Wall clock time and date at job start Tue Mar 31 2020 20:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.47369 * 2 1 4 4 C 1.50703 * 109.47053 * 240.00365 * 2 1 3 5 5 H 1.08004 * 119.99504 * 275.01695 * 4 2 1 6 6 C 1.37875 * 120.00410 * 95.01324 * 4 2 1 7 7 N 1.31513 * 120.00311 * 184.89999 * 6 4 2 8 8 Si 1.86801 * 119.99691 * 4.89756 * 6 4 2 9 9 H 1.48507 * 109.46956 * 84.80132 * 8 6 4 10 10 H 1.48502 * 109.47107 * 204.79935 * 8 6 4 11 11 H 1.48503 * 109.47355 * 324.80460 * 8 6 4 12 12 N 1.46503 * 109.47471 * 120.00307 * 2 1 3 13 13 C 1.46499 * 120.00020 * 59.99708 * 12 2 1 14 14 S 1.65598 * 119.99895 * 240.00054 * 12 2 1 15 15 O 1.42101 * 106.39959 * 203.53899 * 14 12 2 16 16 O 1.42103 * 106.40215 * 336.45245 * 14 12 2 17 17 N 1.65595 * 107.22176 * 89.99925 * 14 12 2 18 18 C 1.46502 * 119.99979 * 64.99330 * 17 14 12 19 19 H 1.08999 * 115.55265 * 359.33438 * 18 17 14 20 20 C 1.52997 * 117.49912 * 213.62396 * 18 17 14 21 21 C 1.52997 * 60.00269 * 252.51376 * 20 18 17 22 22 C 1.53008 * 117.51915 * 107.47868 * 21 20 18 23 23 C 1.50700 * 117.50157 * 252.51106 * 21 20 18 24 24 C 1.38238 * 119.99716 * 68.34660 * 23 21 20 25 25 C 1.38233 * 119.99915 * 179.78969 * 24 23 21 26 26 C 1.38246 * 119.99812 * 0.46348 * 25 24 23 27 27 C 1.38233 * 119.99847 * 359.76923 * 26 25 24 28 28 C 1.38233 * 120.00325 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47313 * 174.84152 * 1 2 3 30 30 H 1.09002 * 109.46723 * 294.83922 * 1 2 3 31 31 H 1.08995 * 109.47371 * 54.83720 * 1 2 3 32 32 H 0.96996 * 120.00355 * 179.97438 * 7 6 4 33 33 H 1.09000 * 109.47013 * 89.99981 * 13 12 2 34 34 H 1.08999 * 109.47297 * 210.00245 * 13 12 2 35 35 H 1.09007 * 109.46929 * 329.99987 * 13 12 2 36 36 H 0.96999 * 120.00141 * 245.00202 * 17 14 12 37 37 H 1.09002 * 117.49856 * 0.02562 * 20 18 17 38 38 H 1.08998 * 117.50082 * 145.02372 * 20 18 17 39 39 H 1.08995 * 109.46572 * 351.37638 * 22 21 20 40 40 H 1.09000 * 109.46638 * 111.37051 * 22 21 20 41 41 H 1.08997 * 109.47105 * 231.37417 * 22 21 20 42 42 H 1.07999 * 120.00174 * 359.97438 * 24 23 21 43 43 H 1.08000 * 120.00466 * 180.25121 * 25 24 23 44 44 H 1.07993 * 119.99720 * 179.79125 * 26 25 24 45 45 H 1.07995 * 119.99792 * 179.97438 * 27 26 25 46 46 H 1.08001 * 120.00421 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1352 -1.7855 -1.2292 6 6 2.3605 0.0122 -2.3580 7 7 2.7065 -0.6130 -3.4621 8 14 2.3136 1.8791 -2.3173 9 1 3.5988 2.3950 -1.7810 10 1 2.1070 2.3992 -3.6929 11 1 1.1980 2.3275 -1.4457 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4279 14 16 2.9705 0.1141 2.2862 15 8 3.7119 -0.8790 2.9813 16 8 3.5796 1.1828 1.5747 17 7 1.9609 0.8089 3.3998 18 6 1.1511 -0.0354 4.2817 19 1 1.2612 -1.1099 4.1351 20 6 -0.2297 0.4851 4.6856 21 6 0.9081 0.4618 5.7081 22 6 1.5300 1.8025 6.1045 23 6 0.8389 -0.5715 6.8029 24 6 0.9872 -1.9118 6.4986 25 6 0.9281 -2.8593 7.5033 26 6 0.7111 -2.4673 8.8112 27 6 0.5580 -1.1275 9.1147 28 6 0.6213 -0.1796 8.1106 29 1 -0.3634 -1.0235 -0.0924 30 1 -0.3633 0.4317 0.9326 31 1 -0.3634 0.5918 -0.8401 32 1 2.9370 -0.1047 -4.2554 33 1 2.4158 -2.7377 0.9715 34 1 1.6239 -2.2853 2.5001 35 1 0.6904 -2.3002 0.9846 36 1 1.9056 1.7749 3.4682 37 1 -0.5359 1.4555 4.2949 38 1 -1.0284 -0.2470 4.8047 39 1 1.1431 2.5882 5.4557 40 1 1.2762 2.0285 7.1401 41 1 2.6134 1.7455 5.9999 42 1 1.1523 -2.2184 5.4763 43 1 1.0480 -3.9062 7.2662 44 1 0.6615 -3.2079 9.5956 45 1 0.3880 -0.8213 10.1363 46 1 0.5013 0.8672 8.3476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619750342.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:05 Heat of formation + Delta-G solvation = -22.028741 kcal Electronic energy + Delta-G solvation = -28165.169923 eV Core-core repulsion = 24375.483681 eV Total energy + Delta-G solvation = -3789.686242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.16818 -37.86579 -36.73909 -36.33206 -35.30929 -32.95485 -32.47416 -31.23072 -30.20922 -29.96958 -28.55546 -25.80314 -25.13816 -23.31100 -22.88912 -21.93131 -20.74270 -19.61651 -19.05641 -17.64093 -17.43174 -16.93878 -16.52204 -16.05600 -15.33600 -15.30343 -14.84453 -14.36944 -14.26320 -13.87578 -13.67349 -13.53093 -13.32539 -12.98596 -12.80381 -12.61845 -12.52505 -12.47312 -12.22436 -12.00096 -11.86591 -11.73024 -11.66964 -11.55574 -11.39991 -11.20486 -11.15315 -11.11595 -10.91719 -10.64974 -10.35863 -10.33074 -9.81083 -9.36836 -9.09722 -9.08804 -8.67760 -8.60651 -8.10064 -6.17741 -4.18195 1.04122 1.16073 1.22646 3.24348 3.32654 3.36522 3.41876 3.44638 3.82501 4.02994 4.34949 4.36945 4.42672 4.60461 4.66236 4.80637 4.86656 4.89949 5.00261 5.06566 5.16088 5.28010 5.38183 5.52581 5.56584 5.61053 5.63961 5.67876 5.84918 5.89390 5.96464 5.98305 6.10374 6.16207 6.31406 6.34277 6.34430 6.38595 6.45300 6.52313 6.56564 6.81580 6.87358 7.02238 7.18618 7.48022 7.63858 8.42420 8.87393 9.43792 10.94258 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.022075 B = 0.003275 C = 0.003159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.106117 B = 8547.067101 C = 8861.669391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.235 3.765 3 H 0.056 0.944 4 C -0.516 4.516 5 H 0.082 0.918 6 C 0.078 3.922 7 N -0.888 5.888 8 Si 0.866 3.134 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.982 5.982 13 C 0.108 3.892 14 S 2.770 3.230 15 O -0.988 6.988 16 O -0.974 6.974 17 N -1.102 6.102 18 C 0.108 3.892 19 H 0.135 0.865 20 C -0.167 4.167 21 C -0.104 4.104 22 C -0.115 4.115 23 C -0.038 4.038 24 C -0.119 4.119 25 C -0.114 4.114 26 C -0.128 4.128 27 C -0.120 4.120 28 C -0.115 4.115 29 H 0.053 0.947 30 H 0.027 0.973 31 H 0.054 0.946 32 H 0.267 0.733 33 H 0.055 0.945 34 H 0.046 0.954 35 H 0.072 0.928 36 H 0.412 0.588 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.075 0.750 22.742 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.131 3.869 3 H 0.074 0.926 4 C -0.556 4.556 5 H 0.100 0.900 6 C -0.126 4.126 7 N -0.525 5.525 8 Si 0.693 3.307 9 H -0.190 1.190 10 H -0.212 1.212 11 H -0.189 1.189 12 N -0.825 5.825 13 C -0.038 4.038 14 S 2.780 3.220 15 O -0.971 6.971 16 O -0.958 6.958 17 N -0.856 5.856 18 C -0.001 4.001 19 H 0.153 0.847 20 C -0.207 4.207 21 C -0.106 4.106 22 C -0.172 4.172 23 C -0.039 4.039 24 C -0.136 4.136 25 C -0.132 4.132 26 C -0.146 4.146 27 C -0.138 4.138 28 C -0.133 4.133 29 H 0.072 0.928 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.245 0.755 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.996 0.633 22.516 23.586 hybrid contribution -0.427 1.330 -0.094 1.400 sum -7.423 1.963 22.422 23.701 Atomic orbital electron populations 1.22235 0.98215 1.01232 0.98994 1.19121 0.91238 0.93163 0.83338 0.92642 1.21142 1.44135 0.96024 0.94342 0.89992 1.24997 0.93872 0.98444 0.95313 1.69881 1.44848 1.36082 1.01719 0.87022 0.80163 0.86345 0.77205 1.18953 1.21223 1.18869 1.57937 1.70000 1.19797 1.34767 1.21204 1.01906 0.82128 0.98604 1.02407 0.73791 0.73389 0.72448 1.93556 1.68841 1.60354 1.74342 1.93614 1.74144 1.56281 1.71784 1.55943 1.61200 1.16865 1.51594 1.21474 0.93900 0.94538 0.90219 0.84744 1.23689 0.92132 1.03928 1.00931 1.20699 1.03772 0.96688 0.89477 1.21316 1.01005 0.93311 1.01558 1.19017 0.98840 0.92824 0.93174 1.21126 1.00121 0.92511 0.99880 1.21153 0.99560 0.99568 0.92918 1.21148 1.00763 0.96071 0.96595 1.21112 1.00399 0.93212 0.99035 1.20971 1.00498 0.99652 0.92144 0.92762 0.95360 0.92732 0.92315 0.92624 0.93497 0.90943 0.75514 0.87750 0.87800 0.91993 0.91692 0.91642 0.85795 0.85884 0.86239 0.86191 0.85944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.04 37.16 0.34 -2.49 16 2 C 0.23 5.31 2.28 -69.08 -0.16 5.15 16 3 H 0.06 1.33 4.06 -51.93 -0.21 1.12 16 4 C -0.52 -13.95 8.82 -34.44 -0.30 -14.25 16 5 H 0.08 2.36 7.67 -52.48 -0.40 1.96 16 6 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 7 N -0.89 -26.52 13.96 55.43 0.77 -25.74 16 8 Si 0.87 21.58 26.99 -169.99 -4.59 16.99 16 9 H -0.26 -6.81 7.11 56.52 0.40 -6.41 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.26 -6.10 6.82 56.52 0.39 -5.71 16 12 N -0.98 -19.38 3.12 -115.85 -0.36 -19.74 16 13 C 0.11 1.81 9.39 59.85 0.56 2.37 16 14 S 2.77 53.01 6.07 -107.50 -0.65 52.36 16 15 O -0.99 -20.36 16.97 -57.17 -0.97 -21.33 16 16 O -0.97 -22.29 16.70 -57.17 -0.95 -23.24 16 17 N -1.10 -15.44 5.74 -4.89 -0.03 -15.46 16 18 C 0.11 1.29 5.80 -67.93 -0.39 0.90 16 19 H 0.14 1.60 4.71 -51.93 -0.24 1.35 16 20 C -0.17 -1.63 9.80 -26.73 -0.26 -1.89 16 21 C -0.10 -1.08 2.55 -155.66 -0.40 -1.48 16 22 C -0.11 -1.07 8.86 37.16 0.33 -0.74 16 23 C -0.04 -0.40 5.45 -104.62 -0.57 -0.97 16 24 C -0.12 -1.26 9.39 -39.58 -0.37 -1.64 16 25 C -0.11 -1.08 10.05 -39.58 -0.40 -1.48 16 26 C -0.13 -1.10 10.05 -39.58 -0.40 -1.50 16 27 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 28 C -0.11 -1.07 9.27 -39.58 -0.37 -1.44 16 29 H 0.05 0.99 6.88 -51.93 -0.36 0.63 16 30 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.64 6.46 -51.93 -0.34 0.30 16 35 H 0.07 1.12 6.53 -51.93 -0.34 0.79 16 36 H 0.41 4.98 8.13 -34.47 -0.28 4.70 16 37 H 0.10 0.94 8.05 -51.93 -0.42 0.53 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.51 7.63 -51.93 -0.40 0.11 16 40 H 0.06 0.51 6.14 -51.93 -0.32 0.19 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.12 1.27 5.93 -52.49 -0.31 0.96 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.12 0.95 6.45 -52.49 -0.34 0.61 16 LS Contribution 378.69 15.07 5.71 5.71 Total: -1.00 -33.85 378.69 -10.45 -44.30 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -6.49 Total: 4.92 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -2.89 Total: -18.76 kcal Atomic # 7 Polarization: -61.33 SS G_CDS: 0.38 Total: -60.95 kcal Atomic # 8 Polarization: -42.65 SS G_CDS: -1.93 Total: -44.57 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.59 Total: 16.99 kcal Atomic # 16 Polarization: 53.01 SS G_CDS: -0.65 Total: 52.36 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.85 -10.45 -44.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619750342.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.270 kcal (2) G-P(sol) polarization free energy of solvation -33.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds