Wall clock time and date at job start Tue Mar 31 2020 20:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47036 * 2 1 4 4 C 1.50704 * 109.47375 * 239.99438 * 2 1 3 5 5 H 1.07993 * 119.99944 * 242.68543 * 4 2 1 6 6 C 1.37884 * 119.99590 * 62.68333 * 4 2 1 7 7 N 1.31514 * 119.99997 * 16.73825 * 6 4 2 8 8 Si 1.86800 * 119.99801 * 196.73721 * 6 4 2 9 9 H 1.48498 * 109.47120 * 64.06031 * 8 6 4 10 10 H 1.48499 * 109.47023 * 184.06262 * 8 6 4 11 11 H 1.48504 * 109.46942 * 304.05830 * 8 6 4 12 12 N 1.46502 * 109.46941 * 119.99590 * 2 1 3 13 13 C 1.46501 * 119.99889 * 66.15117 * 12 2 1 14 14 S 1.65599 * 120.00025 * 246.15084 * 12 2 1 15 15 O 1.42096 * 106.40314 * 147.92328 * 14 12 2 16 16 O 1.42103 * 106.40300 * 14.99840 * 14 12 2 17 17 N 1.65600 * 107.21656 * 261.45969 * 14 12 2 18 18 C 1.46502 * 120.00134 * 57.07268 * 17 14 12 19 19 C 1.50702 * 112.84923 * 271.44662 * 18 17 14 20 20 C 1.38232 * 120.00146 * 163.15938 * 19 18 17 21 21 C 1.38237 * 119.99965 * 179.78660 * 20 19 18 22 22 C 1.38233 * 119.99982 * 0.47098 * 21 20 19 23 23 C 1.38231 * 119.99934 * 359.75985 * 22 21 20 24 24 C 1.38236 * 120.00284 * 0.02888 * 23 22 21 25 25 C 1.53779 * 113.61501 * 140.14198 * 18 17 14 26 26 C 1.53784 * 87.08401 * 270.88147 * 25 18 17 27 27 C 1.53783 * 113.61536 * 42.64248 * 18 17 14 28 28 H 1.09000 * 109.47558 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47731 * 300.00537 * 1 2 3 30 30 H 1.09011 * 109.47285 * 60.00605 * 1 2 3 31 31 H 0.96998 * 119.99720 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47162 * 269.99886 * 13 12 2 33 33 H 1.08998 * 109.47272 * 30.00473 * 13 12 2 34 34 H 1.08998 * 109.46967 * 149.99813 * 13 12 2 35 35 H 0.96997 * 120.00250 * 237.06665 * 17 14 12 36 36 H 1.08001 * 119.99580 * 0.02562 * 20 19 18 37 37 H 1.07998 * 119.99628 * 180.24956 * 21 20 19 38 38 H 1.07996 * 119.99696 * 179.78816 * 22 21 20 39 39 H 1.08005 * 120.00163 * 180.02562 * 23 22 21 40 40 H 1.08003 * 120.00425 * 179.97438 * 24 23 22 41 41 H 1.09002 * 113.61801 * 25.42965 * 25 18 17 42 42 H 1.08996 * 113.61729 * 156.33573 * 25 18 17 43 43 H 1.08988 * 113.61763 * 220.02224 * 26 25 18 44 44 H 1.09000 * 113.60898 * 89.11192 * 26 25 18 45 45 H 1.08997 * 113.61502 * 203.66334 * 27 18 17 46 46 H 1.08998 * 113.61451 * 334.48446 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6170 -1.6132 -1.1318 6 6 1.7455 -0.2081 -2.4820 7 7 1.3326 1.0336 -2.6133 8 14 1.9433 -1.2912 -3.9910 9 1 0.9873 -2.4250 -3.9154 10 1 1.6689 -0.4929 -5.2127 11 1 3.3313 -1.8167 -4.0446 12 7 2.0182 -0.6905 1.1962 13 6 1.7787 -2.1263 1.3623 14 16 2.8409 0.1518 2.3607 15 8 2.5293 -0.4688 3.6004 16 8 2.6070 1.5290 2.1004 17 7 4.4563 -0.1051 2.1023 18 6 5.0538 0.2320 0.8078 19 6 4.9839 -0.9021 -0.1821 20 6 5.1742 -0.6566 -1.5291 21 6 5.1145 -1.6976 -2.4366 22 6 4.8548 -2.9826 -1.9982 23 6 4.6598 -3.2274 -0.6518 24 6 4.7239 -2.1871 0.2563 25 6 6.4491 0.8687 0.9205 26 6 5.7355 2.2284 1.0052 27 6 4.5723 1.5771 0.2387 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.1312 1.3871 -3.4938 32 1 0.8332 -2.2791 1.8825 33 1 1.7360 -2.6031 0.3831 34 1 2.5889 -2.5648 1.9448 35 1 5.0070 -0.4787 2.8080 36 1 5.3734 0.3480 -1.8719 37 1 5.2672 -1.5063 -3.4885 38 1 4.8048 -3.7953 -2.7077 39 1 4.4574 -4.2315 -0.3092 40 1 4.5711 -2.3782 1.3082 41 1 6.9807 0.5971 1.8325 42 1 7.0570 0.7499 0.0236 43 1 6.2366 3.0199 0.4482 44 1 5.4773 2.5233 2.0223 45 1 4.6671 1.6518 -0.8446 46 1 3.5881 1.8764 0.5991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619749078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:46 Heat of formation + Delta-G solvation = -6.785140 kcal Electronic energy + Delta-G solvation = -30998.759264 eV Core-core repulsion = 27209.734035 eV Total energy + Delta-G solvation = -3789.025229 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.01383 -37.61248 -36.60936 -36.02431 -35.25493 -32.60266 -32.38348 -30.38169 -30.13221 -29.14724 -25.62175 -25.32915 -25.01102 -24.50878 -22.03816 -21.07238 -20.76667 -19.30412 -18.35545 -17.20265 -17.00090 -16.88039 -16.21487 -15.47617 -15.01557 -14.83071 -14.56442 -14.29748 -13.93678 -13.56957 -13.45238 -13.12381 -12.88798 -12.74095 -12.50366 -12.17611 -11.94456 -11.85718 -11.72524 -11.49624 -11.44527 -11.27665 -11.22768 -11.09550 -10.96506 -10.74087 -10.64155 -10.54015 -10.40976 -10.20626 -10.09807 -9.86113 -9.61811 -9.22461 -9.02304 -8.27981 -8.17324 -7.98591 -7.87913 -6.02902 -3.97635 1.25856 1.97963 2.07827 3.30466 3.37485 3.40620 3.48020 4.10090 4.34570 4.46726 4.86382 4.97240 5.03216 5.20961 5.23586 5.30442 5.36392 5.52211 5.54398 5.63460 5.69714 5.89732 5.98555 6.09630 6.13794 6.18493 6.21745 6.22200 6.37712 6.45588 6.56410 6.67241 6.69037 6.79157 6.82491 6.85410 6.96685 7.05941 7.10298 7.13978 7.19514 7.34699 7.49374 7.62989 7.75865 7.81803 8.03398 8.37358 9.04070 9.63412 11.05655 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011327 B = 0.007753 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.432151 B = 3610.599354 C = 4303.919991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.265 3.735 3 H 0.069 0.931 4 C -0.514 4.514 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.884 5.884 8 Si 0.861 3.139 9 H -0.284 1.284 10 H -0.297 1.297 11 H -0.254 1.254 12 N -0.981 5.981 13 C 0.109 3.891 14 S 2.781 3.219 15 O -1.003 7.003 16 O -0.976 6.976 17 N -1.110 6.110 18 C 0.199 3.801 19 C -0.057 4.057 20 C -0.076 4.076 21 C -0.106 4.106 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.102 4.102 25 C -0.128 4.128 26 C -0.138 4.138 27 C -0.164 4.164 28 H 0.034 0.966 29 H 0.013 0.987 30 H 0.071 0.929 31 H 0.260 0.740 32 H 0.039 0.961 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.408 0.592 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.100 0.900 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.472 -4.075 4.051 11.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.162 3.838 3 H 0.086 0.914 4 C -0.553 4.553 5 H 0.096 0.904 6 C -0.125 4.125 7 N -0.522 5.522 8 Si 0.690 3.310 9 H -0.210 1.210 10 H -0.223 1.223 11 H -0.179 1.179 12 N -0.824 5.824 13 C -0.038 4.038 14 S 2.790 3.210 15 O -0.987 6.987 16 O -0.959 6.959 17 N -0.866 5.866 18 C 0.110 3.890 19 C -0.059 4.059 20 C -0.095 4.095 21 C -0.124 4.124 22 C -0.141 4.141 23 C -0.141 4.141 24 C -0.121 4.121 25 C -0.167 4.167 26 C -0.176 4.176 27 C -0.201 4.201 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.241 0.759 36 H 0.134 0.866 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.118 0.882 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 8.916 -3.307 4.500 10.520 hybrid contribution 0.170 -1.154 -1.079 1.589 sum 9.086 -4.461 3.421 10.684 Atomic orbital electron populations 1.22032 0.99034 0.99366 0.99662 1.18817 0.90649 0.93652 0.80695 0.91382 1.21359 1.33763 1.10972 0.89205 0.90382 1.24739 0.95402 0.94116 0.98284 1.70018 1.45903 1.12758 1.23554 0.87208 0.79738 0.81244 0.82855 1.21046 1.22300 1.17890 1.57511 1.69237 1.17812 1.37852 1.21217 0.98853 0.81317 1.02382 1.01919 0.72516 0.73946 0.72582 1.93544 1.83234 1.78280 1.43663 1.93491 1.84689 1.32867 1.84849 1.55761 1.29074 1.81142 1.20669 1.19705 0.95548 0.92259 0.81528 1.19611 0.99028 0.93614 0.93659 1.20665 0.98391 0.98350 0.92057 1.20910 0.99788 0.93002 0.98681 1.20884 1.01112 0.96669 0.95456 1.20847 1.01550 0.98298 0.93410 1.20682 1.00198 0.92479 0.98715 1.23234 0.94806 0.96487 1.02201 1.22796 0.97632 0.96050 1.01074 1.23995 1.02678 0.92017 1.01433 0.94685 0.96767 0.91010 0.93067 0.94206 0.89839 0.93734 0.75902 0.86623 0.87180 0.87580 0.87299 0.87423 0.91432 0.89187 0.91592 0.90351 0.88181 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.10 37.15 0.34 -2.88 16 2 C 0.26 5.99 2.50 -69.08 -0.17 5.81 16 3 H 0.07 1.72 5.46 -51.93 -0.28 1.44 16 4 C -0.51 -11.78 6.06 -34.44 -0.21 -11.99 16 5 H 0.08 1.73 3.72 -52.49 -0.20 1.53 16 6 C 0.08 1.89 5.06 -17.82 -0.09 1.80 16 7 N -0.88 -23.14 12.37 55.43 0.69 -22.45 16 8 Si 0.86 19.15 28.93 -169.99 -4.92 14.23 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.25 -5.15 4.67 56.52 0.26 -4.89 16 12 N -0.98 -19.27 3.03 -115.86 -0.35 -19.62 16 13 C 0.11 1.89 8.32 59.85 0.50 2.39 16 14 S 2.78 53.00 5.79 -107.50 -0.62 52.37 16 15 O -1.00 -20.56 17.52 -57.17 -1.00 -21.56 16 16 O -0.98 -21.18 13.47 -57.17 -0.77 -21.95 16 17 N -1.11 -16.98 4.40 0.26 0.00 -16.97 16 18 C 0.20 3.08 1.34 -132.16 -0.18 2.90 16 19 C -0.06 -0.93 3.95 -104.62 -0.41 -1.34 16 20 C -0.08 -1.28 7.71 -39.58 -0.31 -1.58 16 21 C -0.11 -1.76 7.61 -39.58 -0.30 -2.06 16 22 C -0.12 -1.94 9.59 -39.59 -0.38 -2.32 16 23 C -0.12 -1.85 9.37 -39.58 -0.37 -2.23 16 24 C -0.10 -1.59 7.17 -39.58 -0.28 -1.87 16 25 C -0.13 -1.64 7.37 -25.92 -0.19 -1.83 16 26 C -0.14 -1.95 7.99 -25.91 -0.21 -2.16 16 27 C -0.16 -2.84 6.63 -25.91 -0.17 -3.02 16 28 H 0.03 0.75 7.83 -51.93 -0.41 0.34 16 29 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 1.77 6.98 -51.92 -0.36 1.40 16 31 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 1.49 6.51 -51.93 -0.34 1.16 16 34 H 0.04 0.67 6.85 -51.93 -0.36 0.32 16 35 H 0.41 5.10 8.96 -34.47 -0.31 4.79 16 36 H 0.12 1.89 6.33 -52.49 -0.33 1.56 16 37 H 0.11 1.77 7.39 -52.49 -0.39 1.38 16 38 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.11 1.41 8.06 -52.48 -0.42 0.98 16 40 H 0.11 1.54 6.21 -52.48 -0.33 1.22 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.07 7.91 -51.93 -0.41 0.66 16 43 H 0.07 0.83 8.14 -51.94 -0.42 0.41 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.10 1.79 6.05 -51.93 -0.31 1.47 16 46 H 0.12 2.52 3.39 -51.93 -0.18 2.35 16 LS Contribution 352.90 15.07 5.32 5.32 Total: -1.00 -28.47 352.90 -10.52 -38.99 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -6.43 Total: 12.01 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: -2.44 Total: -20.36 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.34 Total: -59.05 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -1.77 Total: -43.51 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -4.92 Total: 14.23 kcal Atomic # 16 Polarization: 53.00 SS G_CDS: -0.62 Total: 52.37 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.47 -10.52 -38.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619749078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.205 kcal (2) G-P(sol) polarization free energy of solvation -28.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds