Wall clock time and date at job start Tue Mar 31 2020 20:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47036 * 2 1 4 4 C 1.50704 * 109.47375 * 239.99438 * 2 1 3 5 5 H 1.07993 * 119.99944 * 242.68543 * 4 2 1 6 6 C 1.37884 * 119.99590 * 62.68333 * 4 2 1 7 7 N 1.31514 * 119.99997 * 16.73825 * 6 4 2 8 8 Si 1.86800 * 119.99801 * 196.73721 * 6 4 2 9 9 H 1.48498 * 109.47120 * 64.06031 * 8 6 4 10 10 H 1.48499 * 109.47023 * 184.06262 * 8 6 4 11 11 H 1.48504 * 109.46942 * 304.05830 * 8 6 4 12 12 N 1.46502 * 109.46941 * 119.99590 * 2 1 3 13 13 C 1.46501 * 119.99889 * 66.15117 * 12 2 1 14 14 S 1.65599 * 120.00025 * 246.15084 * 12 2 1 15 15 O 1.42096 * 106.40314 * 147.92328 * 14 12 2 16 16 O 1.42103 * 106.40300 * 14.99840 * 14 12 2 17 17 N 1.65600 * 107.21656 * 261.45969 * 14 12 2 18 18 C 1.46502 * 120.00134 * 57.07268 * 17 14 12 19 19 C 1.50702 * 112.84923 * 271.44662 * 18 17 14 20 20 C 1.38232 * 120.00146 * 163.15938 * 19 18 17 21 21 C 1.38237 * 119.99965 * 179.78660 * 20 19 18 22 22 C 1.38233 * 119.99982 * 0.47098 * 21 20 19 23 23 C 1.38231 * 119.99934 * 359.75985 * 22 21 20 24 24 C 1.38236 * 120.00284 * 0.02888 * 23 22 21 25 25 C 1.53779 * 113.61501 * 140.14198 * 18 17 14 26 26 C 1.53784 * 87.08401 * 270.88147 * 25 18 17 27 27 C 1.53783 * 113.61536 * 42.64248 * 18 17 14 28 28 H 1.09000 * 109.47558 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47731 * 300.00537 * 1 2 3 30 30 H 1.09011 * 109.47285 * 60.00605 * 1 2 3 31 31 H 0.96998 * 119.99720 * 179.97438 * 7 6 4 32 32 H 1.08992 * 109.47162 * 269.99886 * 13 12 2 33 33 H 1.08998 * 109.47272 * 30.00473 * 13 12 2 34 34 H 1.08998 * 109.46967 * 149.99813 * 13 12 2 35 35 H 0.96997 * 120.00250 * 237.06665 * 17 14 12 36 36 H 1.08001 * 119.99580 * 0.02562 * 20 19 18 37 37 H 1.07998 * 119.99628 * 180.24956 * 21 20 19 38 38 H 1.07996 * 119.99696 * 179.78816 * 22 21 20 39 39 H 1.08005 * 120.00163 * 180.02562 * 23 22 21 40 40 H 1.08003 * 120.00425 * 179.97438 * 24 23 22 41 41 H 1.09002 * 113.61801 * 25.42965 * 25 18 17 42 42 H 1.08996 * 113.61729 * 156.33573 * 25 18 17 43 43 H 1.08988 * 113.61763 * 220.02224 * 26 25 18 44 44 H 1.09000 * 113.60898 * 89.11192 * 26 25 18 45 45 H 1.08997 * 113.61502 * 203.66334 * 27 18 17 46 46 H 1.08998 * 113.61451 * 334.48446 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6170 -1.6132 -1.1318 6 6 1.7455 -0.2081 -2.4820 7 7 1.3326 1.0336 -2.6133 8 14 1.9433 -1.2912 -3.9910 9 1 0.9873 -2.4250 -3.9154 10 1 1.6689 -0.4929 -5.2127 11 1 3.3313 -1.8167 -4.0446 12 7 2.0182 -0.6905 1.1962 13 6 1.7787 -2.1263 1.3623 14 16 2.8409 0.1518 2.3607 15 8 2.5293 -0.4688 3.6004 16 8 2.6070 1.5290 2.1004 17 7 4.4563 -0.1051 2.1023 18 6 5.0538 0.2320 0.8078 19 6 4.9839 -0.9021 -0.1821 20 6 5.1742 -0.6566 -1.5291 21 6 5.1145 -1.6976 -2.4366 22 6 4.8548 -2.9826 -1.9982 23 6 4.6598 -3.2274 -0.6518 24 6 4.7239 -2.1871 0.2563 25 6 6.4491 0.8687 0.9205 26 6 5.7355 2.2284 1.0052 27 6 4.5723 1.5771 0.2387 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.1312 1.3871 -3.4938 32 1 0.8332 -2.2791 1.8825 33 1 1.7360 -2.6031 0.3831 34 1 2.5889 -2.5648 1.9448 35 1 5.0070 -0.4787 2.8080 36 1 5.3734 0.3480 -1.8719 37 1 5.2672 -1.5063 -3.4885 38 1 4.8048 -3.7953 -2.7077 39 1 4.4574 -4.2315 -0.3092 40 1 4.5711 -2.3782 1.3082 41 1 6.9807 0.5971 1.8325 42 1 7.0570 0.7499 0.0236 43 1 6.2366 3.0199 0.4482 44 1 5.4773 2.5233 2.0223 45 1 4.6671 1.6518 -0.8446 46 1 3.5881 1.8764 0.5991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619749078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:45 Heat of formation + Delta-G solvation = -24.319047 kcal Electronic energy + Delta-G solvation = -30999.519591 eV Core-core repulsion = 27209.734035 eV Total energy + Delta-G solvation = -3789.785557 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.24029 -38.86364 -38.17997 -37.67067 -36.86227 -34.30095 -33.77994 -31.58665 -31.37707 -30.89645 -27.06841 -26.96944 -26.51732 -25.72965 -23.24961 -22.57919 -22.22411 -20.64181 -19.75796 -18.65238 -18.54345 -18.18446 -17.98408 -16.99742 -16.44010 -16.10279 -16.07134 -15.62569 -15.22217 -15.13964 -14.85236 -14.59083 -14.41071 -14.12905 -13.82057 -13.57359 -13.56381 -13.34648 -13.24965 -13.14509 -12.92632 -12.80342 -12.74061 -12.61742 -12.33028 -12.31417 -12.21172 -11.95958 -11.82794 -11.69287 -11.61537 -11.39158 -11.06067 -10.88135 -10.30410 -10.15436 -9.55624 -9.40723 -9.19105 -7.93059 -5.89706 -0.25673 0.75745 0.85093 1.52875 1.58311 1.59719 2.00995 2.60693 2.63744 3.12006 3.41180 3.48824 3.74687 3.81523 3.96143 4.01865 4.08741 4.25766 4.35880 4.41313 4.48866 4.72005 4.78469 4.86034 4.88952 4.94072 4.95768 4.97594 5.03467 5.06886 5.13055 5.21479 5.26895 5.34342 5.36784 5.46876 5.51079 5.60997 5.64142 5.85601 5.91010 5.93049 5.97783 6.02089 6.14827 6.29607 6.42621 6.51828 7.17066 7.73402 9.15585 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011327 B = 0.007753 C = 0.006504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.432151 B = 3610.599354 C = 4303.919991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.272 3.728 3 H 0.039 0.961 4 C -0.492 4.492 5 H 0.090 0.910 6 C 0.039 3.961 7 N -0.919 5.919 8 Si 0.900 3.100 9 H -0.292 1.292 10 H -0.314 1.314 11 H -0.223 1.223 12 N -0.986 5.986 13 C 0.102 3.898 14 S 2.793 3.207 15 O -1.016 7.016 16 O -1.005 7.005 17 N -1.094 6.094 18 C 0.198 3.802 19 C -0.064 4.064 20 C -0.091 4.091 21 C -0.121 4.121 22 C -0.132 4.132 23 C -0.123 4.123 24 C -0.108 4.108 25 C -0.110 4.110 26 C -0.133 4.133 27 C -0.179 4.179 28 H 0.045 0.955 29 H 0.017 0.983 30 H 0.047 0.953 31 H 0.252 0.748 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.425 0.575 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.123 0.877 39 H 0.135 0.865 40 H 0.121 0.879 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.329 -6.260 4.978 13.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.167 3.833 3 H 0.057 0.943 4 C -0.531 4.531 5 H 0.108 0.892 6 C -0.160 4.160 7 N -0.559 5.559 8 Si 0.728 3.272 9 H -0.219 1.219 10 H -0.242 1.242 11 H -0.146 1.146 12 N -0.828 5.828 13 C -0.043 4.043 14 S 2.803 3.197 15 O -1.000 7.000 16 O -0.989 6.989 17 N -0.854 5.854 18 C 0.108 3.892 19 C -0.066 4.066 20 C -0.109 4.109 21 C -0.139 4.139 22 C -0.150 4.150 23 C -0.140 4.140 24 C -0.127 4.127 25 C -0.148 4.148 26 C -0.171 4.171 27 C -0.217 4.217 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.261 0.739 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.141 0.859 39 H 0.152 0.848 40 H 0.139 0.861 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.794 -5.530 5.457 13.299 hybrid contribution -0.418 -0.463 -1.320 1.460 sum 10.376 -5.993 4.137 12.676 Atomic orbital electron populations 1.21961 0.99416 0.99680 0.98673 1.18493 0.90316 0.92596 0.81864 0.94322 1.21525 1.32191 1.10484 0.88917 0.89174 1.25233 0.95821 0.94573 1.00357 1.70148 1.48130 1.14326 1.23328 0.86578 0.81095 0.79511 0.80006 1.21888 1.24232 1.14613 1.57381 1.69848 1.18792 1.36741 1.21398 1.00354 0.79844 1.02740 1.01374 0.73180 0.73158 0.71974 1.93522 1.83940 1.78339 1.44193 1.93478 1.85467 1.34812 1.85118 1.55328 1.27788 1.80989 1.21313 1.19769 0.97020 0.91284 0.81097 1.19688 0.99269 0.94171 0.93492 1.20730 0.99254 0.98331 0.92624 1.21049 1.00440 0.93563 0.98826 1.21151 1.00796 0.96689 0.96335 1.21160 1.00428 0.99417 0.93039 1.20895 0.99901 0.92255 0.99603 1.23177 0.93371 0.94278 1.04015 1.22784 0.96357 0.97416 1.00505 1.23955 1.02145 0.94581 1.01063 0.93574 0.96435 0.93367 0.93869 0.93603 0.90185 0.91119 0.73871 0.87197 0.87087 0.85949 0.84758 0.86092 0.88890 0.87949 0.90140 0.90597 0.89475 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.33 9.10 71.98 0.65 -5.67 16 2 C 0.27 12.34 2.50 44.24 0.11 12.45 16 3 H 0.04 2.03 5.46 -2.39 -0.01 2.02 16 4 C -0.49 -22.32 6.06 25.60 0.16 -22.17 16 5 H 0.09 3.83 3.72 -2.91 -0.01 3.82 16 6 C 0.04 1.93 5.06 84.66 0.43 2.36 16 7 N -0.92 -49.58 12.37 21.45 0.27 -49.32 16 8 Si 0.90 38.99 28.93 68.60 1.98 40.98 16 9 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 10 H -0.31 -14.56 7.11 99.48 0.71 -13.86 16 11 H -0.22 -8.45 4.67 99.48 0.46 -7.99 16 12 N -0.99 -37.66 3.03 -520.46 -1.58 -39.23 16 13 C 0.10 3.31 8.32 127.77 1.06 4.37 16 14 S 2.79 103.69 5.79 -56.49 -0.33 103.36 16 15 O -1.02 -39.85 17.52 -128.00 -2.24 -42.10 16 16 O -1.01 -44.23 13.47 -128.00 -1.72 -45.95 16 17 N -1.09 -31.11 4.40 -153.08 -0.67 -31.79 16 18 C 0.20 5.77 1.34 3.38 0.00 5.78 16 19 C -0.06 -1.95 3.95 -19.86 -0.08 -2.03 16 20 C -0.09 -2.94 7.71 22.27 0.17 -2.76 16 21 C -0.12 -3.78 7.61 22.27 0.17 -3.61 16 22 C -0.13 -3.76 9.59 22.27 0.21 -3.54 16 23 C -0.12 -3.26 9.37 22.27 0.21 -3.05 16 24 C -0.11 -3.02 7.17 22.27 0.16 -2.86 16 25 C -0.11 -2.49 7.37 31.12 0.23 -2.26 16 26 C -0.13 -3.58 7.99 31.12 0.25 -3.33 16 27 C -0.18 -6.25 6.63 31.12 0.21 -6.05 16 28 H 0.05 1.96 7.83 -2.39 -0.02 1.94 16 29 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 2.43 6.98 -2.38 -0.02 2.41 16 31 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 2.65 6.51 -2.39 -0.02 2.63 16 34 H 0.07 1.90 6.85 -2.39 -0.02 1.88 16 35 H 0.42 9.25 8.96 -96.75 -0.87 8.39 16 36 H 0.11 3.59 6.33 -2.91 -0.02 3.57 16 37 H 0.11 3.37 7.39 -2.91 -0.02 3.35 16 38 H 0.12 3.05 8.06 -2.91 -0.02 3.02 16 39 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 40 H 0.12 2.99 6.21 -2.91 -0.02 2.97 16 41 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.10 2.13 7.91 -2.39 -0.02 2.11 16 43 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.09 3.21 6.05 -2.39 -0.01 3.19 16 46 H 0.09 3.76 3.39 -2.39 -0.01 3.75 16 Total: -1.00 -61.78 352.90 -0.44 -62.22 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -0.09 Total: 34.20 kcal Atomic # 6 Polarization: -36.32 SS G_CDS: 3.95 Total: -32.38 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -1.99 Total: -120.34 kcal Atomic # 8 Polarization: -84.08 SS G_CDS: -3.97 Total: -88.05 kcal Atomic # 14 Polarization: 38.99 SS G_CDS: 1.98 Total: 40.98 kcal Atomic # 16 Polarization: 103.69 SS G_CDS: -0.33 Total: 103.36 kcal Total: -61.78 -0.44 -62.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619749078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.902 kcal (2) G-P(sol) polarization free energy of solvation -61.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds