O -0.992 6.992 16 N -0.839 5.839 17 C -0.034 4.034 18 H 0.127 0.873 19 C -0.186 4.186 20 C -0.093 4.093 21 C -0.173 4.173 22 C -0.056 4.056 23 C -0.163 4.163 24 C -0.149 4.149 25 C -0.147 4.147 26 C -0.137 4.137 27 C -0.134 4.134 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.047 0.953 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.261 0.739 37 H 0.147 0.853 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.119 0.881 43 H 0.140 0.860 44 H 0.161 0.839 45 H 0.170 0.830 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -13.261 5.771 12.529 19.135 hybrid contribution 0.885 -0.246 -0.949 1.321 sum -12.376 5.525 11.580 17.827 Atomic orbital electron populations 1.22163 0.94255 1.03261 1.02273 1.21393 0.95586 0.81325 1.03396 1.57574 1.81525 1.22736 1.21664 1.18560 0.95583 0.90252 0.80254 1.21867 1.03010 1.27778 1.06145 0.93224 1.25667 1.00712 0.94732 0.97270 1.70001 1.37655 1.31175 1.17244 0.85602 0.79990 0.78170 0.78537 1.19574 1.19426 1.20624 1.01244 0.73563 0.72421 0.72338 1.93575 1.61553 1.59472 1.84713 1.93510 1.84461 1.58001 1.63229 1.55220 1.47579 1.44462 1.36646 1.21542 0.94814 0.89999 0.97080 0.87311 1.23747 0.92683 1.00494 1.01631 1.20800 1.04359 0.88087 0.96069 1.21406 1.02415 1.03854 0.89604 1.19184 0.97716 0.93783 0.94899 1.21224 0.99968 0.97437 0.97632 1.21338 1.00112 0.92918 1.00523 1.21453 0.97693 0.99627 0.95920 1.21504 0.98681 0.97053 0.96435 1.21260 0.99622 0.92091 1.00415 0.92943 0.89452 0.91940 0.90726 0.89863 0.95324 0.96707 0.92438 0.73877 0.85347 0.88049 0.90089 0.92681 0.89606 0.88136 0.85969 0.83907 0.83010 0.83367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.16 10.24 71.98 0.74 -3.42 16 2 C 0.11 3.68 6.39 86.38 0.55 4.23 16 3 N -0.99 -41.12 2.82 -519.86 -1.47 -42.58 16 4 C 0.28 13.97 5.10 85.63 0.44 14.41 16 5 C -0.55 -31.29 9.38 25.60 0.24 -31.05 16 6 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 7 C 0.02 0.90 5.46 84.65 0.46 1.37 16 8 N -0.92 -53.82 13.29 21.45 0.28 -53.54 16 9 Si 0.95 45.09 29.54 68.60 2.03 47.11 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 13 S 2.80 112.45 6.09 -56.49 -0.34 112.11 16 14 O -1.01 -50.67 16.79 -128.00 -2.15 -52.82 16 15 O -1.01 -41.52 16.69 -128.00 -2.14 -43.65 16 16 N -1.08 -31.57 5.81 -169.28 -0.98 -32.56 16 17 C 0.07 2.19 5.81 45.01 0.26 2.45 16 18 H 0.11 4.02 4.91 -2.39 -0.01 4.01 16 19 C -0.15 -3.22 9.79 30.59 0.30 -2.92 16 20 C -0.09 -2.12 2.57 -52.90 -0.14 -2.26 16 21 C -0.12 -2.03 8.78 71.98 0.63 -1.39 16 22 C -0.06 -1.43 5.47 -19.86 -0.11 -1.53 16 23 C -0.14 -4.41 9.38 22.27 0.21 -4.21 16 24 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 25 C -0.13 -2.72 10.05 22.27 0.22 -2.50 16 26 C -0.12 -2.19 10.05 22.27 0.22 -1.97 16 27 C -0.12 -2.34 9.29 22.27 0.21 -2.13 16 28 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 2.66 8.10 -2.38 -0.02 2.64 16 32 H 0.08 2.67 6.93 -2.39 -0.02 2.66 16 33 H 0.03 1.47 8.11 -2.39 -0.02 1.45 16 34 H 0.02 0.81 6.55 -2.39 -0.02 0.79 16 35 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 36 H 0.42 9.43 7.98 -96.75 -0.77 8.66 16 37 H 0.13 2.12 8.05 -2.39 -0.02 2.11 16 38 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.08 1.08 7.62 -2.39 -0.02 1.06 16 40 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.15 6.05 -2.39 -0.01 1.13 16 42 H 0.10 3.56 5.93 -2.91 -0.02 3.54 16 43 H 0.12 3.16 8.06 -2.91 -0.02 3.13 16 44 H 0.14 2.24 8.06 -2.91 -0.02 2.21 16 45 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 46 H 0.15 2.11 6.32 -2.91 -0.02 2.10 16 Total: -1.00 -73.90 387.71 -0.09 -73.99 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.22 Total: 26.16 kcal Atomic # 6 Polarization: -38.70 SS G_CDS: 4.46 Total: -34.23 kcal Atomic # 7 Polarization: -126.51 SS G_CDS: -2.17 Total: -128.68 kcal Atomic # 8 Polarization: -92.18 SS G_CDS: -4.29 Total: -96.47 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: 112.45 SS G_CDS: -0.34 Total: 112.11 kcal Total: -73.90 -0.09 -73.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619710945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.761 kcal (2) G-P(sol) polarization free energy of solvation -73.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds